BDGP Sequence Production Resources |
Search the DGRC for RH38235
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 382 |
Well: | 35 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG9812-RB |
Protein status: | RH38235.pep: validated full length |
Preliminary Size: | 1484 |
Sequenced Size: | 1315 |
Gene | Date | Evidence |
---|---|---|
CG9812 | 2002-01-01 | Sim4 clustering to Release 2 |
CG9812 | 2002-03-20 | Blastp of sequenced clone |
CG9812 | 2003-01-01 | Sim4 clustering to Release 3 |
CG9812 | 2008-04-29 | Release 5.5 accounting |
CG9812 | 2008-08-15 | Release 5.9 accounting |
CG9812 | 2008-12-18 | 5.12 accounting |
1315 bp (1315 high quality bases) assembled on 2002-03-20
GenBank Submission: AY094922
> RH38235.complete GACATTTCCAGTTTAGCCAGGCATTACAAGCACCAGAAATTTCCCACTCC CCGCGGCAGAATTCAAGTTTAAGCCCGGCTCAAGCCACTCGACCACTCAG TTCACAGCGGAATCGCGTCGCGTCAACAACGTACAGCTCAGACTCAAACT CAGACTCAGACTCGCGAAGTGAAATAATTTAAAACAATAACAACGAAAAG CGTCTAGGAAAGGTGCGCAGTATGTTCGTCTTACTCGGAGCACTCTGTCT GCTGCAGACGGCTAGCTTGGTGCCGGCACAGCTGTTTACTTTCCGCGATG GCAAGGTGGGCGTGAACTTCGCAGGATATCACGCAGATGCGGGACTCGGC GGACTCCTTACGGGCAACTCTGCCCACGGCGGACTCAGCGCCTCGGCCGG AACACCTTGGGGCTCCCGGGCAGCCGCCGGTCTGGGCGGCAATCTGGATG GACGCACAGCCGGCGTGGGATACGCCGCCGCCCAGGCCAATCCCTCGGTG GGAGCCAGTGCGCTTCTGGGCGGCAGCGCCGGTGAACATGGTTATATCGG AGCCGAGGCGCACAGTCCTGGTCGCACTGTGATCTCCTCCTCGCAGCACT CAGTCCAGCCGGCATATCCTGCTGATCCTGTGCCCGTCTCACCCACCACC GGCCCCGTCGTCACCAGCCACATCCAAAAGGTCAAGCCGCCCAAGAAGTA CTCGCTGATCAACCAAGATGCAAGGAGCGAGGCCAAGGTGGTCCAGGCCC ACAAGTACAAGTCCGTCCAGCGACCCCAGGCCGTGAACAATCGCTTCCTG GCGCCCCAGGCCCAATGACCCGTGGGCCTGGCCCTCGATATTCCCATTGG CATCCTGCGCTCCCTGAGCAATCCTTGGGCGCCCTGGGCGGTGGCGGTCA GCAGCCAGCAGCTGCAGCTGCAGTTGCAGGTGCTCAGGCCAATGCGCACA ACCACTAGAGATATAATTTCGAGATTCGTACGACCTCTGAAGCATCAAAG ATACAGGAGGAATTAATAAAGCATCTGCACACTGGACAGAATAAATTCGA TTGAGCAGAGATACATAACAGTATGATTTGCCATTAGTCATTACCCAAAA TCAAGCTACGAGCTGAGAAAGCAAATTATTTGCTGACAACAGTGAATACA CATATCCAAGGAATGTACCAATTCAATAAAAGTTAAATTTCATTATGACA AATTAAGTAAGGTGCAAACCTCTAAAAAATTCACTTACATTGCTAGTCTA CACATAACTTGTTTGATTGCCAATAAATATGATTTTTTTTTTCACTTAAA AAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG9812.a | 1678 | CG9812.a | 194..1491 | 2..1298 | 6450 | 99.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 19298673..19299126 | 1290..840 | 2080 | 98.2 | Minus |
chr2R | 21145070 | chr2R | 19300825..19301099 | 724..450 | 1300 | 98.2 | Minus |
chr2R | 21145070 | chr2R | 19305791..19306003 | 214..2 | 1065 | 100 | Minus |
chr2R | 21145070 | chr2R | 19301164..19301336 | 451..279 | 865 | 100 | Minus |
chr2R | 21145070 | chr2R | 19299346..19299465 | 839..720 | 585 | 99.2 | Minus |
chr2R | 21145070 | chr2R | 19305546..19305616 | 281..211 | 355 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 23412335..23412794 | 1298..840 | 2250 | 99.8 | Minus |
2R | 25286936 | 2R | 23414492..23414766 | 724..450 | 1360 | 99.6 | Minus |
2R | 25286936 | 2R | 23419472..23419684 | 214..2 | 1065 | 100 | Minus |
2R | 25286936 | 2R | 23414831..23415003 | 451..279 | 865 | 100 | Minus |
2R | 25286936 | 2R | 23413014..23413133 | 839..720 | 600 | 100 | Minus |
2R | 25286936 | 2R | 23419227..23419297 | 281..211 | 355 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 23413534..23413993 | 1298..840 | 2260 | 99.7 | Minus |
2R | 25260384 | 2R | 23415691..23415965 | 724..450 | 1360 | 99.6 | Minus |
2R | 25260384 | 2R | 23420671..23420883 | 214..2 | 1065 | 100 | Minus |
2R | 25260384 | 2R | 23416030..23416202 | 451..279 | 865 | 100 | Minus |
2R | 25260384 | 2R | 23414213..23414332 | 839..720 | 600 | 100 | Minus |
2R | 25260384 | 2R | 23420426..23420496 | 281..211 | 355 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
rover | 7318 | rover ROVER 7318bp | 490..540 | 142..193 | 122 | 73.1 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 19305793..19306003 | 1..212 | 99 | Minus | |
chr2R | 19298668..19299126 | 840..1297 | 98 | <- | Minus |
chr2R | 19299346..19299465 | 720..839 | 99 | <- | Minus |
chr2R | 19300830..19301098 | 451..719 | 98 | <- | Minus |
chr2R | 19301165..19301333 | 282..450 | 100 | <- | Minus |
chr2R | 19305546..19305614 | 213..281 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9812-RB | 1..738 | 222..958 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9812-RB | 1..738 | 222..958 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9812-RB | 1..738 | 222..958 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9812-RB | 1..738 | 222..958 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9812-RB | 1..738 | 222..958 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9812-RB | 1..1297 | 2..1297 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9812-RB | 1..1297 | 2..1297 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9812-RB | 1..1297 | 2..1297 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9812-RB | 1..1297 | 2..1297 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9812-RB | 1..1297 | 2..1297 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23414832..23415000 | 282..450 | 100 | <- | Minus |
2R | 23419227..23419295 | 213..281 | 100 | <- | Minus |
2R | 23412336..23412794 | 840..1297 | 99 | <- | Minus |
2R | 23413014..23413133 | 720..839 | 100 | <- | Minus |
2R | 23414497..23414765 | 451..719 | 100 | <- | Minus |
2R | 23419474..23419684 | 1..212 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23414832..23415000 | 282..450 | 100 | <- | Minus |
2R | 23419227..23419295 | 213..281 | 100 | <- | Minus |
2R | 23412336..23412794 | 840..1297 | 99 | <- | Minus |
2R | 23413014..23413133 | 720..839 | 100 | <- | Minus |
2R | 23414497..23414765 | 451..719 | 100 | <- | Minus |
2R | 23419474..23419684 | 1..212 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23414832..23415000 | 282..450 | 100 | <- | Minus |
2R | 23419227..23419295 | 213..281 | 100 | <- | Minus |
2R | 23412336..23412794 | 840..1297 | 99 | <- | Minus |
2R | 23413014..23413133 | 720..839 | 100 | <- | Minus |
2R | 23414497..23414765 | 451..719 | 100 | <- | Minus |
2R | 23419474..23419684 | 1..212 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 19299859..19300317 | 840..1297 | 99 | <- | Minus |
arm_2R | 19300537..19300656 | 720..839 | 100 | <- | Minus |
arm_2R | 19302020..19302288 | 451..719 | 100 | <- | Minus |
arm_2R | 19302355..19302523 | 282..450 | 100 | <- | Minus |
arm_2R | 19306750..19306818 | 213..281 | 100 | <- | Minus |
arm_2R | 19306997..19307207 | 1..212 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23413553..23414011 | 840..1297 | 99 | <- | Minus |
2R | 23414231..23414350 | 720..839 | 100 | <- | Minus |
2R | 23415714..23415982 | 451..719 | 100 | <- | Minus |
2R | 23416049..23416217 | 282..450 | 100 | <- | Minus |
2R | 23420444..23420512 | 213..281 | 100 | <- | Minus |
2R | 23420691..23420901 | 1..212 | 99 | Minus |
Translation from 221 to 817
> RH38235.pep MFVLLGALCLLQTASLVPAQLFTFRDGKVGVNFAGYHADAGLGGLLTGNS AHGGLSASAGTPWGSRAAAGLGGNLDGRTAGVGYAAAQANPSVGASALLG GSAGEHGYIGAEAHSPGRTVISSSQHSVQPAYPADPVPVSPTTGPVVTSH IQKVKPPKKYSLINQDARSEAKVVQAHKYKSVQRPQAVNNRFLAPQAQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11851-PA | 328 | GF11851-PA | 1..177 | 1..177 | 713 | 80.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20033-PA | 333 | GG20033-PA | 1..176 | 1..177 | 771 | 86 | Plus |
Dere\GG20033-PA | 333 | GG20033-PA | 252..283 | 166..197 | 146 | 87.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20659-PA | 279 | GH20659-PA | 1..254 | 1..198 | 508 | 51.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG9812-PE | 245 | CG9812-PE | 1..198 | 1..198 | 1018 | 100 | Plus |
CG9812-PB | 245 | CG9812-PB | 1..198 | 1..198 | 1018 | 100 | Plus |
CG9812-PD | 332 | CG9812-PD | 1..191 | 1..193 | 873 | 89.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19022-PA | 327 | GI19022-PA | 1..171 | 1..167 | 507 | 68.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17564-PA | 275 | GL17564-PA | 1..235 | 1..197 | 617 | 59.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA22052-PB | 243 | GA22052-PB | 1..203 | 1..197 | 766 | 75.8 | Plus |
Dpse\GA22052-PA | 329 | GA22052-PA | 1..179 | 1..177 | 679 | 76.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15546-PA | 329 | GM15546-PA | 1..191 | 1..193 | 831 | 87.6 | Plus |
Dsec\GM15546-PA | 329 | GM15546-PA | 248..280 | 166..198 | 166 | 97 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25050-PA | 331 | GD25050-PA | 1..176 | 1..177 | 819 | 91 | Plus |
Dsim\GD25050-PA | 331 | GD25050-PA | 250..282 | 166..198 | 166 | 97 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19988-PA | 323 | GJ19988-PA | 38..184 | 20..165 | 473 | 74.1 | Plus |
Dvir\GJ19987-PA | 171 | GJ19987-PA | 1..168 | 1..165 | 463 | 68.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK23058-PA | 318 | GK23058-PA | 1..164 | 1..167 | 610 | 78.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE11570-PA | 254 | GE11570-PA | 1..241 | 1..198 | 860 | 74.7 | Plus |
Translation from 221 to 817
> RH38235.hyp MFVLLGALCLLQTASLVPAQLFTFRDGKVGVNFAGYHADAGLGGLLTGNS AHGGLSASAGTPWGSRAAAGLGGNLDGRTAGVGYAAAQANPSVGASALLG GSAGEHGYIGAEAHSPGRTVISSSQHSVQPAYPADPVPVSPTTGPVVTSH IQKVKPPKKYSLINQDARSEAKVVQAHKYKSVQRPQAVNNRFLAPQAQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG9812-PE | 245 | CG9812-PE | 1..198 | 1..198 | 1018 | 100 | Plus |
CG9812-PB | 245 | CG9812-PB | 1..198 | 1..198 | 1018 | 100 | Plus |
CG9812-PD | 332 | CG9812-PD | 1..191 | 1..193 | 873 | 89.1 | Plus |