Clone RH37735 Report

Search the DGRC for RH37735

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:377
Well:35
Vector:pFlc-1
Associated Gene/Transcriptste14-RA
Protein status:RH37735.pep: gold
Preliminary Size:931
Sequenced Size:1153

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11268 2001-12-13 Blastp of sequenced clone
CG11268 2002-01-01 Sim4 clustering to Release 2
CG11268 2003-01-01 Sim4 clustering to Release 3
CG11268 2008-04-29 Release 5.5 accounting
CG11268 2008-08-15 Release 5.9 accounting
CG11268 2008-12-18 5.12 accounting

Clone Sequence Records

RH37735.complete Sequence

1153 bp (1153 high quality bases) assembled on 2001-12-13

GenBank Submission: AY070700

> RH37735.complete
GATCGTTATCGAAAGCTTTGCCGGTTTATTTACATTTTGGCGCATTAAAC
CAAGCAAATGTTTTAAAAAAACCTCAATTTCCGTGTTTTTGCGCACAGCA
GCAGCACAAAAAGAATCCCGATTCCCCAGTTATGTGTGCAAAGAGCCGAG
TGGCTTCTCCTGGGGCCGGTGGCACCAGCCTGTGTTCCGAAGGCCGCATC
AGTTTATATTGCTTTCTGATTACTGCAGCTCTAGTCCTGATTCCCTCGGT
GCCCCAGAATCTTTATGGAGTGGTGCCACAGGTGTGGGGCGCCGTCCTCT
GGGGTCCATTTTTGTACTACGCCCTTATTAACATGATCATACGGTTTGTG
CTGCGGAACCACGACTACCAGGTGGCCATTAGGGCATCCTTCCTGGGCTT
TGCCATGGCCGTGAGTGTGCTGGTCATCTGCTTTGCTCCCACCGAGTGGC
AGCAATTTGGCGCCTACGGATGCTTCATGTCCCTTTTCCACTACTCGGAG
TTCCTCGTTATCGCCTTTGCCAATCCGCGCACTCTCAGTCTCGACTCCTT
TATGCTGAACCACTCTGTGCACTATGGACTGGCGGCGGCAGCCAGTTGGA
TCGAGTTCTCACTAGAGGTGTACTACCTGCCGCAGTTCAAGAGATACGGA
TACATTTGGGTGGCGGGCGTGGTCCTGTGCCTGCTGGGCGAGATGGTTCG
CAAGGCAGCCATCATCACAGCTGGCCGGAGCTTCACTCACTTGGTCCAGA
ATGAGAAACACTCGGAACACAAGCTAATAACAAGCGGGATCTACGCCTAC
TGCCGCCACCCGTCTTATGTCGGCTGGTTCTGGTGGTCCATCGGAACCCA
GATCGTGCTATTGAATCCCATCTGCATATGCATTTACACACTGGTCAGCT
GGCTGTTCTTCCACGATCGCATCTACGTCGAGGAGTACTCCCTGCTCAAC
TTCTTCCAGTCGGACTATGTGCGCTATCAAAAGCGGGTGCCAACGGGCCT
GCCCTTCATCCGGGGCTATCTGGTCGATTAGTGCCTCTGATCTGGGGTTC
AATGTCACAAGTCGCCATGGCAAACAAAACAAAATTCTATTTTAGGTTTA
GGTATACAAGGTATACAGCAGTTCTCTTTTGTATAGCAAAAAAAAAAAAA
AAA

RH37735.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:48:41
Subject Length Description Subject Range Query Range Score Percent Strand
ste14-RA 1316 ste14-RA 75..1219 2..1147 5690 99.9 Plus
ste14.a 1536 ste14.a 75..1219 2..1147 5690 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:50:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 13009486..13009880 743..1137 1975 100 Plus
chr3L 24539361 chr3L 13008984..13009360 369..745 1885 100 Plus
chr3L 24539361 chr3L 13008551..13008922 2..374 1815 99.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:28:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:50:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13019187..13019591 743..1147 2025 100 Plus
3L 28110227 3L 13018685..13019061 369..745 1885 100 Plus
3L 28110227 3L 13018252..13018623 2..374 1815 99.7 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:14:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 13012287..13012691 743..1147 2025 100 Plus
3L 28103327 3L 13011785..13012161 369..745 1885 100 Plus
3L 28103327 3L 13011352..13011723 2..374 1825 99.7 Plus
Blast to na_te.dros performed on 2019-03-16 20:50:36 has no hits.

RH37735.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:51:18 Download gff for RH37735.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 13008550..13008919 1..371 99 -> Plus
chr3L 13008987..13009358 372..743 100 -> Plus
chr3L 13009487..13009880 744..1137 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:45:44 Download gff for RH37735.complete
Subject Subject Range Query Range Percent Splice Strand
CG11268-RA 1..900 132..1031 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:17:07 Download gff for RH37735.complete
Subject Subject Range Query Range Percent Splice Strand
ste14-RA 1..900 132..1031 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:40:51 Download gff for RH37735.complete
Subject Subject Range Query Range Percent Splice Strand
ste14-RA 1..900 132..1031 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:43:15 Download gff for RH37735.complete
Subject Subject Range Query Range Percent Splice Strand
CG11268-RA 1..900 132..1031 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:56:37 Download gff for RH37735.complete
Subject Subject Range Query Range Percent Splice Strand
ste14-RA 1..900 132..1031 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:49:41 Download gff for RH37735.complete
Subject Subject Range Query Range Percent Splice Strand
CG11268-RA 2..1136 2..1137 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:17:07 Download gff for RH37735.complete
Subject Subject Range Query Range Percent Splice Strand
ste14-RA 2..1136 2..1137 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:40:51 Download gff for RH37735.complete
Subject Subject Range Query Range Percent Splice Strand
ste14-RA 1..1121 16..1137 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:43:16 Download gff for RH37735.complete
Subject Subject Range Query Range Percent Splice Strand
CG11268-RA 2..1136 2..1137 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:37 Download gff for RH37735.complete
Subject Subject Range Query Range Percent Splice Strand
ste14-RA 1..1121 16..1137 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:51:18 Download gff for RH37735.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13018251..13018620 1..371 99 -> Plus
3L 13018688..13019059 372..743 100 -> Plus
3L 13019188..13019581 744..1137 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:51:18 Download gff for RH37735.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13018251..13018620 1..371 99 -> Plus
3L 13018688..13019059 372..743 100 -> Plus
3L 13019188..13019581 744..1137 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:51:18 Download gff for RH37735.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13018251..13018620 1..371 99 -> Plus
3L 13018688..13019059 372..743 100 -> Plus
3L 13019188..13019581 744..1137 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:40:51 Download gff for RH37735.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13011351..13011720 1..371 99 -> Plus
arm_3L 13011788..13012159 372..743 100 -> Plus
arm_3L 13012288..13012681 744..1137 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:19:23 Download gff for RH37735.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13011351..13011720 1..371 99 -> Plus
3L 13011788..13012159 372..743 100 -> Plus
3L 13012288..13012681 744..1137 100   Plus

RH37735.hyp Sequence

Translation from 0 to 1030

> RH37735.hyp
IVIESFAGLFTFWRIKPSKCFKKPQFPCFCAQQQHKKNPDSPVMCAKSRV
ASPGAGGTSLCSEGRISLYCFLITAALVLIPSVPQNLYGVVPQVWGAVLW
GPFLYYALINMIIRFVLRNHDYQVAIRASFLGFAMAVSVLVICFAPTEWQ
QFGAYGCFMSLFHYSEFLVIAFANPRTLSLDSFMLNHSVHYGLAAAASWI
EFSLEVYYLPQFKRYGYIWVAGVVLCLLGEMVRKAAIITAGRSFTHLVQN
EKHSEHKLITSGIYAYCRHPSYVGWFWWSIGTQIVLLNPICICIYTLVSW
LFFHDRIYVEEYSLLNFFQSDYVRYQKRVPTGLPFIRGYLVD*

RH37735.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:07:07
Subject Length Description Subject Range Query Range Score Percent Strand
ste14-PB 299 CG11268-PB 1..299 44..342 1603 100 Plus
ste14-PA 299 CG11268-PA 1..299 44..342 1603 100 Plus

RH37735.pep Sequence

Translation from 131 to 1030

> RH37735.pep
MCAKSRVASPGAGGTSLCSEGRISLYCFLITAALVLIPSVPQNLYGVVPQ
VWGAVLWGPFLYYALINMIIRFVLRNHDYQVAIRASFLGFAMAVSVLVIC
FAPTEWQQFGAYGCFMSLFHYSEFLVIAFANPRTLSLDSFMLNHSVHYGL
AAAASWIEFSLEVYYLPQFKRYGYIWVAGVVLCLLGEMVRKAAIITAGRS
FTHLVQNEKHSEHKLITSGIYAYCRHPSYVGWFWWSIGTQIVLLNPICIC
IYTLVSWLFFHDRIYVEEYSLLNFFQSDYVRYQKRVPTGLPFIRGYLVD*

RH37735.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:33:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24629-PA 304 GF24629-PA 21..304 16..299 1337 86.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:33:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15617-PA 299 GG15617-PA 1..299 1..299 1514 94.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:33:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23306-PA 311 GH23306-PA 1..311 1..299 1295 78.5 Plus
Dgri\GH17080-PA 218 GH17080-PA 1..208 1..204 836 76.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:25:41
Subject Length Description Subject Range Query Range Score Percent Strand
ste14-PB 299 CG11268-PB 1..299 1..299 1603 100 Plus
ste14-PA 299 CG11268-PA 1..299 1..299 1603 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:33:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11680-PA 298 GI11680-PA 1..298 1..299 1278 78.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:33:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25267-PA 301 GL25267-PA 1..301 1..299 1359 83.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:33:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10878-PA 301 GA10878-PA 1..301 1..299 1359 83.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:33:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25390-PA 299 GM25390-PA 1..299 1..299 1556 97.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:33:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14422-PA 299 GD14422-PA 1..299 1..299 1568 98.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:33:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11352-PA 300 GJ11352-PA 1..300 1..299 1303 80.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:33:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16836-PA 305 GK16836-PA 23..305 17..299 1265 80.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:33:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21944-PA 299 GE21944-PA 1..299 1..299 1511 94 Plus