BDGP Sequence Production Resources |
Search the DGRC for RH37427
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 374 |
Well: | 27 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Trs33-RA |
Protein status: | RH37427.pep: gold |
Preliminary Size: | 459 |
Sequenced Size: | 628 |
Gene | Date | Evidence |
---|---|---|
CG6196 | 2001-12-17 | Blastp of sequenced clone |
CG6196 | 2002-01-01 | Sim4 clustering to Release 2 |
CG6196 | 2003-01-01 | Sim4 clustering to Release 3 |
CG6196 | 2008-04-29 | Release 5.5 accounting |
CG6196 | 2008-08-15 | Release 5.9 accounting |
CG6196 | 2008-12-18 | 5.12 accounting |
628 bp (628 high quality bases) assembled on 2001-12-17
GenBank Submission: AY071721
> RH37427.complete GATTCGCCCGTTAACGCTTGCAACAGCTGTTTAAATCTAGATCAAAACAA ATCCGAGGAAAAATTTGTTGAACTCACAAAGAAAAATTAAATCCTCGAAA ATGTCTGAAGAAATCCTTTTCGATTGCCTCCATGCAGAGATAGTCAATTA TTGTCTGGATAGCAATAAGGAGCACGACCTGGCCACTTTGGAGTATATAG GCTTCACCACCGGCTACCGCCTGATTGAGCGGCTCACCCGTGAAGTTTCG CGTTTTAAGGACGAGTTGGAGACTATGAAGTTTATATGCACCGACTTCTG GATGCTTATATACAAGAAGCAAGTGGACAACCTGAGGACGAACAACCACG GAATGTACGTTGTGCAGGACAAGGCTTTCCGCTTTCTGACTCGCATCTCG CCGGGCACCAAGCAGCTGGAGCACGCGCCCAAGTTCGTGGCCTTCACGTG CGGGCTGGTGCGAGGAGCTCTCAGCAATCTAGGCATTAACAGCACCGTGA CGGCCGAAGTGCAAAGCATACCCGCCTGCAAGTTTCACATAGAAGTGAAC AGGAACTAATTAGGATGTAAGGCAATGGTTTATTACTACAATTATAGAGA TACTACAGAAAAGAAAAAAAAAAAAAAA
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 11174975..11175418 | 170..613 | 99 | <- | Minus |
chr3R | 11175487..11175654 | 1..169 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6196-RA | 1..459 | 101..559 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6196-RA | 1..459 | 101..559 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6196-RA | 1..459 | 101..559 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6196-RA | 1..459 | 101..559 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trs33-RA | 1..459 | 101..559 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6196-RA | 1..612 | 2..613 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6196-RA | 1..607 | 2..608 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6196-RA | 1..583 | 26..608 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6196-RA | 1..612 | 2..613 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trs33-RA | 1..583 | 26..608 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 15350852..15351019 | 1..169 | 99 | Minus | |
3R | 15350340..15350783 | 170..613 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 15350852..15351019 | 1..169 | 99 | Minus | |
3R | 15350340..15350783 | 170..613 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 15350852..15351019 | 1..169 | 99 | Minus | |
3R | 15350340..15350783 | 170..613 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 11176574..11176741 | 1..169 | 99 | Minus | |
arm_3R | 11176062..11176505 | 170..613 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 15091171..15091614 | 170..613 | 99 | <- | Minus |
3R | 15091683..15091850 | 1..169 | 99 | Minus |
Translation from 100 to 558
> RH37427.pep MSEEILFDCLHAEIVNYCLDSNKEHDLATLEYIGFTTGYRLIERLTREVS RFKDELETMKFICTDFWMLIYKKQVDNLRTNNHGMYVVQDKAFRFLTRIS PGTKQLEHAPKFVAFTCGLVRGALSNLGINSTVTAEVQSIPACKFHIEVN RN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23236-PA | 152 | GF23236-PA | 1..152 | 1..152 | 796 | 97.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20640-PA | 152 | GG20640-PA | 1..152 | 1..152 | 819 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16884-PA | 153 | GH16884-PA | 1..153 | 1..152 | 729 | 87.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Trs33-PA | 152 | CG6196-PA | 1..152 | 1..152 | 800 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10729-PA | 153 | GI10729-PA | 1..152 | 1..151 | 736 | 89.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13756-PA | 152 | GL13756-PA | 1..152 | 1..152 | 805 | 98 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19431-PA | 152 | GA19431-PA | 1..152 | 1..152 | 805 | 98 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25781-PA | 152 | GM25781-PA | 1..152 | 1..152 | 815 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20358-PA | 152 | GD20358-PA | 1..152 | 1..152 | 819 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10671-PA | 153 | GJ10671-PA | 1..153 | 1..152 | 753 | 90.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11311-PA | 153 | GK11311-PA | 1..153 | 1..152 | 766 | 93.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE26386-PA | 152 | GE26386-PA | 1..152 | 1..152 | 819 | 100 | Plus |
Translation from 100 to 558
> RH37427.hyp MSEEILFDCLHAEIVNYCLDSNKEHDLATLEYIGFTTGYRLIERLTREVS RFKDELETMKFICTDFWMLIYKKQVDNLRTNNHGMYVVQDKAFRFLTRIS PGTKQLEHAPKFVAFTCGLVRGALSNLGINSTVTAEVQSIPACKFHIEVN RN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Trs33-PA | 152 | CG6196-PA | 1..152 | 1..152 | 800 | 100 | Plus |