Clone RH38069 Report

Search the DGRC for RH38069

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:380
Well:69
Vector:pFlc-1
Associated Gene/TranscriptstnA-RC
Protein status:RH38069.pep: gold
Preliminary Size:2722
Sequenced Size:8160

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12500 2002-01-01 Sim4 clustering to Release 2
CG12473 2002-03-29 Blastp of sequenced clone
stnB 2008-04-29 Release 5.5 accounting
stnB 2008-08-15 Release 5.9 accounting
stnA 2008-08-15 Release 5.9 accounting
stnA 2008-12-18 5.12 accounting
stnB 2008-12-18 5.12 accounting

Clone Sequence Records

RH38069.complete Sequence

8160 bp (8160 high quality bases) assembled on 2002-03-29

GenBank Submission: BT011172.1

> RH38069.complete
GATTCTGTTCTAGATTTCCCGATAGTTCAAATCAGAGACCAATCTCGATG
TCTCCGCAAATAGATAATGCTTAAGCTACCAAAAGGCCTAAAAAAGAAAA
AGAAGAAGTCGAAAAAGGATCAGGAGCTCTTCACCGAGGAGGAGCTCGAG
CAGTACAAGCGCGACCTAAAGGCCAAACAGGAGGCGGCGGCCACAAAATC
GGACGCCGGCGAATCCGACGGAGCGTCATCAGACGTTGAGGCCCACCACG
AGCCAGTAGCCTTTAACTCAGGATTAGGCTCGGGATCATCCTCTAGCATC
CTCAACGCCCAACAACAGTTATCGGATCAAAATCAGGGGGCTGCCGGCGG
CGACGAGGAGTGGGCCAAATTTAAGGCACTAACATCAGGCGTCGATAGCA
TTCTACATAAAACCCAGGACGAGCTCGATCGGATCAAGAAGGAGTCATTT
TACCAGCGCCTGCCCTCTGCCGCTGAAAAAAAGAAACAAAAGGAGGAGGA
GGCCGCTCGCCTTGAAGCCGAGCAGCAGGAGCGGGAAAAACAGCGCCTTG
GGCAGATCGAGGCCCAACGGGACAAGTTAGCTGAGGCGGTTGTTCAGTTA
TCTGAATCAGAGGAGGAGGCAGGCGATTACGAGGCCGATGACATCTTTGC
CACCGACTACATTGAGGCTATCACCAGTGGCGAGCTCCAACTAGCCGTTG
TACCAGATTCCCCCGTCCTTGCCGAAGACGGACCCGATCCCTTTGACACC
GCATACGCGGAGAAGGTTATTGTTGGTGCCGATCGAGCAAAGGGCAACAA
GAAACTAGTGAGTCTTGGTGCAGCCGTTGAGGTTTTATCCGGTCGCGTGG
ACCGAGAGCACGCTGTCGCCCTAGCGAATCCCAAGCGGAAGTTAAGGAAG
GGTATCCAGAACCTACTTCTGAGTGAAAGCATAGAGCTAGCTGATTCAGA
AGCGGAACTTCTGGCTGCCACTTCGAACGCCGAGCCGCAGCATAATTTGC
TCGACGACCTCGACGAGGAACTATCCGAGTCATCGGTTCCCATTGATCTC
AGTGTCTCCTTGCATTTGCACTTGATTAAGCACAAGCAGCCCGTAGAGGA
GGAGGAAGAGCTCGAGCAGAAGGGTCGGGAAAATCAGCTTCTTAACCCGG
ATCTATCTGAATTCGATTCACTCAAAGACGAGGAGGACGACGAGTTCGCC
GAACTAGCCGCGGAATCGCTGACCAAAAAGGAAGAGGTTACTGTAGTTAG
CCAGGTTGTTTTGCCTGTCGCGCAGCTGCCCACTGAAGCCTTTGAAGCAG
GCAGTTGGGCCGAATTTGAAGAGCAATCGGGCCAAGAACCAGGAAAACCA
AAGCGTCCGCCACCACCAGTCCGTCCGCCTACAGGACCCCACATTGTGCC
CGGAGCGATTTACGTGTCGGAGGACGAGGAGGAGAATCCGGAAGACGACC
CCTTCAACACCAACTACGCAGAGCAAGTGATTAAGAAGACCACTGTACTT
GAGGAAGACGACGACTTTGATCCGCGTGCGGAGGAACACGCCACCGAGCC
ACCCTTTTTAGCAGCTCCACAACGCGATCTTCTCGCTGGTAGTGCTACCG
ACCTCAGTCAGGTGGTTCCCGCGCCCTTGGCGCCGACTTTAAGTGTCGAC
CAAGAGGCAGAGGACTTTGATCCCTTCGATACATCGGCCGTATCGGCTCT
GGTGCAACCCAAGTCCACGGAACTACGGTTTCTGGAGCGCGAGCTCCTTA
ACTATTCGGGCTTAGACGGAGTAACCCTCAAGCACTCCCTGAGTGACCAA
GACTTTGATCCACGAGCGGATCAAAAAGAACCAGCAGCACCGCAAGTAAA
ATTAGAGCAAAAAGAGACGGATTTCGATACAGCCCAACGAAAGTCCTCTC
TGAGTCTAAACATACAGGCCAAGAGTGTTGGCTTCCTGGTACCGGCATCA
GATCTTCTCGGAGCGGGTAATGAATTGGGAGCTAGTAAGAAGCCACTGAC
GCCGTACTACGCGCCATCTGACAATCGTTTGCAGGAGCGTGAACGAGAAG
CTGAGGACGTTGACCCCTTCGATACGTCACATGTGCCTGAGGCAAAACTC
AGCGATATAGAGCTGAAGCATATTGAAAAGGATTTGATCTCCGTACCCGC
CAATCTACGGCACAGCCTTTCCGACCCAGATTTTGATCCCCGTGCTCCAC
CTACTCCGGTTCCAGCTGAAGTCTTACTGGCCGTCGAGGAGAATATCAAC
ATCAAGGTCTTAACACCCGCTCAAGACCGAAAGAAGCTAACCAATTCAGG
TGGAAGCGGCAAATCGGAGGAGGACATCGACCCATTTGACACATCCATAG
CGGCAAATCTCCAGCCGGGCCAGACTGAGCTAAAACTTCTAGAAAACGAA
CTATTGCCGGAGACAAAGACTTTGGTGACTGACGTACTTGACGTGCAAAG
CGACGCTCAGGAGTTGGGCTTGGGCGACAAGGTCCTCACGCCTTCGACAC
ACTCAAGACCGTCCTTGCCCGCCCAGGATATAGACCCGTTTGACACTTCA
ATAGCGGAGAACCTAGCGCCCGGCGAAGCGGAGATAAAGCTGCTGGAAAG
CGAGCTGATCGAACGTTAAGATAAGATATAGACGATCTTTAATCACAGAA
AAGTAAAAGCCGAAATCGGAAATGGCGAATCCCTTTTTAATGGACGAAGA
CCTCGATGGTTGCGATGGAGCGGCCAACCCGTTTCTCATGCAATCTGAAC
CGGAACCTAGTTCGGATAATCCCTTTATGGCAGCTACCGTCGCTTCGAAT
CCCTTTGCCTTTGGTGCCGACGATCTCGAGTTGGGGGCGGAGCCGGAAGC
GGAGGCTACCCATGACAACGATCTCGACCCGGCGATGAGTTTCTTCGGCA
CTACCATTGAGGCGGAGGACGACACGTTAAGTTTGAAATCAGGCGCTGAG
GAGGAGGATGAGGGAAAGAAACCGCCTCAGTCACAGCCACAGTTGCAATC
ACACGCGCACCCGCACCCGCCCCCGCCACGACCACTGGTTCCTCCACAGA
GCACCCAAGACTTAATTAGTACGGTGTCCAGTCAGTTAGACGAAACTAGT
TCGGAGCTACTAGGTCGTATTCCCGCCACCCGATCTCCCAGCCCGGTTTC
GATGCGGGATCTGCACTCGCCCAGCCCCACTCCGGATTCGGGACTAGCCG
ATCTTCTGGATGTGTCGGTGGATAGTGGATCGAGTGCCCATACTCAAGGC
ATTGAGGCGGACTTAATTAGTGGTGTGGCAGGGGGAGTGCGGCTAGATAA
TCCCTTTGCAGTGCCGACAGCGGTGCCTAATATTCAGGCGGCAGTTCCAC
TGCCTGCAACACCGATTAAACAACCCCCTCGCCCACCACCGCCTCGTCCT
GCTCCCCCACGTCCCGCTCCTCCGGGTCAGGCAGCACCACAAAGACCTCC
ACCACCGTTGGCCGCAGTTAATCCACCGCCAGCTGCTCCAGAAGCGGATG
ACCTTTTGGATATGTTTGGTACTACGGCATGTAAGCCGGCCAAGCCGCCA
CCACCTAAATCCAAGGAGGACATACTGAGTCTATTTGAGCAACCGCATGT
ACCACTATCCCAACCAGCATCCAAGCCGGACTTACTGCATGACGATCTGG
ACGAGACGATTGGGGAGGGTGAACCGCCGGAACAAGAGGAGCCGGACACG
GAGCAGAGCAATGAAATTAGCTCTCGAGATGAACCAGTATTTACTTCCCT
TCTTATACGACCAGATGAAAGCACCCATGATATAACATCCCAACCACAGG
CGGCTACTGGATTGGAACGACAGGTGAATAACATGGCTGCACCATCGGGA
ACCGCCAGCACGCAGAGGGCGACCACGCCCGATATTGAGATAACCACGGT
AGAGGACCTGCCGCGATCTGATGACGAGGATGAGCCGGAGGCTATGCAGG
AGCCCGAAACAGAGACGAAACCACAAATCGAACCCGATACGGAGCCCGAG
ATCGTATCTGAACACAGCCCACCAACGGAACGCCTTGTGACTCAGGCAGC
CCTCGTCGATGGTGAGCTAATAGCCGCCGAGCCTGAGCCGGAAGAAATGG
ACACCGGTCTAGATTTTCCGCTGGCTTCCAGCGGCCAGTTGTCCGCCAAC
CCCTTCGCCAGCCCCGACGAGGAGGAGCCGAACTTCGCGCCCATGCCAGC
GGCAGTTGCCAATATATTTGCAGTGAACGATCCGGACTCGCAGATGGAGA
CCCCGAAAGCGCCTAGCCATACGGCCAATATCTTTGCTTCCGATCCAGAC
GAGTTCGACGCCTTCTCAGCCAAGTTTGACTCGGTGAAGAAGGACAACAT
CAGCATAATGGACGGATTTGGCGGTTCCGGAGCGATAACGCCCACGGGCG
GCGATGCTTGGGGAGGTAGTGCTTTTGGATCAACTACAATCTCGGCTAAT
GCCTGTGGCGACACCAATTCGGCGGATGATGGATTCGGTAACGATGACGA
TGATTTCTATGCAATGCAGGCGCCTGCACGAGCGGATTCCGTGGAATCTG
TGGACAAGGATTTCAGCGTGGTGATCCGCCCGATGGCAGAGGAAACTAGT
GGGGTGGCCCCCCAACTTGCGCCACCACCGCCGCCGGCGCGTGGAGTTAA
CCAGGCACAGACCACATCGCTGCCTGGCTTAACCGTCAATCCGTTCGAGG
ATGTTAGTGGCTTCCCTGCTCCGGGGCTGCCACCAACCGATGGAACCGCC
ATTAAACGCACGGACTCGCAGGACACTCCACAGACACCACTCTACGACGA
GGATGTATCACAACCGCTGGAGGAGTTCCCGAGACTCCATTACATTGGAC
CCGGATGGGAAATGCAACTGCGTCAGCCCAACAAGAAGAAGATCACCGGT
CAGCGCTTCTGGAAAAAAATCGTAGTCCGACTGGTGGTGCAGAACGACGT
GCCGGTGGTGCAGCTGCTTAACCAGGCGGGCGATAAGCAACCCTTTCAAG
AACTGCCCTTACAACCCTCGTATTCTGTGTCGGAGATCGGGGCCCAGCAG
TATGACCAGTTCGGCAAAATTTTCACGATGAAACTACAGTACATATTCTA
CAAGGAGAGACCCGGCGTTAGACCCGGTCAAGTGACCAAGGCGGAGCGGA
TCACAAATAAGCTGACCAAGTTTGCACAATATGCCATCGCTGGCGACTAC
GAAGGCGTCAAGGAGTTTGGCAGCGATCTCAAAAAACTGGGCCTGCCTGT
AGAGCATGCCCCGCAGTCATCCCAACTCTTCAAGATTGGCTCAATGAACT
ACGAGGACATGAAGCAGTTCTCGGTCTGCATCGAGGAGGCATTGTTCAAG
ATTCCGGCTCTCCGAGAGCGAGCGTTGACATACAAAATGGAGGAGGTCCA
GGTAACCGCCGTTGATGAGATCACTGTGGAACAGGACTTCGAGGGCAAGA
TCCTCAAACAGATTGCCCGGGTGCGACTCTTCTTTCTCGCCTTTCTTACC
GGCATGCCCACCATCGAGTTAGGCGTAAACGATATGTGGCGGCAGGGAAA
GGAGGTCGTTGGACGGCACGACATCATCCCGGTGGCCACCGAGGAGTGGA
TCAGGCTGGAGGACGTTGAGTTTCATAGTGTTGTTAATCAGAAGGAGTAC
GAGAGAACGCGCACCATCAAATTTCAACCACCAGACGCGAACTATATTGA
GCTGCTCCGCTTCCGTGTGCGTCCGCCCAAGAATCGTGAACTTCCGCTGC
AGCTGAAGGCAACCTGGTGCGTTAGCGGCAACAAGGTGGAACTTCGGGCC
GACATTTTGGTGCCTGGATTCACATCCCGGAAATTAGGCCAAATCCCCTG
CGAGGATGTCTCCGTTCGCTTCCCCATACCCGAATGCTGGATCTACCTGT
TTCGTGTGGAGAAGCACTTCAGATATGGTTCGGTTAAGTCAGCTCATCGG
CGAACAGGCAAGATCAAGGGTATCGAGCGAATCCTGGGTGCCGTCGACAC
GCTTCAGGAGTCGCTGATCGAGGTGACCTCCGGACAGGCCAAATACGAGC
ATCATCACCGGGCCATTGTGTGGCGTTGTCCCCGTTTGCCCAAAGAGGGT
CAAGGTGCATACACCACACATCAGCTGGTGTGCCGAATGGCCCTTACATC
GTATGATCAGATTCCAAGCGAGCTGGCGCCATACGCATTCGTGGAGTTTA
CTATGCCCGCCACGCAGGTCTCCCATGCCACCGTGCGCTCGGTGAGTGTC
CAGGATTCGGATGGCGATGAACCGCCAGAGAAGTACGTCCGCTATTTGGC
ACGGCACGAGTACAAGGTTGGCATCGAGACCACGCACGGCGAGTCCACGA
ATGCGTATTTGGCGGCAACGCGTCCTATTCGCGAGGAGCCGCCCACCACA
GCAACCAAGCCAACTGCTTCCCCGGTTGCGCCCAGCGATTCGGACACGGA
CTCTAACTAAGTTGGCTAGGTGCTGCGTTCCGTTGCCACAGTACTTCACA
ATTTCAGGTGAATGGAAAGGCATGCAATCAAGCGGATTTTTGTAGATATT
CCTCGTGTATGGTTTTCCTTATCGTTCTTGTTATATACATACATATTATA
TAATACGGTGTTAAGTACAGCAATTGAAAAAGCAGACGAAGGAGAACAGT
GACGAAACGGTCATCGCTCTGTAAAAAGCCAAATGAACGAAGCCCAGAAG
GAGCTAATGGATCTGTGGACCCGTCAGAGGACTTATCAAAGGCATCTTGG
CCTATAATCTATAAACCATATGCCACAGCCATTGTCACATGACCTAAAAA
ATTTAAACTTCGTTACTTGTAGACATATGATTACGTTAATGTTAATTGAT
ATCAGACCAGAATCGTACTTAAAGTCAACTCATCATATGCATAGTGGTTA
TAATCCCAATACACACAAACTCATACAAGCGAGCAAAGAAGAACATAAAC
GAAGAAAAATTTAAAGCAATTTCCCTCATAGCGTTCTAATTAATAAAAAC
CGAGCATCTACCTTAAAAAGATAATACATCGCTGGCTCCAGTTTTCCACT
TCACATGATGTTAACATTAGCATTAACGTGTAAGTTTATGGCGAAGGCTG
CAAGCATATATTAATCAACACTGGAGTGAGCTGCCAGCCTCAAAAGACGT
TAGCCTACCCTGGAACGAGCTGCCAGCTTTACAAAGTTAACCAACACTGG
TCACCATGCATATGTGGTATGTGAAACTTGAAACTATTCATAGCCATCAT
ATACACTTAAGTTTATGTATACCATTAATTTCATAAATTTAGAAATGAAT
TGAAAACTACAAACAAAAGCAAAACGAAAATGCTTATTTAAATGTTATTG
TTGTGAATTAAATTAAAGTAGATTCAAAATAAACTACGAAGTAATGGGAA
ACAATATAGGCAAATCATCTTTGTTGACGCAGAAAGTCTATAAGAAACCA
AAAATCTATATATACATATATATATATAACTTAAATAAATATTTGCCATA
CATATTGTTTTGTTGCTTGAGTTATCAAAAAAAAAATTTAATACAAATAG
ATTTGTAAATTACGTGTTAAATAAATATACTCTTCATCCCAGACTAACAA
CTTCCGAAAAGGCTTGCATTTTTTGGTCCTCTTCAAACAGCTCTACTACG
AACTCTTAAAACGGCTCATAACGGATTCATTAACACAAATAGAGAAATGT
GTATATTGTACCCCTAAGAAATGATTATTTATTCATGTATTATGTATGTT
ACATTATTTACGTTTAATTCTACATATATTATATCGGATAAAGCATATAT
ATTGTATGTACAATAAAAAGGAAGAAAATCTATGCAAGCAAACCGGTCGG
CTGGCGAATGCTCTAACATGTTATATTTATATAATAATTATACAAGTCTC
GACGATCCCGACGGTCCCGACGTCATATATGCCCCGATGTGTGTTCTAAT
GTGGGCATATACTGCGCTGGAATTTGTTGCTATTATACAAATATACAAAT
TTGTGACGCAAGCTAAAAGGTATTAACCAATAACCTAATTACAATATAAT
CAATTATTACGAAGTGAGCAAAAACGCATTATGATGGAACAATATCTAGT
CAAATGAGAAAATAAAAATTAAAACAACAAATATTAAGCAATGCAAAAAA
AAAAAAAAAA

RH38069.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:01:43
Subject Length Description Subject Range Query Range Score Percent Strand
stnA-RC 8171 stnA-RC 29..8171 2..8144 40670 99.9 Plus
stnA-RD 8297 stnA-RD 189..8297 36..8144 40500 99.9 Plus
stnB-RE 8297 stnB-RE 189..8297 36..8144 40500 99.9 Plus
stnA-RD 8297 stnA-RD 29..64 2..37 180 100 Plus
stnB-RE 8297 stnB-RE 29..64 2..37 180 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:57:50
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 22376811..22378634 8144..6316 9005 99.6 Minus
chrX 22417052 chrX 22386233..22387857 4406..2782 8125 100 Minus
chrX 22417052 chrX 22388628..22390070 2783..1341 7185 99.9 Minus
chrX 22417052 chrX 22390563..22391870 1343..36 6495 99.8 Minus
chrX 22417052 chrX 22381370..22382634 5670..4406 6310 99.9 Minus
chrX 22417052 chrX 22380902..22381153 5922..5671 1260 100 Minus
chrX 22417052 chrX 22378704..22378917 6316..6103 1055 99.5 Minus
chrX 22417052 chrX 22380658..22380845 6107..5920 940 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:28:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:57:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 22980719..22982550 8147..6316 9160 100 Minus
X 23542271 X 22990168..22991792 4406..2782 8125 100 Minus
X 23542271 X 22992563..22994005 2783..1341 7200 99.9 Minus
X 23542271 X 22994483..22995790 1343..36 6540 100 Minus
X 23542271 X 22985305..22986569 5670..4406 6310 99.9 Minus
X 23542271 X 22984837..22985088 5922..5671 1260 100 Minus
X 23542271 X 22982620..22982833 6316..6103 1055 99.5 Minus
X 23542271 X 22984593..22984780 6107..5920 940 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:56:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 22965811..22967642 8147..6316 9160 100 Minus
X 23527363 X 22975260..22976884 4406..2782 8125 100 Minus
X 23527363 X 22977655..22979097 2783..1341 7200 99.9 Minus
X 23527363 X 22979575..22980882 1343..36 6540 100 Minus
X 23527363 X 22970397..22971661 5670..4406 6310 99.9 Minus
X 23527363 X 22969929..22970180 5922..5671 1260 100 Minus
X 23527363 X 22967712..22967925 6316..6103 1055 99.5 Minus
X 23527363 X 22969685..22969872 6107..5920 940 100 Minus
X 23527363 X 22989704..22989739 37..2 180 100 Minus
Blast to na_te.dros performed 2019-03-16 19:57:48
Subject Length Description Subject Range Query Range Score Percent Strand
mariner2 912 mariner2 MARINER2 912bp 799..897 7443..7540 168 64.6 Plus
I-element 5371 I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). 88..143 8078..8133 127 69.6 Plus
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 6160..6347 7963..8142 126 57.9 Plus

RH38069.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:58:37 Download gff for RH38069.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 22376811..22378634 6316..8144 96 <- Minus
chrX 22378705..22378915 6105..6315 99 <- Minus
chrX 22380661..22380842 5923..6104 100 <- Minus
chrX 22380902..22381153 5671..5922 100 <- Minus
chrX 22381370..22382633 4407..5670 99 <- Minus
chrX 22386233..22387855 2784..4406 100 <- Minus
chrX 22388628..22390068 1343..2783 99 <- Minus
chrX 22390564..22391868 38..1342 99 <- Minus
chrX 22400693..22400728 1..37 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:12:07 Download gff for RH38069.complete
Subject Subject Range Query Range Percent Splice Strand
stnB-RB 1..3783 2672..6460 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:57:03 Download gff for RH38069.complete
Subject Subject Range Query Range Percent Splice Strand
stnB-RF 1..3789 2672..6460 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:36:23 Download gff for RH38069.complete
Subject Subject Range Query Range Percent Splice Strand
stnB-RE 1..3789 2672..6460 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:57:59 Download gff for RH38069.complete
Subject Subject Range Query Range Percent Splice Strand
stnB-RB 1..3783 2672..6460 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:47:53 Download gff for RH38069.complete
Subject Subject Range Query Range Percent Splice Strand
stnB-RE 1..3789 2672..6460 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:12:06 Download gff for RH38069.complete
Subject Subject Range Query Range Percent Splice Strand
stnB-RA 1..8137 2..8144 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:57:02 Download gff for RH38069.complete
Subject Subject Range Query Range Percent Splice Strand
stnA-RC 1..8143 2..8144 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:36:23 Download gff for RH38069.complete
Subject Subject Range Query Range Percent Splice Strand
stnB-RF 1..8143 2..8144 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:57:59 Download gff for RH38069.complete
Subject Subject Range Query Range Percent Splice Strand
stnB-RA 1..8137 2..8144 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:47:53 Download gff for RH38069.complete
Subject Subject Range Query Range Percent Splice Strand
stnB-RF 2..8144 2..8144 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:58:37 Download gff for RH38069.complete
Subject Subject Range Query Range Percent Splice Strand
X 22980722..22982550 6316..8144 100 <- Minus
X 22982621..22982831 6105..6315 99 <- Minus
X 22984596..22984777 5923..6104 100 <- Minus
X 22984837..22985088 5671..5922 100 <- Minus
X 22985305..22986568 4407..5670 99 <- Minus
X 22990168..22991790 2784..4406 100 <- Minus
X 22992563..22994003 1343..2783 99 <- Minus
X 22994484..22995788 38..1342 100 <- Minus
X 23004612..23004647 1..37 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:58:37 Download gff for RH38069.complete
Subject Subject Range Query Range Percent Splice Strand
X 22980722..22982550 6316..8144 100 <- Minus
X 22982621..22982831 6105..6315 99 <- Minus
X 22984596..22984777 5923..6104 100 <- Minus
X 22984837..22985088 5671..5922 100 <- Minus
X 22985305..22986568 4407..5670 99 <- Minus
X 22990168..22991790 2784..4406 100 <- Minus
X 22992563..22994003 1343..2783 99 <- Minus
X 22994484..22995788 38..1342 100 <- Minus
X 23004612..23004647 1..37 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:58:37 Download gff for RH38069.complete
Subject Subject Range Query Range Percent Splice Strand
X 22980722..22982550 6316..8144 100 <- Minus
X 22982621..22982831 6105..6315 99 <- Minus
X 22984596..22984777 5923..6104 100 <- Minus
X 22984837..22985088 5671..5922 100 <- Minus
X 22985305..22986568 4407..5670 99 <- Minus
X 22990168..22991790 2784..4406 100 <- Minus
X 22992563..22994003 1343..2783 99 <- Minus
X 22994484..22995788 38..1342 100 <- Minus
X 23004612..23004647 1..37 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:36:23 Download gff for RH38069.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 22386673..22386924 5671..5922 100 <- Minus
arm_X 22382558..22384386 6316..8144 100 <- Minus
arm_X 22384457..22384667 6105..6315 99 <- Minus
arm_X 22386432..22386613 5923..6104 100 <- Minus
arm_X 22387141..22388404 4407..5670 99 <- Minus
arm_X 22392004..22393626 2784..4406 100 <- Minus
arm_X 22394399..22395839 1343..2783 99 <- Minus
arm_X 22396320..22397624 38..1342 100 <- Minus
arm_X 22406448..22406483 1..37 97   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:33:34 Download gff for RH38069.complete
Subject Subject Range Query Range Percent Splice Strand
X 22965814..22967642 6316..8144 100 <- Minus
X 22967713..22967923 6105..6315 99 <- Minus
X 22969688..22969869 5923..6104 100 <- Minus
X 22969929..22970180 5671..5922 100 <- Minus
X 22970397..22971660 4407..5670 99 <- Minus
X 22975260..22976882 2784..4406 100 <- Minus
X 22977655..22979095 1343..2783 99 <- Minus
X 22979576..22980880 38..1342 100 <- Minus
X 22989704..22989739 1..37 97   Minus

RH38069.pep Sequence

Translation from 66 to 2618

> RH38069.pep
MLKLPKGLKKKKKKSKKDQELFTEEELEQYKRDLKAKQEAAATKSDAGES
DGASSDVEAHHEPVAFNSGLGSGSSSSILNAQQQLSDQNQGAAGGDEEWA
KFKALTSGVDSILHKTQDELDRIKKESFYQRLPSAAEKKKQKEEEAARLE
AEQQEREKQRLGQIEAQRDKLAEAVVQLSESEEEAGDYEADDIFATDYIE
AITSGELQLAVVPDSPVLAEDGPDPFDTAYAEKVIVGADRAKGNKKLVSL
GAAVEVLSGRVDREHAVALANPKRKLRKGIQNLLLSESIELADSEAELLA
ATSNAEPQHNLLDDLDEELSESSVPIDLSVSLHLHLIKHKQPVEEEEELE
QKGRENQLLNPDLSEFDSLKDEEDDEFAELAAESLTKKEEVTVVSQVVLP
VAQLPTEAFEAGSWAEFEEQSGQEPGKPKRPPPPVRPPTGPHIVPGAIYV
SEDEEENPEDDPFNTNYAEQVIKKTTVLEEDDDFDPRAEEHATEPPFLAA
PQRDLLAGSATDLSQVVPAPLAPTLSVDQEAEDFDPFDTSAVSALVQPKS
TELRFLERELLNYSGLDGVTLKHSLSDQDFDPRADQKEPAAPQVKLEQKE
TDFDTAQRKSSLSLNIQAKSVGFLVPASDLLGAGNELGASKKPLTPYYAP
SDNRLQEREREAEDVDPFDTSHVPEAKLSDIELKHIEKDLISVPANLRHS
LSDPDFDPRAPPTPVPAEVLLAVEENINIKVLTPAQDRKKLTNSGGSGKS
EEDIDPFDTSIAANLQPGQTELKLLENELLPETKTLVTDVLDVQSDAQEL
GLGDKVLTPSTHSRPSLPAQDIDPFDTSIAENLAPGEAEIKLLESELIER
*

RH38069.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:25:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22154-PA 875 GF22154-PA 18..875 18..850 2766 77.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:25:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17500-PA 848 GG17500-PA 18..848 18..850 3491 92.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:25:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12860-PA 849 GH12860-PA 18..849 18..850 2479 69.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:16:32
Subject Length Description Subject Range Query Range Score Percent Strand
stnA-PF 850 CG12500-PF 1..850 1..850 4279 100 Plus
stnA-PE 850 CG12500-PE 1..850 1..850 4279 100 Plus
stnA-PD 850 CG12500-PD 1..850 1..850 4279 100 Plus
stnA-PC 850 CG12500-PC 1..850 1..850 4279 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:25:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14951-PA 848 GI14951-PA 18..848 18..850 2509 72 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:25:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16535-PA 886 GL16535-PA 18..886 18..850 2491 71.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:25:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23085-PA 886 GA23085-PA 18..886 18..850 2493 71.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:25:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10052-PA 850 GM10052-PA 18..850 18..850 3569 94.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:25:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17269-PA 691 GD17269-PA 170..690 329..849 2184 93.3 Plus
Dsim\GD17269-PA 691 GD17269-PA 18..172 18..172 599 94.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:25:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18921-PA 845 GJ18921-PA 18..845 18..850 2473 71.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:25:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20027-PA 832 GK20027-PA 18..832 18..850 2183 67.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:25:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15256-PA 848 GE15256-PA 18..848 18..850 3451 90.6 Plus

RH38069.hyp Sequence

Translation from 2671 to 6459

> RH38069.hyp
MANPFLMDEDLDGCDAAANPFLMQSEPEPSSDNPFMAATVASNPFAFGAD
DLELGAEPEAEATHDNDLDPAMSFFGTTIEAEDDTLSLKSGAEEEDEGKK
PPQSQPQLQSHAHPHPPPPRPLVPPQSTQDLISTVSSQLDETSSELLGRI
PATRSPSPVSMRDLHSPSPTPDSGLADLLDVSVDSGSSAHTQGIEADLIS
GVAGGVRLDNPFAVPTAVPNIQAAVPLPATPIKQPPRPPPPRPAPPRPAP
PGQAAPQRPPPPLAAVNPPPAAPEADDLLDMFGTTACKPAKPPPPKSKED
ILSLFEQPHVPLSQPASKPDLLHDDLDETIGEGEPPEQEEPDTEQSNEIS
SRDEPVFTSLLIRPDESTHDITSQPQAATGLERQVNNMAAPSGTASTQRA
TTPDIEITTVEDLPRSDDEDEPEAMQEPETETKPQIEPDTEPEIVSEHSP
PTERLVTQAALVDGELIAAEPEPEEMDTGLDFPLASSGQLSANPFASPDE
EEPNFAPMPAAVANIFAVNDPDSQMETPKAPSHTANIFASDPDEFDAFSA
KFDSVKKDNISIMDGFGGSGAITPTGGDAWGGSAFGSTTISANACGDTNS
ADDGFGNDDDDFYAMQAPARADSVESVDKDFSVVIRPMAEETSGVAPQLA
PPPPPARGVNQAQTTSLPGLTVNPFEDVSGFPAPGLPPTDGTAIKRTDSQ
DTPQTPLYDEDVSQPLEEFPRLHYIGPGWEMQLRQPNKKKITGQRFWKKI
VVRLVVQNDVPVVQLLNQAGDKQPFQELPLQPSYSVSEIGAQQYDQFGKI
FTMKLQYIFYKERPGVRPGQVTKAERITNKLTKFAQYAIAGDYEGVKEFG
SDLKKLGLPVEHAPQSSQLFKIGSMNYEDMKQFSVCIEEALFKIPALRER
ALTYKMEEVQVTAVDEITVEQDFEGKILKQIARVRLFFLAFLTGMPTIEL
GVNDMWRQGKEVVGRHDIIPVATEEWIRLEAVEFHSVVNQKEYERTRTIK
FQPPDANYIELLRFRVRPPKNRELPLQLKATWCVSGNKVELRADILVPGF
TSRKLGQIPCEDVSVRFPIPECWIYLFRVEKHFRYGSVKSAHRRTGKIKG
IERILGAVDTLQESLIEVTSGQAKYEHHHRAIVWRCPRLPKEGQGAYTTH
QLVCRMALTSYDQIPSELAPYAFVEFTMPATQVSHTTVRSVSVQDSDGDE
PPEKYVRYLARHEYKVGIETTHGESTNAYLAATRPIREEPPTTATKPTAS
PVAPSDSDTDSN*

RH38069.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:59:11
Subject Length Description Subject Range Query Range Score Percent Strand
stnB-PG 1262 CG12473-PG 1..1262 1..1262 6620 100 Plus
stnB-PF 1262 CG12473-PF 1..1262 1..1262 6620 100 Plus
stnB-PE 1262 CG12473-PE 1..1262 1..1262 6620 100 Plus
stnB-PH 1241 CG12473-PH 1..1241 1..1262 6481 98.3 Plus