Clone RH38923 Report

Search the DGRC for RH38923

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:389
Well:23
Vector:pFlc-1
Associated Gene/TranscriptEtf-QO-RA
Protein status:RH38923.pep: gold
Preliminary Size:2137
Sequenced Size:2316

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12140 2002-01-01 Sim4 clustering to Release 2
CG12140 2002-04-19 Blastp of sequenced clone
CG12140 2003-01-01 Sim4 clustering to Release 3
CG12140 2008-04-29 Release 5.5 accounting
CG12140 2008-08-15 Release 5.9 accounting
CG12140 2008-12-18 5.12 accounting

Clone Sequence Records

RH38923.complete Sequence

2316 bp (2316 high quality bases) assembled on 2002-04-19

GenBank Submission: AY113586

> RH38923.complete
GACTCATTCTTATCGCCCAGCTGTAAGCATTAAGAAACCGCTGGCTTAAG
AATAGAAACCAAACAGCTTTATTTTTCAGTTTGATTAGTTTATTTCGATT
CCAAGTTGGTAATCTCTAGTGCTGAATACACATAGGCGAACAGTAAATAC
TGCCAACGAACTTTGGACGGAGCTACGTCATCTGGTGGACGGGTCTAAAG
TCCAACTTGTTGCACCGATCTCGTTGTTTGTGTTGTGTTTTGGATTGGAA
TAAACACAACATCATACACACATACGTAAATAGGAACAGTTTACAGTGAA
CTTCTGCAACTCTAGAACTATTCCCACTGTTAAACCGCTATTATCAGGAA
AAGGAGCGAAAAATGTCGGCACTCATGAAAATGCACAGAGTTCGGAGACT
CTTCAGCCCCGCTCTGGCTCGCAGCATCTCCGATGTGGCCAAATATCCCA
GGATAACCACCCACTATACGCTGAATCCCCGCGAGAAGGATGAGCGCTGG
ACGGAAGTGGATATGGAGCGTTGTGTTGAGGAGGTGGACCTGGTCATCGT
CGGTGGAGGACCTGCTGGAATGTCGGCGGCTATTAGGGCGAAGCAACTGG
CGGCGGAAAAGGATCAGGAAATCCGCGTCTGCGTAGTGGAAAAGGCCGCC
GAAGTTGGCGGACATATTCTCTCCGGCGCCGTCATAGATCCAATCTCGCT
GAACGAGCTTATCCCGGACTGGCAAGAGCAGGGAGCTCCTCTAAACACAC
CCGTGACCAAGGATACTTTCTCCTTCCTCACCGGATCCGGCCGCATCTCC
ATTCCGGTCTTTAAGGGCTGGCCCATGGACAACCATGGCAACTACGTAGT
TCGCTTGGGCCACTTGGTCAAGTGGCTTGGAGATCAGGCGGAGGCTCTGG
GCGTGGAGATCTATCCCGGCTGTGCTGCCTCCGAGGTGCTCTTCCACGAG
GATGGCAGTGTCAAGGGCATTGCCACCAACGATGTGGGCATTGCCAAGAG
CGGAGCTCCCAAGGACACCTTTGCACGTGGCATGGAGTTGCACGCCAAGA
CTACCATCTTTGCCGAAGGCTGCCGGGGTCACCTGACCAAGCAGATTATG
CAGAAGTTCGGACTTAACGAGGGCAGCGAACCACAGGCCTATGGAATCGG
TCTGAAAGAGGTCTGGGAGATTGCCCCCGAGAAGCATCAACCTGGTTTGG
TGGAGCATACCATTGGCTGGCCTTTGGACCGCTTCACATATGGCGGCTCC
TTCTTGTACCATTTGAACGAGCCCACACCCACCATTGCAGTGGGCTTTGT
GGTGGGCTTGAACTACAAGAACCCCTGGCTCAGTCCCTTCCAGGAGTTCC
AGCGTTTCAAGACGCATCCCAAGGTGCGAGACGTCTTCGAGGGCGCCACT
CGAATTGCCTATGGAGCACGAGCAATCAATGAGGGTGGCTTCCAAAGTCT
GCCGCAGAAGCTGTCCTTTCCGGGAGGTTGCCTTGTGGGCTGCAGTGCTG
GCTTTTTGAATGTCCCTCGCATTAAGGGCTCCCATTACGCGATGAAGAGC
GGCATGCTGGCGGCGGAGAGTGCCTTTGAAGCCATCAATGCGGATGCACA
ATCGACGGCTGGTGTGGAACCCACAGGCTATGCGGAGAAAATCAAGGACT
CCTTTGTATGGAAGGATCTGTACAGTGTGCGAAATGTGCACCCTTCTTTC
CACAATCCATTGGGACTGTACGGTGGTCTTGTGCTCAGTGGCTTCTCCAT
TTTCATGGGCGGTCGGGAACCATGGACCCTAAAACACGGTCCCCAGGATC
ACGAGTCCTTGAAGCCAGCTAGCTCCTGCCCGCCCATTGTTTACCCCAAG
CCCGATGGCAAGATCTCCTTCGATCTGCTGTCTTCGGTAGCACTGACGGG
CACAAACCACGAGGGCGACCAGCCCGCCCATCTGACCCTCAAGGACGACC
GCATCCCCGTGGACCATAATTTGGCGCTGTACGAGGGACCCGAGCAGAGA
TTCTGCCCCGCTGGCGTTTACGAGTACGTGCCCAACGAGGAGGGCGGCAA
CATGAAGCTGCAAATTAACGCCCAGAACTGCATCCACTGCAAGACCTGTG
ATATCAAGGACCCCAAGCAGAACATCAACTGGGTGGTGCCCGAGGGAGGT
GGCGGTCCCGCCTACAACGGCATGTGAAAGGATAACTATCGCAGCCAATC
CGTGTACCGCAATTGCATTTCATTAGTTTTTAAAGTTGAGAATTTGAACT
TATGATTCGGAATTAAGCCTAAAGTTGCAATAAAATTGTAAGAAAAAGCC
AAAAAAAAAAAAAAAA

RH38923.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:15:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG12140-RA 2328 CG12140-RA 26..2322 2..2298 11485 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:33:46
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 5800330..5800988 1640..2298 3280 99.8 Plus
chr2R 21145070 chr2R 5799177..5799750 616..1189 2855 99.8 Plus
chr2R 21145070 chr2R 5799816..5800265 1190..1639 2235 99.8 Plus
chr2R 21145070 chr2R 5798397..5798784 2..390 1865 99.2 Plus
chr2R 21145070 chr2R 5798894..5799123 389..618 1135 99.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:28:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:33:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9912828..9913486 1640..2298 3295 100 Plus
2R 25286936 2R 9911675..9912248 616..1189 2870 100 Plus
2R 25286936 2R 9912314..9912763 1190..1639 2250 100 Plus
2R 25286936 2R 9910894..9911282 2..390 1945 100 Plus
2R 25286936 2R 9911392..9911621 389..618 1150 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:45:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 9914027..9914685 1640..2298 3295 100 Plus
2R 25260384 2R 9912874..9913447 616..1189 2870 100 Plus
2R 25260384 2R 9913513..9913962 1190..1639 2250 100 Plus
2R 25260384 2R 9912093..9912481 2..390 1945 100 Plus
2R 25260384 2R 9912591..9912820 389..618 1150 100 Plus
Blast to na_te.dros performed 2019-03-15 20:33:45
Subject Length Description Subject Range Query Range Score Percent Strand
transib2 2844 transib2 TRANSIB2 2844bp 621..687 134..68 128 65.7 Minus
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 3676..3730 1860..1806 122 69.1 Minus

RH38923.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:34:30 Download gff for RH38923.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 5798396..5798784 1..390 98 -> Plus
chr2R 5798896..5799122 391..617 99 -> Plus
chr2R 5799179..5799750 618..1189 99 -> Plus
chr2R 5799816..5800265 1190..1639 99 -> Plus
chr2R 5800330..5800990 1640..2300 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:46:00 Download gff for RH38923.complete
Subject Subject Range Query Range Percent Splice Strand
CG12140-RA 1..1815 363..2177 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:06:38 Download gff for RH38923.complete
Subject Subject Range Query Range Percent Splice Strand
CG12140-RA 1..1815 363..2177 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:15:41 Download gff for RH38923.complete
Subject Subject Range Query Range Percent Splice Strand
Etf-QO-RA 1..1815 363..2177 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:55:35 Download gff for RH38923.complete
Subject Subject Range Query Range Percent Splice Strand
CG12140-RA 1..1815 363..2177 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:24:07 Download gff for RH38923.complete
Subject Subject Range Query Range Percent Splice Strand
Etf-QO-RA 1..1815 363..2177 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:44:02 Download gff for RH38923.complete
Subject Subject Range Query Range Percent Splice Strand
CG12140-RA 2..2300 2..2300 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:06:38 Download gff for RH38923.complete
Subject Subject Range Query Range Percent Splice Strand
CG12140-RA 2..2300 2..2300 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:15:41 Download gff for RH38923.complete
Subject Subject Range Query Range Percent Splice Strand
Etf-QO-RA 2..2300 2..2300 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:55:35 Download gff for RH38923.complete
Subject Subject Range Query Range Percent Splice Strand
CG12140-RA 2..2300 2..2300 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:24:07 Download gff for RH38923.complete
Subject Subject Range Query Range Percent Splice Strand
Etf-QO-RA 2..2300 2..2300 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:34:30 Download gff for RH38923.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9910893..9911282 1..390 99 -> Plus
2R 9911394..9911620 391..617 100 -> Plus
2R 9911677..9912248 618..1189 100 -> Plus
2R 9912314..9912763 1190..1639 100 -> Plus
2R 9912828..9913488 1640..2300 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:34:30 Download gff for RH38923.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9910893..9911282 1..390 99 -> Plus
2R 9911394..9911620 391..617 100 -> Plus
2R 9911677..9912248 618..1189 100 -> Plus
2R 9912314..9912763 1190..1639 100 -> Plus
2R 9912828..9913488 1640..2300 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:34:30 Download gff for RH38923.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9910893..9911282 1..390 99 -> Plus
2R 9911394..9911620 391..617 100 -> Plus
2R 9911677..9912248 618..1189 100 -> Plus
2R 9912314..9912763 1190..1639 100 -> Plus
2R 9912828..9913488 1640..2300 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:15:41 Download gff for RH38923.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5798398..5798787 1..390 99 -> Plus
arm_2R 5798899..5799125 391..617 100 -> Plus
arm_2R 5799182..5799753 618..1189 100 -> Plus
arm_2R 5799819..5800268 1190..1639 100 -> Plus
arm_2R 5800333..5800993 1640..2300 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:27:55 Download gff for RH38923.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9912092..9912481 1..390 99 -> Plus
2R 9912593..9912819 391..617 100 -> Plus
2R 9912876..9913447 618..1189 100 -> Plus
2R 9913513..9913962 1190..1639 100 -> Plus
2R 9914027..9914687 1640..2300 99   Plus

RH38923.pep Sequence

Translation from 362 to 2176

> RH38923.pep
MSALMKMHRVRRLFSPALARSISDVAKYPRITTHYTLNPREKDERWTEVD
MERCVEEVDLVIVGGGPAGMSAAIRAKQLAAEKDQEIRVCVVEKAAEVGG
HILSGAVIDPISLNELIPDWQEQGAPLNTPVTKDTFSFLTGSGRISIPVF
KGWPMDNHGNYVVRLGHLVKWLGDQAEALGVEIYPGCAASEVLFHEDGSV
KGIATNDVGIAKSGAPKDTFARGMELHAKTTIFAEGCRGHLTKQIMQKFG
LNEGSEPQAYGIGLKEVWEIAPEKHQPGLVEHTIGWPLDRFTYGGSFLYH
LNEPTPTIAVGFVVGLNYKNPWLSPFQEFQRFKTHPKVRDVFEGATRIAY
GARAINEGGFQSLPQKLSFPGGCLVGCSAGFLNVPRIKGSHYAMKSGMLA
AESAFEAINADAQSTAGVEPTGYAEKIKDSFVWKDLYSVRNVHPSFHNPL
GLYGGLVLSGFSIFMGGREPWTLKHGPQDHESLKPASSCPPIVYPKPDGK
ISFDLLSSVALTGTNHEGDQPAHLTLKDDRIPVDHNLALYEGPEQRFCPA
GVYEYVPNEEGGNMKLQINAQNCIHCKTCDIKDPKQNINWVVPEGGGGPA
YNGM*

RH38923.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:13:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13564-PA 604 GF13564-PA 1..604 1..604 3065 92.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:13:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24120-PA 604 GG24120-PA 1..604 1..604 3206 98.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:13:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20249-PA 604 GH20249-PA 1..604 1..604 2984 90.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:50:47
Subject Length Description Subject Range Query Range Score Percent Strand
Etf-QO-PB 604 CG12140-PB 1..604 1..604 3244 100 Plus
Etf-QO-PA 604 CG12140-PA 1..604 1..604 3244 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:13:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19419-PA 604 GI19419-PA 1..604 1..604 3025 91.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:13:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16763-PA 604 GL16763-PA 1..604 1..604 3102 93.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:13:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11432-PA 604 GA11432-PA 1..604 1..604 3102 93.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:13:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21168-PA 604 GM21168-PA 1..604 1..604 3225 99.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:13:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10700-PA 418 GD10700-PA 1..417 1..425 2121 94.8 Plus
Dsim\GD10701-PA 164 GD10701-PA 16..164 456..604 810 99.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:13:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22483-PA 604 GJ22483-PA 1..604 1..604 3023 91.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:13:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15743-PA 604 GK15743-PA 1..604 1..604 3050 92.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:13:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19317-PA 604 GE19317-PA 1..604 1..604 3198 98.3 Plus

RH38923.hyp Sequence

Translation from 362 to 2176

> RH38923.hyp
MSALMKMHRVRRLFSPALARSISDVAKYPRITTHYTLNPREKDERWTEVD
MERCVEEVDLVIVGGGPAGMSAAIRAKQLAAEKDQEIRVCVVEKAAEVGG
HILSGAVIDPISLNELIPDWQEQGAPLNTPVTKDTFSFLTGSGRISIPVF
KGWPMDNHGNYVVRLGHLVKWLGDQAEALGVEIYPGCAASEVLFHEDGSV
KGIATNDVGIAKSGAPKDTFARGMELHAKTTIFAEGCRGHLTKQIMQKFG
LNEGSEPQAYGIGLKEVWEIAPEKHQPGLVEHTIGWPLDRFTYGGSFLYH
LNEPTPTIAVGFVVGLNYKNPWLSPFQEFQRFKTHPKVRDVFEGATRIAY
GARAINEGGFQSLPQKLSFPGGCLVGCSAGFLNVPRIKGSHYAMKSGMLA
AESAFEAINADAQSTAGVEPTGYAEKIKDSFVWKDLYSVRNVHPSFHNPL
GLYGGLVLSGFSIFMGGREPWTLKHGPQDHESLKPASSCPPIVYPKPDGK
ISFDLLSSVALTGTNHEGDQPAHLTLKDDRIPVDHNLALYEGPEQRFCPA
GVYEYVPNEEGGNMKLQINAQNCIHCKTCDIKDPKQNINWVVPEGGGGPA
YNGM*

RH38923.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:53:27
Subject Length Description Subject Range Query Range Score Percent Strand
Etf-QO-PB 604 CG12140-PB 1..604 1..604 3244 100 Plus
Etf-QO-PA 604 CG12140-PA 1..604 1..604 3244 100 Plus