BDGP Sequence Production Resources |
Search the DGRC for RH38923
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 389 |
Well: | 23 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Etf-QO-RA |
Protein status: | RH38923.pep: gold |
Preliminary Size: | 2137 |
Sequenced Size: | 2316 |
Gene | Date | Evidence |
---|---|---|
CG12140 | 2002-01-01 | Sim4 clustering to Release 2 |
CG12140 | 2002-04-19 | Blastp of sequenced clone |
CG12140 | 2003-01-01 | Sim4 clustering to Release 3 |
CG12140 | 2008-04-29 | Release 5.5 accounting |
CG12140 | 2008-08-15 | Release 5.9 accounting |
CG12140 | 2008-12-18 | 5.12 accounting |
2316 bp (2316 high quality bases) assembled on 2002-04-19
GenBank Submission: AY113586
> RH38923.complete GACTCATTCTTATCGCCCAGCTGTAAGCATTAAGAAACCGCTGGCTTAAG AATAGAAACCAAACAGCTTTATTTTTCAGTTTGATTAGTTTATTTCGATT CCAAGTTGGTAATCTCTAGTGCTGAATACACATAGGCGAACAGTAAATAC TGCCAACGAACTTTGGACGGAGCTACGTCATCTGGTGGACGGGTCTAAAG TCCAACTTGTTGCACCGATCTCGTTGTTTGTGTTGTGTTTTGGATTGGAA TAAACACAACATCATACACACATACGTAAATAGGAACAGTTTACAGTGAA CTTCTGCAACTCTAGAACTATTCCCACTGTTAAACCGCTATTATCAGGAA AAGGAGCGAAAAATGTCGGCACTCATGAAAATGCACAGAGTTCGGAGACT CTTCAGCCCCGCTCTGGCTCGCAGCATCTCCGATGTGGCCAAATATCCCA GGATAACCACCCACTATACGCTGAATCCCCGCGAGAAGGATGAGCGCTGG ACGGAAGTGGATATGGAGCGTTGTGTTGAGGAGGTGGACCTGGTCATCGT CGGTGGAGGACCTGCTGGAATGTCGGCGGCTATTAGGGCGAAGCAACTGG CGGCGGAAAAGGATCAGGAAATCCGCGTCTGCGTAGTGGAAAAGGCCGCC GAAGTTGGCGGACATATTCTCTCCGGCGCCGTCATAGATCCAATCTCGCT GAACGAGCTTATCCCGGACTGGCAAGAGCAGGGAGCTCCTCTAAACACAC CCGTGACCAAGGATACTTTCTCCTTCCTCACCGGATCCGGCCGCATCTCC ATTCCGGTCTTTAAGGGCTGGCCCATGGACAACCATGGCAACTACGTAGT TCGCTTGGGCCACTTGGTCAAGTGGCTTGGAGATCAGGCGGAGGCTCTGG GCGTGGAGATCTATCCCGGCTGTGCTGCCTCCGAGGTGCTCTTCCACGAG GATGGCAGTGTCAAGGGCATTGCCACCAACGATGTGGGCATTGCCAAGAG CGGAGCTCCCAAGGACACCTTTGCACGTGGCATGGAGTTGCACGCCAAGA CTACCATCTTTGCCGAAGGCTGCCGGGGTCACCTGACCAAGCAGATTATG CAGAAGTTCGGACTTAACGAGGGCAGCGAACCACAGGCCTATGGAATCGG TCTGAAAGAGGTCTGGGAGATTGCCCCCGAGAAGCATCAACCTGGTTTGG TGGAGCATACCATTGGCTGGCCTTTGGACCGCTTCACATATGGCGGCTCC TTCTTGTACCATTTGAACGAGCCCACACCCACCATTGCAGTGGGCTTTGT GGTGGGCTTGAACTACAAGAACCCCTGGCTCAGTCCCTTCCAGGAGTTCC AGCGTTTCAAGACGCATCCCAAGGTGCGAGACGTCTTCGAGGGCGCCACT CGAATTGCCTATGGAGCACGAGCAATCAATGAGGGTGGCTTCCAAAGTCT GCCGCAGAAGCTGTCCTTTCCGGGAGGTTGCCTTGTGGGCTGCAGTGCTG GCTTTTTGAATGTCCCTCGCATTAAGGGCTCCCATTACGCGATGAAGAGC GGCATGCTGGCGGCGGAGAGTGCCTTTGAAGCCATCAATGCGGATGCACA ATCGACGGCTGGTGTGGAACCCACAGGCTATGCGGAGAAAATCAAGGACT CCTTTGTATGGAAGGATCTGTACAGTGTGCGAAATGTGCACCCTTCTTTC CACAATCCATTGGGACTGTACGGTGGTCTTGTGCTCAGTGGCTTCTCCAT TTTCATGGGCGGTCGGGAACCATGGACCCTAAAACACGGTCCCCAGGATC ACGAGTCCTTGAAGCCAGCTAGCTCCTGCCCGCCCATTGTTTACCCCAAG CCCGATGGCAAGATCTCCTTCGATCTGCTGTCTTCGGTAGCACTGACGGG CACAAACCACGAGGGCGACCAGCCCGCCCATCTGACCCTCAAGGACGACC GCATCCCCGTGGACCATAATTTGGCGCTGTACGAGGGACCCGAGCAGAGA TTCTGCCCCGCTGGCGTTTACGAGTACGTGCCCAACGAGGAGGGCGGCAA CATGAAGCTGCAAATTAACGCCCAGAACTGCATCCACTGCAAGACCTGTG ATATCAAGGACCCCAAGCAGAACATCAACTGGGTGGTGCCCGAGGGAGGT GGCGGTCCCGCCTACAACGGCATGTGAAAGGATAACTATCGCAGCCAATC CGTGTACCGCAATTGCATTTCATTAGTTTTTAAAGTTGAGAATTTGAACT TATGATTCGGAATTAAGCCTAAAGTTGCAATAAAATTGTAAGAAAAAGCC AAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12140-RA | 2328 | CG12140-RA | 26..2322 | 2..2298 | 11485 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 5800330..5800988 | 1640..2298 | 3280 | 99.8 | Plus |
chr2R | 21145070 | chr2R | 5799177..5799750 | 616..1189 | 2855 | 99.8 | Plus |
chr2R | 21145070 | chr2R | 5799816..5800265 | 1190..1639 | 2235 | 99.8 | Plus |
chr2R | 21145070 | chr2R | 5798397..5798784 | 2..390 | 1865 | 99.2 | Plus |
chr2R | 21145070 | chr2R | 5798894..5799123 | 389..618 | 1135 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 9912828..9913486 | 1640..2298 | 3295 | 100 | Plus |
2R | 25286936 | 2R | 9911675..9912248 | 616..1189 | 2870 | 100 | Plus |
2R | 25286936 | 2R | 9912314..9912763 | 1190..1639 | 2250 | 100 | Plus |
2R | 25286936 | 2R | 9910894..9911282 | 2..390 | 1945 | 100 | Plus |
2R | 25286936 | 2R | 9911392..9911621 | 389..618 | 1150 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 9914027..9914685 | 1640..2298 | 3295 | 100 | Plus |
2R | 25260384 | 2R | 9912874..9913447 | 616..1189 | 2870 | 100 | Plus |
2R | 25260384 | 2R | 9913513..9913962 | 1190..1639 | 2250 | 100 | Plus |
2R | 25260384 | 2R | 9912093..9912481 | 2..390 | 1945 | 100 | Plus |
2R | 25260384 | 2R | 9912591..9912820 | 389..618 | 1150 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
transib2 | 2844 | transib2 TRANSIB2 2844bp | 621..687 | 134..68 | 128 | 65.7 | Minus |
Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 3676..3730 | 1860..1806 | 122 | 69.1 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 5798396..5798784 | 1..390 | 98 | -> | Plus |
chr2R | 5798896..5799122 | 391..617 | 99 | -> | Plus |
chr2R | 5799179..5799750 | 618..1189 | 99 | -> | Plus |
chr2R | 5799816..5800265 | 1190..1639 | 99 | -> | Plus |
chr2R | 5800330..5800990 | 1640..2300 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12140-RA | 1..1815 | 363..2177 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12140-RA | 1..1815 | 363..2177 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Etf-QO-RA | 1..1815 | 363..2177 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12140-RA | 1..1815 | 363..2177 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Etf-QO-RA | 1..1815 | 363..2177 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12140-RA | 2..2300 | 2..2300 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12140-RA | 2..2300 | 2..2300 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Etf-QO-RA | 2..2300 | 2..2300 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12140-RA | 2..2300 | 2..2300 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Etf-QO-RA | 2..2300 | 2..2300 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9910893..9911282 | 1..390 | 99 | -> | Plus |
2R | 9911394..9911620 | 391..617 | 100 | -> | Plus |
2R | 9911677..9912248 | 618..1189 | 100 | -> | Plus |
2R | 9912314..9912763 | 1190..1639 | 100 | -> | Plus |
2R | 9912828..9913488 | 1640..2300 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9910893..9911282 | 1..390 | 99 | -> | Plus |
2R | 9911394..9911620 | 391..617 | 100 | -> | Plus |
2R | 9911677..9912248 | 618..1189 | 100 | -> | Plus |
2R | 9912314..9912763 | 1190..1639 | 100 | -> | Plus |
2R | 9912828..9913488 | 1640..2300 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9910893..9911282 | 1..390 | 99 | -> | Plus |
2R | 9911394..9911620 | 391..617 | 100 | -> | Plus |
2R | 9911677..9912248 | 618..1189 | 100 | -> | Plus |
2R | 9912314..9912763 | 1190..1639 | 100 | -> | Plus |
2R | 9912828..9913488 | 1640..2300 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 5798398..5798787 | 1..390 | 99 | -> | Plus |
arm_2R | 5798899..5799125 | 391..617 | 100 | -> | Plus |
arm_2R | 5799182..5799753 | 618..1189 | 100 | -> | Plus |
arm_2R | 5799819..5800268 | 1190..1639 | 100 | -> | Plus |
arm_2R | 5800333..5800993 | 1640..2300 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9912092..9912481 | 1..390 | 99 | -> | Plus |
2R | 9912593..9912819 | 391..617 | 100 | -> | Plus |
2R | 9912876..9913447 | 618..1189 | 100 | -> | Plus |
2R | 9913513..9913962 | 1190..1639 | 100 | -> | Plus |
2R | 9914027..9914687 | 1640..2300 | 99 | Plus |
Translation from 362 to 2176
> RH38923.pep MSALMKMHRVRRLFSPALARSISDVAKYPRITTHYTLNPREKDERWTEVD MERCVEEVDLVIVGGGPAGMSAAIRAKQLAAEKDQEIRVCVVEKAAEVGG HILSGAVIDPISLNELIPDWQEQGAPLNTPVTKDTFSFLTGSGRISIPVF KGWPMDNHGNYVVRLGHLVKWLGDQAEALGVEIYPGCAASEVLFHEDGSV KGIATNDVGIAKSGAPKDTFARGMELHAKTTIFAEGCRGHLTKQIMQKFG LNEGSEPQAYGIGLKEVWEIAPEKHQPGLVEHTIGWPLDRFTYGGSFLYH LNEPTPTIAVGFVVGLNYKNPWLSPFQEFQRFKTHPKVRDVFEGATRIAY GARAINEGGFQSLPQKLSFPGGCLVGCSAGFLNVPRIKGSHYAMKSGMLA AESAFEAINADAQSTAGVEPTGYAEKIKDSFVWKDLYSVRNVHPSFHNPL GLYGGLVLSGFSIFMGGREPWTLKHGPQDHESLKPASSCPPIVYPKPDGK ISFDLLSSVALTGTNHEGDQPAHLTLKDDRIPVDHNLALYEGPEQRFCPA GVYEYVPNEEGGNMKLQINAQNCIHCKTCDIKDPKQNINWVVPEGGGGPA YNGM*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13564-PA | 604 | GF13564-PA | 1..604 | 1..604 | 3065 | 92.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24120-PA | 604 | GG24120-PA | 1..604 | 1..604 | 3206 | 98.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20249-PA | 604 | GH20249-PA | 1..604 | 1..604 | 2984 | 90.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Etf-QO-PB | 604 | CG12140-PB | 1..604 | 1..604 | 3244 | 100 | Plus |
Etf-QO-PA | 604 | CG12140-PA | 1..604 | 1..604 | 3244 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19419-PA | 604 | GI19419-PA | 1..604 | 1..604 | 3025 | 91.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL16763-PA | 604 | GL16763-PA | 1..604 | 1..604 | 3102 | 93.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11432-PA | 604 | GA11432-PA | 1..604 | 1..604 | 3102 | 93.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21168-PA | 604 | GM21168-PA | 1..604 | 1..604 | 3225 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10700-PA | 418 | GD10700-PA | 1..417 | 1..425 | 2121 | 94.8 | Plus |
Dsim\GD10701-PA | 164 | GD10701-PA | 16..164 | 456..604 | 810 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22483-PA | 604 | GJ22483-PA | 1..604 | 1..604 | 3023 | 91.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15743-PA | 604 | GK15743-PA | 1..604 | 1..604 | 3050 | 92.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE19317-PA | 604 | GE19317-PA | 1..604 | 1..604 | 3198 | 98.3 | Plus |
Translation from 362 to 2176
> RH38923.hyp MSALMKMHRVRRLFSPALARSISDVAKYPRITTHYTLNPREKDERWTEVD MERCVEEVDLVIVGGGPAGMSAAIRAKQLAAEKDQEIRVCVVEKAAEVGG HILSGAVIDPISLNELIPDWQEQGAPLNTPVTKDTFSFLTGSGRISIPVF KGWPMDNHGNYVVRLGHLVKWLGDQAEALGVEIYPGCAASEVLFHEDGSV KGIATNDVGIAKSGAPKDTFARGMELHAKTTIFAEGCRGHLTKQIMQKFG LNEGSEPQAYGIGLKEVWEIAPEKHQPGLVEHTIGWPLDRFTYGGSFLYH LNEPTPTIAVGFVVGLNYKNPWLSPFQEFQRFKTHPKVRDVFEGATRIAY GARAINEGGFQSLPQKLSFPGGCLVGCSAGFLNVPRIKGSHYAMKSGMLA AESAFEAINADAQSTAGVEPTGYAEKIKDSFVWKDLYSVRNVHPSFHNPL GLYGGLVLSGFSIFMGGREPWTLKHGPQDHESLKPASSCPPIVYPKPDGK ISFDLLSSVALTGTNHEGDQPAHLTLKDDRIPVDHNLALYEGPEQRFCPA GVYEYVPNEEGGNMKLQINAQNCIHCKTCDIKDPKQNINWVVPEGGGGPA YNGM*