Clone RH40150 Report

Search the DGRC for RH40150

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:401
Well:50
Vector:pFlc-1
Associated Gene/TranscriptCG5854-RB
Protein status:RH40150.pep: full length peptide match
Preliminary Size:1218
Sequenced Size:1598

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5854 2002-10-18 Blastp of sequenced clone
CG5854 2003-01-01 Sim4 clustering to Release 3
CG5854 2008-04-29 Release 5.5 accounting
CG5854 2008-08-15 Release 5.9 accounting
CG5854 2008-12-18 5.12 accounting

Clone Sequence Records

RH40150.complete Sequence

1598 bp (1598 high quality bases) assembled on 2002-10-18

GenBank Submission: BT001818

> RH40150.complete
GATTCCGGTTGACCGTGTCGCGCCTGCAGCATGTCTGAAAAGCCGACTGT
TCTGATTTTGGGTGGTAAGTGGTCCCGCTGCATCCTCCTCATCGTCATCC
TGCCCCCGCTCCCCACTCCACACTTCCGCTTATCAGCATCGCTGACTGCA
TCGCTGCTCTTCCTCTTCCCGCAGGCTGCGGCTTCATTGGACGCAACTTG
GCCACTTATCTGCTGGACAATGAACTGGCGCAGGAAATACGACTGGCCGA
TAAGACCCCTCCGCAGATGGCATGGCTAAACGAGGAGCAGACGCGGGTCT
TCGAGAGCGATCGGGTGGAGTTCTGCAGCGCGAACCTAATAAACGCCGCC
TCATGCAAGGCGGCTTTTGCGCCACACCCCACCACTGGACGGGCCTGGGA
CATTGTCATCAATTGTGCGGCCGAGACGCGTGCCAACCAGGATGATGCCG
TATACAAGGAGGGTATCCTGAAGCTCAGTTTGAACTGCGCCAATGAGGCG
GCTAACCAGCGGGTCAAACGATACGTGGAACTCAGCTCTGGTTGTGTGAA
CAGCAGCGAAAAGACGCCGTTAAAAGAGGACTGCAAGACGGATCCCTGGA
CGGGCGTGGCCAAGCAGAAGCTCAAGGTGGAGAAGGAACTGGCCAACATC
GACGATCTCAGTTACACGGTCGTCCGTTTGCCCGTGGTCTATGGCATTGG
CGATAAGCGCTATTTGATGCCGCGCATTATAATCGCTGCCATATACAAAT
ACCTGAACGAGACAATGAAGCTGCTGTGGAACGATGCCATGCGTTTGAAT
ACTGTGCACGTATCGGACGTGTGCGCTGCCGTTTGGCAATTGGCTCAGAG
TCCCAAGACCGCCGGTCAGATCTACAACATCTGCGATGATTCAGCATCGA
CGCAGGGCACCATTAGTAATCTTTTAGTGGATATTTTCGACATCAATTTG
GATTTCTTCGGCCTTGTAATGTCGAATTTGGCAAAACTTTATCCCACGGA
CACCGTCAGTGAAATCAACGACAAGCACATGGCACCCTGGGCCGAGATTT
GCCAGCGCAATGGCATCGACAACACCCCGCTGACACCGTACCTAGATGAG
GAGCAGCTCCAGCACAAGCACCTCTACTTGGATAACACGAAACTGAAAGA
CTTTGGCTACGTGCTGCAGCATCCGAAAGTCACTCGCGAGCTGCTCATGG
AGATGATTAACGACTATGTGAAGCAGCAATTGTTTCCGAAATCGTTGGTT
CTTTGATTCACTACTTCTATCAAAAGATTGCACCACGTTGACATGCACTC
GGACCCGGAGACATTTATTCCCTGTAGCTTGTAATCCACTAGTTTTTTAA
ACGATTATCAAACCTCTTCCAATTTGTATACGGACACGGATACTCTCACA
TGCACGCTGTGCTGTATCTCCGTTTTTTTTAATCACAAAAGTGTACTTAT
AGTATTATAGAACCCATATATTTTTGATACATTCCAGTCGATCCAGCGAT
ATATACGTTTTTGCGTACGAGTATTCCATTGTGATTAGCTAAGTGACCAA
CCGCAATCGACAATTAAAATGCACTTGTTTAGAAAAAAAAAAAAAAAA

RH40150.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:38:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG5854.b 2042 CG5854.b 3..1584 2..1583 7910 100 Plus
CG5854-RB 1732 CG5854-RB 105..1686 2..1583 7910 100 Plus
CG5854.c 1520 CG5854.c 69..1516 136..1583 7240 100 Plus
CG5854.c 1520 CG5854.c 7..69 2..64 315 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:33:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 19758793..19759389 987..1582 2935 99.8 Plus
chr3R 27901430 chr3R 19757992..19758361 348..717 1805 99.2 Plus
chr3R 27901430 chr3R 19757427..19757773 2..348 1735 100 Plus
chr3R 27901430 chr3R 19758458..19758726 718..986 1345 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:28:44 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:33:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23935364..23935960 987..1583 2985 100 Plus
3R 32079331 3R 23934563..23934932 348..717 1850 100 Plus
3R 32079331 3R 23933998..23934344 2..348 1735 100 Plus
3R 32079331 3R 23935029..23935297 718..986 1345 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:11:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 23676195..23676791 987..1583 2985 100 Plus
3R 31820162 3R 23675394..23675763 348..717 1850 100 Plus
3R 31820162 3R 23674829..23675175 2..348 1735 100 Plus
3R 31820162 3R 23675860..23676128 718..986 1345 100 Plus
Blast to na_te.dros performed on 2019-03-15 20:33:48 has no hits.

RH40150.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:34:32 Download gff for RH40150.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 19757993..19758361 349..717 99 -> Plus
chr3R 19758458..19758726 718..986 100 -> Plus
chr3R 19757425..19757773 1..348 99 -> Plus
chr3R 19758793..19759389 987..1582 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:46:12 Download gff for RH40150.complete
Subject Subject Range Query Range Percent Splice Strand
CG5854-RA 34..1116 174..1256 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:09:58 Download gff for RH40150.complete
Subject Subject Range Query Range Percent Splice Strand
CG5854-RA 34..1116 174..1256 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:15:45 Download gff for RH40150.complete
Subject Subject Range Query Range Percent Splice Strand
CG5854-RA 34..1116 174..1256 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:00:51 Download gff for RH40150.complete
Subject Subject Range Query Range Percent Splice Strand
CG5854-RA 34..1116 174..1256 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:24:09 Download gff for RH40150.complete
Subject Subject Range Query Range Percent Splice Strand
CG5854-RA 34..1116 174..1256 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:31:04 Download gff for RH40150.complete
Subject Subject Range Query Range Percent Splice Strand
CG5854-RB 1..1583 1..1582 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:09:58 Download gff for RH40150.complete
Subject Subject Range Query Range Percent Splice Strand
CG5854-RB 1..1583 1..1582 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:15:45 Download gff for RH40150.complete
Subject Subject Range Query Range Percent Splice Strand
CG5854-RA 149..1557 174..1582 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:00:51 Download gff for RH40150.complete
Subject Subject Range Query Range Percent Splice Strand
CG5854-RB 1..1583 1..1582 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:24:09 Download gff for RH40150.complete
Subject Subject Range Query Range Percent Splice Strand
CG5854-RA 149..1557 174..1582 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:34:32 Download gff for RH40150.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23933996..23934344 1..348 99 -> Plus
3R 23934564..23934932 349..717 100 -> Plus
3R 23935029..23935297 718..986 100 -> Plus
3R 23935364..23935959 987..1582 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:34:32 Download gff for RH40150.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23933996..23934344 1..348 99 -> Plus
3R 23934564..23934932 349..717 100 -> Plus
3R 23935029..23935297 718..986 100 -> Plus
3R 23935364..23935959 987..1582 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:34:32 Download gff for RH40150.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23933996..23934344 1..348 99 -> Plus
3R 23934564..23934932 349..717 100 -> Plus
3R 23935029..23935297 718..986 100 -> Plus
3R 23935364..23935959 987..1582 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:15:45 Download gff for RH40150.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19759718..19760066 1..348 99 -> Plus
arm_3R 19760286..19760654 349..717 100 -> Plus
arm_3R 19760751..19761019 718..986 100 -> Plus
arm_3R 19761086..19761681 987..1582 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:32:24 Download gff for RH40150.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23674827..23675175 1..348 99 -> Plus
3R 23675395..23675763 349..717 100 -> Plus
3R 23675860..23676128 718..986 100 -> Plus
3R 23676195..23676790 987..1582 100   Plus

RH40150.pep Sequence

Translation from 266 to 1255

> RH40150.pep
MAWLNEEQTRVFESDRVEFCSANLINAASCKAAFAPHPTTGRAWDIVINC
AAETRANQDDAVYKEGILKLSLNCANEAANQRVKRYVELSSGCVNSSEKT
PLKEDCKTDPWTGVAKQKLKVEKELANIDDLSYTVVRLPVVYGIGDKRYL
MPRIIIAAIYKYLNETMKLLWNDAMRLNTVHVSDVCAAVWQLAQSPKTAG
QIYNICDDSASTQGTISNLLVDIFDINLDFFGLVMSNLAKLYPTDTVSEI
NDKHMAPWAEICQRNGIDNTPLTPYLDEEQLQHKHLYLDNTKLKDFGYVL
QHPKVTRELLMEMINDYVKQQLFPKSLVL*

RH40150.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:35:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17025-PA 371 GF17025-PA 43..371 1..329 1672 92.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:35:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11238-PA 371 GG11238-PA 43..371 1..329 1762 99.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:35:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21196-PA 372 GH21196-PA 43..372 1..329 1564 85.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:53:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG5854-PA 371 CG5854-PA 43..371 1..329 1728 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:35:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10482-PA 371 GI10482-PA 43..371 1..329 1560 85.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:35:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23381-PA 371 GL23381-PA 43..371 1..329 1601 87.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:35:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19181-PB 329 GA19181-PB 1..329 1..329 1606 88.1 Plus
Dpse\GA19181-PA 371 GA19181-PA 43..371 1..329 1605 88.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:35:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26540-PA 371 GM26540-PA 43..371 1..329 1766 99.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:35:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21047-PA 371 GD21047-PA 43..371 1..329 1771 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:35:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23163-PA 371 GJ23163-PA 43..371 1..329 1585 86.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:35:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11485-PA 369 GK11485-PA 43..369 1..329 1559 85.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:35:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23430-PA 371 GE23430-PA 43..371 1..329 1761 99.1 Plus

RH40150.hyp Sequence

Translation from 266 to 1255

> RH40150.hyp
MAWLNEEQTRVFESDRVEFCSANLINAASCKAAFAPHPTTGRAWDIVINC
AAETRANQDDAVYKEGILKLSLNCANEAANQRVKRYVELSSGCVNSSEKT
PLKEDCKTDPWTGVAKQKLKVEKELANIDDLSYTVVRLPVVYGIGDKRYL
MPRIIIAAIYKYLNETMKLLWNDAMRLNTVHVSDVCAAVWQLAQSPKTAG
QIYNICDDSASTQGTISNLLVDIFDINLDFFGLVMSNLAKLYPTDTVSEI
NDKHMAPWAEICQRNGIDNTPLTPYLDEEQLQHKHLYLDNTKLKDFGYVL
QHPKVTRELLMEMINDYVKQQLFPKSLVL*

RH40150.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG5854-PA 371 CG5854-PA 43..371 1..329 1728 100 Plus