BDGP Sequence Production Resources |
Search the DGRC for RH39904
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 399 |
Well: | 4 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG4017-RA |
Protein status: | RH39904.pep: gold |
Preliminary Size: | 1275 |
Sequenced Size: | 1629 |
Gene | Date | Evidence |
---|---|---|
CG4017 | 2002-01-01 | Sim4 clustering to Release 2 |
CG4017 | 2002-05-31 | Blastp of sequenced clone |
CG4017 | 2003-01-01 | Sim4 clustering to Release 3 |
CG4017 | 2008-04-29 | Release 5.5 accounting |
CG4017 | 2008-08-15 | Release 5.9 accounting |
CG4017 | 2008-12-18 | 5.12 accounting |
1629 bp (1629 high quality bases) assembled on 2002-05-31
GenBank Submission: AY118431
> RH39904.complete GACTAGTGCCAATATGAAGCTACTGCTGTTGCTACTGTCGGTTAATATTC TTATTTTTTGCTTGGCTGAACGCCAGAGGTTCGACAACTACAAGGTCTAT AGAGTAAGTCCAGTGAAGGCGAATCAACTGGAGGGACTGCGATCTTTGGA GGCGAATAGCGAGGATGCTCTGGTCCTAAACAATCTGCATCTTGGGCCCA CGGATTTTCTGGTGGCGCCCGACTTCGATGGAACCTTTCTGAAACTCGTC AAAGATTTGGATCTCTCGCCTGAACTCATCGACGCGAATGCCCAAACGAG TCTATCGCTGGACATAGAGCCCATTGCGGATGCTAATCGGCGAAGTGATG ACTACTCATGGAGTGAATACCACGAACTTAACGACACGCATCGCTGGATG CAGAATCTGGTGGGGAAGTATCCGGATGTCGTCAGTGTATTTGTGGCGGG TCAGAGTTACGAGGGTCGTGAGCTGCTGGGCCTGAGGATTAATCATAACG ATGGAAGAGCTGAGAAGCAATCCATATTCTTGGAGGCCGGAATGCATGCT AGGGAATGGATTGGTCCTGCCACGGCCACCTACTTTGCTAACGAGCTACT CTCCTCTCAGCAGCAGGAGATCATGAATCTAGCCAGATCCTATGTTTGGT ACATATTGCCCCATGCCAATCCAGACGGTTATGTCTACACCCACAAAACG AATCGCATGTGGCGCAAGACAAGGAGTCCGCAGGACAAGAACTGCGTTGG AACGGATCCCAATCGTAACTGGGACTTCCACTGGCGTGAGGTGGGAGCCA GTTCTGATCCCTGCTCGGAGTCATATGCTGGACCCAAGGCGTTCTCCGAA CCTGAAGTTCAGACTCTTTCTCAGTTTTTGAAATCGGTGCCGGAACCCAT GTTCATGTTCCTCTCGCTGCACTCCTTCTCCCAATTGTTGCTATATCCCT ATGGACACACATCCGCACTGCCGGAAAATCATAGGCAGTTGGAGCAGATC TTCAATACAGCCGTGGGTGCAATGAAGCGGCGTTATGGAACTCGGTACAC TGGAGGAAATGTGTACGATGCCATATATCCGGCAGCTGGTTCCAGTATGG ATTGGGCTTATGGGGTGCTCAACGTTAAGTACTCCTTTACCTACGAGCTA CGACCGTCTGGGTATAGTTTCTGGACAGGATTTAGATTGCCCGCCGCCCA AATTATACCAACGGGTCAGGAGACCACAGATTCGTTGGTGGAAATGATTA AGGCTGCTGCTCAAATCGAGGGTTACAAAATTGAGTAGAAGAGAGAGCTT ACGACGTTTTTGTTGATAAGATTAATGAAAAGATCTGTTACTTCTGAAAA AAACTAAACGTAAGCATGTTTTGATTAAAAAGATAACTTGGACAAGCTGA TAAGATGAAAAGTCCAAATTGGCTTAAAAAGTTTTGGGTAAAAAAAATGA TTTGATTATATATTATCAATTTTGCGGACTGAAATGTTAGTTTGTGGAAC AGAATGACTTGTCAAAGTTAGAATATAAACAAAAGCTAGAGCTTATAAAT TTGGTTTAATGATGAATATAACTAATACTAAAAATGTAATTTATAAATTT CAAATATTAAGACAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG4017-RA | 1664 | CG4017-RA | 47..1663 | 1..1615 | 8015 | 99.8 | Plus |
CG17633-RA | 1349 | CG17633-RA | 678..751 | 647..720 | 220 | 86.4 | Plus |
CG17633-RA | 1349 | CG17633-RA | 934..1007 | 906..979 | 160 | 81 | Plus |
CG17633-RA | 1349 | CG17633-RA | 1073..1135 | 1045..1107 | 150 | 82.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 9766651..9767565 | 700..1613 | 4435 | 99.5 | Plus |
chr2L | 23010047 | chr2L | 9765898..9766597 | 1..700 | 3485 | 99.9 | Plus |
chr2L | 23010047 | chr2L | 9768582..9768655 | 647..720 | 220 | 86.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 9767812..9768729 | 700..1615 | 4520 | 99.6 | Plus |
2L | 23513712 | 2L | 9767059..9767758 | 1..700 | 3500 | 100 | Plus |
2L | 23513712 | 2L | 9769744..9769817 | 647..720 | 220 | 86.4 | Plus |
2L | 23513712 | 2L | 9770000..9770073 | 906..979 | 160 | 81 | Plus |
2L | 23513712 | 2L | 9770139..9770201 | 1045..1107 | 150 | 82.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 3171..3294 | 1427..1307 | 116 | 59.2 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 9765898..9766597 | 1..700 | 99 | -> | Plus |
chr2L | 9766652..9767565 | 701..1613 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4017-RA | 1..1275 | 14..1288 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4017-RA | 1..1275 | 14..1288 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4017-RA | 1..1275 | 14..1288 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4017-RA | 1..1275 | 14..1288 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4017-RA | 1..1275 | 14..1288 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4017-RA | 1..1615 | 1..1613 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4017-RA | 1..1615 | 1..1613 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4017-RA | 2..1616 | 1..1613 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4017-RA | 1..1615 | 1..1613 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4017-RA | 2..1616 | 1..1613 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9767059..9767758 | 1..700 | 100 | -> | Plus |
2L | 9767813..9768727 | 701..1613 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9767059..9767758 | 1..700 | 100 | -> | Plus |
2L | 9767813..9768727 | 701..1613 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9767059..9767758 | 1..700 | 100 | -> | Plus |
2L | 9767813..9768727 | 701..1613 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 9767059..9767758 | 1..700 | 100 | -> | Plus |
arm_2L | 9767813..9768727 | 701..1613 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9767059..9767758 | 1..700 | 100 | -> | Plus |
2L | 9767813..9768727 | 701..1613 | 99 | Plus |
Translation from 0 to 1287
> RH39904.hyp TSANMKLLLLLLSVNILIFCLAERQRFDNYKVYRVSPVKANQLEGLRSLE ANSEDALVLNNLHLGPTDFLVAPDFDGTFLKLVKDLDLSPELIDANAQTS LSLDIEPIADANRRSDDYSWSEYHELNDTHRWMQNLVGKYPDVVSVFVAG QSYEGRELLGLRINHNDGRAEKQSIFLEAGMHAREWIGPATATYFANELL SSQQQEIMNLARSYVWYILPHANPDGYVYTHKTNRMWRKTRSPQDKNCVG TDPNRNWDFHWREVGASSDPCSESYAGPKAFSEPEVQTLSQFLKSVPEPM FMFLSLHSFSQLLLYPYGHTSALPENHRQLEQIFNTAVGAMKRRYGTRYT GGNVYDAIYPAAGSSMDWAYGVLNVKYSFTYELRPSGYSFWTGFRLPAAQ IIPTGQETTDSLVEMIKAAAQIEGYKIE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG4017-PA | 424 | CG4017-PA | 1..424 | 5..428 | 2245 | 100 | Plus |
CG17633-PA | 430 | CG17633-PA | 2..419 | 2..415 | 1111 | 50 | Plus |
CG14820-PA | 416 | CG14820-PA | 1..414 | 8..423 | 745 | 37.6 | Plus |
CG7025-PA | 429 | CG7025-PA | 25..422 | 23..425 | 732 | 37.6 | Plus |
CG18585-PB | 422 | CG18585-PB | 1..421 | 5..425 | 704 | 36.2 | Plus |
Translation from 13 to 1287
> RH39904.pep MKLLLLLLSVNILIFCLAERQRFDNYKVYRVSPVKANQLEGLRSLEANSE DALVLNNLHLGPTDFLVAPDFDGTFLKLVKDLDLSPELIDANAQTSLSLD IEPIADANRRSDDYSWSEYHELNDTHRWMQNLVGKYPDVVSVFVAGQSYE GRELLGLRINHNDGRAEKQSIFLEAGMHAREWIGPATATYFANELLSSQQ QEIMNLARSYVWYILPHANPDGYVYTHKTNRMWRKTRSPQDKNCVGTDPN RNWDFHWREVGASSDPCSESYAGPKAFSEPEVQTLSQFLKSVPEPMFMFL SLHSFSQLLLYPYGHTSALPENHRQLEQIFNTAVGAMKRRYGTRYTGGNV YDAIYPAAGSSMDWAYGVLNVKYSFTYELRPSGYSFWTGFRLPAAQIIPT GQETTDSLVEMIKAAAQIEGYKIE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22809-PA | 426 | GF22809-PA | 1..424 | 1..424 | 1896 | 80.4 | Plus |
Dana\GF22810-PA | 427 | GF22810-PA | 22..415 | 18..411 | 1146 | 51.8 | Plus |
Dana\GF23551-PA | 416 | GF23551-PA | 5..414 | 4..419 | 728 | 37.6 | Plus |
Dana\GF23552-PA | 416 | GF23552-PA | 5..414 | 6..419 | 725 | 38.1 | Plus |
Dana\GF14014-PA | 428 | GF14014-PA | 1..422 | 8..421 | 709 | 36.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10054-PA | 427 | GG10054-PA | 18..427 | 15..424 | 2098 | 93.2 | Plus |
Dere\GG10055-PA | 429 | GG10055-PA | 7..418 | 3..411 | 1124 | 49.9 | Plus |
Dere\GG23518-PA | 429 | GG23518-PA | 21..422 | 15..421 | 733 | 37.8 | Plus |
Dere\GG14391-PA | 416 | GG14391-PA | 2..414 | 3..419 | 731 | 37.6 | Plus |
Dere\GG23519-PA | 422 | GG23519-PA | 1..421 | 1..421 | 722 | 37.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH25145-PA | 426 | GH25145-PA | 23..416 | 18..412 | 1104 | 49.4 | Plus |
Dgri\GH25146-PA | 426 | GH25146-PA | 23..424 | 18..421 | 1088 | 48.5 | Plus |
Dgri\GH10072-PA | 421 | GH10072-PA | 1..412 | 1..412 | 738 | 37.9 | Plus |
Dgri\GH15366-PA | 440 | GH15366-PA | 21..431 | 8..418 | 738 | 37.3 | Plus |
Dgri\GH10071-PA | 430 | GH10071-PA | 29..423 | 19..421 | 700 | 36.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG4017-PA | 424 | CG4017-PA | 1..424 | 1..424 | 2245 | 100 | Plus |
CG17633-PA | 430 | CG17633-PA | 7..419 | 3..411 | 1106 | 50.1 | Plus |
CG14820-PA | 416 | CG14820-PA | 1..414 | 4..419 | 745 | 37.6 | Plus |
CG7025-PA | 429 | CG7025-PA | 25..422 | 19..421 | 732 | 37.6 | Plus |
CG18585-PB | 422 | CG18585-PB | 1..421 | 1..421 | 704 | 36.2 | Plus |
CG18585-PA | 422 | CG18585-PA | 1..421 | 1..421 | 704 | 36.2 | Plus |
CG2915-PA | 453 | CG2915-PA | 51..453 | 19..422 | 667 | 34.4 | Plus |
CG2915-PB | 453 | CG2915-PB | 51..453 | 19..422 | 667 | 34.4 | Plus |
CG4408-PB | 467 | CG4408-PB | 68..465 | 22..421 | 660 | 35.7 | Plus |
CG4408-PA | 479 | CG4408-PA | 80..477 | 22..421 | 660 | 35.7 | Plus |
CG8560-PB | 418 | CG8560-PB | 7..415 | 3..416 | 646 | 36.9 | Plus |
CG8560-PA | 418 | CG8560-PA | 7..415 | 3..416 | 646 | 36.9 | Plus |
CG8562-PA | 424 | CG8562-PA | 1..402 | 1..397 | 627 | 36.7 | Plus |
CG3108-PA | 1132 | CG3108-PA | 762..1120 | 64..423 | 623 | 36.7 | Plus |
CG18417-PA | 427 | CG18417-PA | 6..422 | 4..417 | 622 | 35.4 | Plus |
CG12374-PA | 422 | CG12374-PA | 1..417 | 1..417 | 566 | 31.4 | Plus |
CG3097-PA | 445 | CG3097-PA | 103..427 | 84..403 | 533 | 33.8 | Plus |
CG32379-PB | 344 | CG32379-PB | 47..339 | 119..398 | 477 | 34.3 | Plus |
CG8945-PC | 1430 | CG8945-PC | 978..1427 | 20..412 | 470 | 27.9 | Plus |
CG8563-PB | 440 | CG8563-PB | 136..435 | 109..413 | 440 | 34.2 | Plus |
CG8563-PA | 440 | CG8563-PA | 136..435 | 109..413 | 440 | 34.2 | Plus |
CG42264-PB | 521 | CG42264-PB | 211..513 | 115..408 | 432 | 30.5 | Plus |
CG42264-PA | 634 | CG42264-PA | 324..626 | 115..408 | 432 | 30.5 | Plus |
CG8564-PA | 504 | CG8564-PA | 38..360 | 119..413 | 364 | 30.6 | Plus |
CG8564-PC | 520 | CG8564-PC | 54..376 | 119..413 | 364 | 30.6 | Plus |
CG8539-PB | 385 | CG8539-PB | 46..303 | 127..383 | 357 | 33 | Plus |
CG8539-PA | 385 | CG8539-PA | 46..303 | 127..383 | 357 | 33 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20130-PA | 426 | GI20130-PA | 20..423 | 15..419 | 1132 | 50.4 | Plus |
Dmoj\GI20107-PA | 426 | GI20107-PA | 23..416 | 18..412 | 1082 | 49.6 | Plus |
Dmoj\GI20119-PA | 426 | GI20119-PA | 23..426 | 18..422 | 1079 | 47.9 | Plus |
Dmoj\GI15622-PA | 426 | GI15622-PA | 23..424 | 18..421 | 911 | 42.8 | Plus |
Dmoj\GI16517-PA | 421 | GI16517-PA | 7..419 | 3..419 | 766 | 40.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18933-PA | 426 | GL18933-PA | 16..426 | 16..424 | 1781 | 77.6 | Plus |
Dper\GL18934-PA | 425 | GL18934-PA | 22..414 | 18..411 | 1094 | 49.5 | Plus |
Dper\GL18860-PA | 429 | GL18860-PA | 27..422 | 20..421 | 748 | 39.6 | Plus |
Dper\GL13278-PA | 358 | GL13278-PA | 53..356 | 115..419 | 680 | 42.9 | Plus |
Dper\GL13854-PA | 434 | GL13854-PA | 88..432 | 70..421 | 662 | 40.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17870-PA | 426 | GA17870-PA | 19..426 | 19..424 | 1764 | 77.7 | Plus |
Dpse\GA14587-PA | 425 | GA14587-PA | 22..414 | 18..411 | 1101 | 49.7 | Plus |
Dpse\GA13272-PA | 416 | GA13272-PA | 5..414 | 2..419 | 764 | 39.5 | Plus |
Dpse\GA15002-PA | 423 | GA15002-PA | 3..422 | 4..421 | 744 | 38.4 | Plus |
Dpse\GA20041-PA | 429 | GA20041-PA | 27..414 | 20..412 | 742 | 39.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17686-PA | 424 | GM17686-PA | 1..424 | 1..424 | 2219 | 96.5 | Plus |
Dsec\GM17695-PA | 429 | GM17695-PA | 7..418 | 3..411 | 1122 | 50.1 | Plus |
Dsec\GM14804-PA | 416 | GM14804-PA | 2..414 | 3..419 | 754 | 37.8 | Plus |
Dsec\GM13458-PA | 429 | GM13458-PA | 9..422 | 3..421 | 726 | 36.5 | Plus |
Dsec\GM13467-PA | 422 | GM13467-PA | 1..421 | 1..421 | 703 | 35.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23628-PA | 424 | GD23628-PA | 1..424 | 1..424 | 2221 | 96.2 | Plus |
Dsim\GD23629-PA | 430 | GD23629-PA | 7..419 | 3..411 | 1138 | 50.1 | Plus |
Dsim\GD22481-PA | 429 | GD22481-PA | 9..422 | 3..421 | 725 | 36.5 | Plus |
Dsim\GD22482-PA | 422 | GD22482-PA | 1..421 | 1..421 | 709 | 36.6 | Plus |
Dsim\GD13057-PA | 418 | GD13057-PA | 1..416 | 3..417 | 649 | 36.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13514-PA | 426 | GJ13514-PA | 23..416 | 18..412 | 1114 | 49.1 | Plus |
Dvir\GJ13502-PA | 426 | GJ13502-PA | 23..416 | 18..412 | 1086 | 49.1 | Plus |
Dvir\GJ16228-PA | 421 | GJ16228-PA | 1..420 | 1..421 | 778 | 40.1 | Plus |
Dvir\GJ16227-PA | 430 | GJ16227-PA | 27..424 | 17..421 | 767 | 40.3 | Plus |
Dvir\GJ13115-PA | 416 | GJ13115-PA | 18..414 | 18..419 | 732 | 37.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24193-PA | 421 | GK24193-PA | 19..420 | 17..419 | 1634 | 73 | Plus |
Dwil\GK24194-PA | 426 | GK24194-PA | 23..415 | 18..411 | 1111 | 51 | Plus |
Dwil\GK23953-PA | 418 | GK23953-PA | 1..415 | 1..418 | 781 | 38.9 | Plus |
Dwil\GK23952-PA | 418 | GK23952-PA | 1..415 | 1..418 | 781 | 39.9 | Plus |
Dwil\GK12561-PA | 417 | GK12561-PA | 4..413 | 3..417 | 750 | 37.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE18868-PA | 424 | GE18868-PA | 1..424 | 1..424 | 2201 | 94.6 | Plus |
Dyak\GE18869-PA | 430 | GE18869-PA | 7..420 | 3..412 | 1141 | 49.9 | Plus |
Dyak\GE18344-PA | 429 | GE18344-PA | 21..422 | 15..421 | 732 | 38 | Plus |
Dyak\GE18345-PA | 422 | GE18345-PA | 1..421 | 1..421 | 726 | 36.6 | Plus |
Dyak\GE21580-PA | 409 | GE21580-PA | 11..407 | 18..419 | 716 | 37 | Plus |