Clone RH40165 Report

Search the DGRC for RH40165

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:401
Well:65
Vector:pFlc-1
Associated Gene/TranscriptCG13937-RF
Protein status:RH40165.pep: gold
Preliminary Size:1393
Sequenced Size:1762

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13937 2002-01-01 Sim4 clustering to Release 2
CG13937 2003-07-26 Blastp of sequenced clone
CG13937 2008-04-29 Release 5.5 accounting
CG13937 2008-08-15 Release 5.9 accounting
CG13937 2008-12-18 5.12 accounting

Clone Sequence Records

RH40165.complete Sequence

1762 bp (1762 high quality bases) assembled on 2003-07-26

GenBank Submission: BT009953

> RH40165.complete
GACTCGTGAAATGTGCGTTGTGCGGTGATGACGCTAACGCACATCAAACT
AAAATTAGCCAGCACGCCGTCGACAGCGATGAGAACTTACAAAATCTGTC
GCCAACTGCAGGCAAACTTTGCGGCCGCGTAGCAGCAGGAAATGTCCCAC
GACTATCAATAGCCGCCAATCCAGAACCGAACCGAATCGAACCCAGAACC
CAGAGACCAGAGACCAGAAGCACTTGGAGTCAACCAGGAAGCCGAAAGCC
AAGAGCCAAGGGGAGCCGCAGGGGAGAGTCCGCACCAGTTCCTATGCAGC
TATATTCGAGTTTAAATGAAATTGAGCAAGAGCCTGGCAAACTGTCGCGC
CATCCGGCGCTATTTGCTCATCTTCACGGCCGTGTCCCTGCTGCTCCTGC
CCCTCTCCCTGGCCTACCTGGTGTGGAACGAGCAGCTGCAGAAGATCCGA
GGATTCGAGGCCTTTAATGTGCAGCAGCAATCGCCGCAGCAGCCGCAGCC
GCAGCAGCAACAGCAGGAGCAGCAGCAGCAGCCGCAGCAACATGGCCAGT
TTCCGTATCCGGTGGTCCGGTATCCGGTGCTGCTGCTGAACAAGAACAAG
AACAAGGACCTGACCGTCGTGGCAACGGGCAAGACCAAGAACAAGTGGCG
CTATGTTGATAAAGACAGCAACCAGACACTCCTGCCCCTCATCCCCGAGC
ATGCCGTGCAGACACTCACGCCGCAGGAAATGCTCCAGGTGGAGCAGCGG
ATGGACCAGCGCAGGGAGCGGCTAAAGGACAAGTGCTCCGCCTACGGCCT
GGATGTCCTGGGTCACGACGCGTGGCACACGCCGAACACGTGGGAATTTT
TGGTCAACAAAAAGTATCACATTATCTGGTGCAATGTCTTTAAGGCTGCC
TCATCGTCCTGGATGTTCAACTTCAACGTCCTGGCCGGTTACTCGCCCAG
CTATCTGCGCAAAACCAAGAAGATCCTTCTCAACCTGGCCAGGGAGCGCT
ATCCCAGGGTGACCCTCGACGAGCTGCGTGAGGCACAGAACTACTCGGTG
ACCTTTATCATCGCACGCGATCCCTTCGAGCGGCTGTTGAGTGCCTATCG
GGACAAGATGGTGTTCGCCCTGCCCTACTCCTTCCACGATAAGTTGGGAC
GCAGCATTGTGCGCAACTACCGCAAGAAGCCGTCACTGGCTGCCCGTGCG
GCCAACACAAAGTTCCCATCGTTTCCGGAATTCGTGCACTGGCTGCTCGA
CCAGGTGAAGCGCGGCAGCTTCATCGACATGCACTTCGTGGCGGCCACCT
CGTTCTGCACACCCTGCCTCATCCGGTTCGACATGATACTGAAGTTCGAA
TCGCTGGCGGAGGATCAATTATATCTAATCGAAAAGACTGGCCTCAAGCG
GGTGATAGCGCCCGTGTGGCGCAACATGGGCAAGGGCCGCAAGACGCACG
AGCTCCAGCAGCAGTTCTATGCGCAGCTGACACGCCAGGAAATGCTGGAG
CTCTACGAGTATTACAAATACGACTTCGAGCTGTTCGACTACGATATCCA
GGAGTATCTGCAGGTTGCCCGGCCGGATGAGGCCGAAAGTCCGGCGGGCA
CAAAGAATTAAACTAGCTCTGAATTCTTAGACTTTGCTAAAAACCAATGA
ATCAAGTTCAACGAACTCACATATTAGCCGTCACAGTACGTAATTGCAAA
TGTTGATAATACTGAAGAAAACAATAATAAAATTAGCTATATTTAAACAA
AAAAAAAAAAAA

RH40165.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:38:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG13937-RF 1806 CG13937-RF 51..1797 2..1748 8735 100 Plus
CG13937-RG 1958 CG13937-RG 240..1949 39..1748 8550 100 Plus
CG13937.b 1557 CG13937.b 468..1552 664..1748 5425 100 Plus
CG13937.b 1557 CG13937.b 47..468 39..460 2110 100 Plus
CG13937.b 1557 CG13937.b 1..43 2..44 200 97.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:30:05
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 1880690..1881111 460..39 2110 100 Minus
chr3L 24539361 chr3L 1876410..1876749 1517..1178 1700 100 Minus
chr3L 24539361 chr3L 1876113..1876347 1748..1514 1160 99.6 Minus
chr3L 24539361 chr3L 1877917..1878127 664..454 1040 99.5 Minus
chr3L 24539361 chr3L 1876853..1877010 1179..1022 790 100 Minus
chr3L 24539361 chr3L 1877452..1877601 813..664 750 100 Minus
chr3L 24539361 chr3L 1877074..1877225 1029..878 745 99.3 Minus
chr3L 24539361 chr3L 1877320..1877390 881..811 355 100 Minus
chr3L 24539361 chr3L 1882562..1882599 39..2 190 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:28:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:30:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1881128..1881549 460..39 2110 100 Minus
3L 28110227 3L 1876848..1877187 1517..1178 1700 100 Minus
3L 28110227 3L 1876551..1876785 1748..1514 1160 99.6 Minus
3L 28110227 3L 1878355..1878565 664..454 1040 99.5 Minus
3L 28110227 3L 1877291..1877448 1179..1022 790 100 Minus
3L 28110227 3L 1877890..1878039 813..664 750 100 Minus
3L 28110227 3L 1877512..1877663 1029..878 745 99.3 Minus
3L 28110227 3L 1877758..1877828 881..811 355 100 Minus
3L 28110227 3L 1883000..1883037 39..2 190 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:00:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 1881128..1881549 460..39 2110 100 Minus
3L 28103327 3L 1876848..1877187 1517..1178 1700 100 Minus
3L 28103327 3L 1876551..1876785 1748..1514 1160 99.5 Minus
3L 28103327 3L 1878355..1878565 664..454 1040 99.5 Minus
3L 28103327 3L 1877291..1877448 1179..1022 790 100 Minus
3L 28103327 3L 1877890..1878039 813..664 750 100 Minus
3L 28103327 3L 1877512..1877663 1029..878 745 99.3 Minus
3L 28103327 3L 1877758..1877828 881..811 355 100 Minus
3L 28103327 3L 1883000..1883037 39..2 190 100 Minus
Blast to na_te.dros performed on 2019-03-15 20:30:03 has no hits.

RH40165.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:30:49 Download gff for RH40165.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 1876853..1877008 1024..1179 100 <- Minus
chr3L 1877080..1877224 879..1023 100 <- Minus
chr3L 1877323..1877389 812..878 100 <- Minus
chr3L 1877454..1877601 664..811 100 <- Minus
chr3L 1877918..1878038 543..663 100 == Minus
chr3L 1876113..1876343 1518..1748 100 <- Minus
chr3L 1876410..1876747 1180..1517 100 <- Minus
chr3L 1880690..1881110 40..460 100 <- Minus
chr3L 1882562..1882599 1..39 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:46:13 Download gff for RH40165.complete
Subject Subject Range Query Range Percent Splice Strand
CG13937-RC 1..708 316..1023 100 == Plus
CG13937-RC 709..1281 1039..1611 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:30:32 Download gff for RH40165.complete
Subject Subject Range Query Range Percent Splice Strand
CG13937-RG 1..1296 316..1611 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:08:12 Download gff for RH40165.complete
Subject Subject Range Query Range Percent Splice Strand
CG13937-RF 1..1296 316..1611 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:04:04 Download gff for RH40165.complete
Subject Subject Range Query Range Percent Splice Strand
CG13937-RC 1..708 316..1023 100 == Plus
CG13937-RC 709..1281 1039..1611 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:37:27 Download gff for RH40165.complete
Subject Subject Range Query Range Percent Splice Strand
CG13937-RF 1..1296 316..1611 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:31:23 Download gff for RH40165.complete
Subject Subject Range Query Range Percent Splice Strand
CG13937-RC 1..1022 2..1023 100 == Plus
CG13937-RC 1023..1728 1039..1744 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:30:31 Download gff for RH40165.complete
Subject Subject Range Query Range Percent Splice Strand
CG13937-RF 1..1747 2..1748 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:08:12 Download gff for RH40165.complete
Subject Subject Range Query Range Percent Splice Strand
CG13937-RF 4..1751 1..1748 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:04:04 Download gff for RH40165.complete
Subject Subject Range Query Range Percent Splice Strand
CG13937-RC 1..1022 2..1023 100 == Plus
CG13937-RC 1023..1728 1039..1744 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:37:27 Download gff for RH40165.complete
Subject Subject Range Query Range Percent Splice Strand
CG13937-RF 4..1751 1..1748 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:30:49 Download gff for RH40165.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1877291..1877446 1024..1179 100 <- Minus
3L 1877518..1877662 879..1023 100 <- Minus
3L 1877761..1877827 812..878 100 <- Minus
3L 1877892..1878039 664..811 100 <- Minus
3L 1878356..1878559 460..663 100 <- Minus
3L 1876551..1876781 1518..1748 100 <- Minus
3L 1876848..1877185 1180..1517 100 <- Minus
3L 1881129..1881548 40..459 100 <- Minus
3L 1883000..1883037 1..39 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:30:49 Download gff for RH40165.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1877291..1877446 1024..1179 100 <- Minus
3L 1877518..1877662 879..1023 100 <- Minus
3L 1877761..1877827 812..878 100 <- Minus
3L 1877892..1878039 664..811 100 <- Minus
3L 1878356..1878559 460..663 100 <- Minus
3L 1876551..1876781 1518..1748 100 <- Minus
3L 1876848..1877185 1180..1517 100 <- Minus
3L 1881129..1881548 40..459 100 <- Minus
3L 1883000..1883037 1..39 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:30:49 Download gff for RH40165.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1877291..1877446 1024..1179 100 <- Minus
3L 1877518..1877662 879..1023 100 <- Minus
3L 1877761..1877827 812..878 100 <- Minus
3L 1877892..1878039 664..811 100 <- Minus
3L 1878356..1878559 460..663 100 <- Minus
3L 1876551..1876781 1518..1748 100 <- Minus
3L 1876848..1877185 1180..1517 100 <- Minus
3L 1881129..1881548 40..459 100 <- Minus
3L 1883000..1883037 1..39 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:08:12 Download gff for RH40165.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1877518..1877662 879..1023 100 <- Minus
arm_3L 1877761..1877827 812..878 100 <- Minus
arm_3L 1877892..1878039 664..811 100 <- Minus
arm_3L 1878356..1878559 460..663 100 <- Minus
arm_3L 1881129..1881548 40..459 100 <- Minus
arm_3L 1883000..1883037 1..39 97   Minus
arm_3L 1876551..1876781 1518..1748 100 <- Minus
arm_3L 1876848..1877185 1180..1517 100 <- Minus
arm_3L 1877291..1877446 1024..1179 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:42:09 Download gff for RH40165.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1877291..1877446 1024..1179 100 <- Minus
3L 1877518..1877662 879..1023 100 <- Minus
3L 1877761..1877827 812..878 100 <- Minus
3L 1877892..1878039 664..811 100 <- Minus
3L 1876551..1876781 1518..1748 100 <- Minus
3L 1876848..1877185 1180..1517 100 <- Minus
3L 1878356..1878559 460..663 100 <- Minus
3L 1881129..1881548 40..459 100 <- Minus
3L 1883000..1883037 1..39 97   Minus

RH40165.pep Sequence

Translation from 315 to 1610

> RH40165.pep
MKLSKSLANCRAIRRYLLIFTAVSLLLLPLSLAYLVWNEQLQKIRGFEAF
NVQQQSPQQPQPQQQQQEQQQQPQQHGQFPYPVVRYPVLLLNKNKNKDLT
VVATGKTKNKWRYVDKDSNQTLLPLIPEHAVQTLTPQEMLQVEQRMDQRR
ERLKDKCSAYGLDVLGHDAWHTPNTWEFLVNKKYHIIWCNVFKAASSSWM
FNFNVLAGYSPSYLRKTKKILLNLARERYPRVTLDELREAQNYSVTFIIA
RDPFERLLSAYRDKMVFALPYSFHDKLGRSIVRNYRKKPSLAARAANTKF
PSFPEFVHWLLDQVKRGSFIDMHFVAATSFCTPCLIRFDMILKFESLAED
QLYLIEKTGLKRVIAPVWRNMGKGRKTHELQQQFYAQLTRQEMLELYEYY
KYDFELFDYDIQEYLQVARPDEAESPAGTKN*

RH40165.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:58:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24951-PA 442 GF24951-PA 1..442 1..431 1964 90.3 Plus
Dana\GF15517-PA 449 GF15517-PA 121..404 141..420 461 36.3 Plus
Dana\GF14777-PA 370 GF14777-PA 196..365 247..415 200 31 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:58:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14549-PA 433 GG14549-PA 1..433 1..431 2285 98.6 Plus
Dere\GG24311-PA 443 GG24311-PA 124..419 141..429 467 36.2 Plus
Dere\GG21068-PA 561 GG21068-PA 283..556 148..415 212 26 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:58:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15296-PA 441 GH15296-PA 1..439 1..429 1692 78.6 Plus
Dgri\GH13538-PA 464 GH13538-PA 129..422 141..429 478 37.1 Plus
Dgri\GH13107-PA 327 GH13107-PA 37..322 137..415 243 26.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG13937-PG 431 CG13937-PG 1..431 1..431 2270 100 Plus
CG13937-PF 431 CG13937-PF 1..431 1..431 2270 100 Plus
CG13937-PH 426 CG13937-PH 1..426 1..431 2229 98.8 Plus
CG13937-PI 363 CG13937-PI 48..363 116..431 1669 99.7 Plus
CG13937-PE 363 CG13937-PE 48..363 116..431 1669 99.7 Plus
CG13937-PD 363 CG13937-PD 48..363 116..431 1669 99.7 Plus
CG14024-PB 444 CG14024-PB 9..406 11..420 493 32.6 Plus
CG14024-PA 444 CG14024-PA 9..406 11..420 493 32.6 Plus
CG13937-PI 363 CG13937-PI 1..81 1..75 252 67.9 Plus
CG13937-PE 363 CG13937-PE 1..81 1..75 252 67.9 Plus
CG13937-PD 363 CG13937-PD 1..81 1..75 252 67.9 Plus
CG31743-PB 329 CG31743-PB 51..324 148..415 214 26 Plus
CG31743-PA 329 CG31743-PA 51..324 148..415 214 26 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:58:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12007-PA 432 GI12007-PA 1..422 1..421 1660 77.8 Plus
Dmoj\GI10575-PA 438 GI10575-PA 118..393 141..414 494 37.8 Plus
Dmoj\GI22530-PA 329 GI22530-PA 38..324 137..415 226 26.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:58:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24817-PA 425 GL24817-PA 1..425 1..431 1798 85.8 Plus
Dper\GL18559-PA 501 GL18559-PA 122..404 142..420 462 36.9 Plus
Dper\GL14199-PA 329 GL14199-PA 42..324 140..415 217 24.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:59:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12641-PA 437 GA12641-PA 1..437 1..431 1907 90.6 Plus
Dpse\GA12707-PA 447 GA12707-PA 122..404 142..420 453 36.5 Plus
Dpse\GA16441-PA 329 GA16441-PA 42..324 140..415 217 24.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:59:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14158-PA 430 GM14158-PA 1..430 1..431 2282 99.1 Plus
Dsec\GM18029-PA 443 GM18029-PA 122..405 141..420 471 37.3 Plus
Dsec\GM17218-PA 329 GM17218-PA 42..324 140..415 216 26.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:59:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13428-PA 333 GD13428-PA 114..333 212..431 1179 99.5 Plus
Dsim\GD13428-PA 333 GD13428-PA 1..115 1..111 537 93.9 Plus
Dsim\GD22657-PA 443 GD22657-PA 122..405 141..420 471 37.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:59:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13277-PA 428 GJ13277-PA 1..428 1..429 1696 79.7 Plus
Dvir\GJ21781-PA 427 GJ21781-PA 70..386 106..414 497 36.7 Plus
Dvir\GJ23046-PA 327 GJ23046-PA 40..322 140..415 224 26.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:59:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19720-PA 419 GK19720-PA 1..419 1..431 1898 88 Plus
Dwil\GK24847-PA 446 GK24847-PA 126..406 142..420 459 37 Plus
Dwil\GK18242-PA 333 GK18242-PA 24..328 121..415 211 23.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:59:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20904-PA 433 GE20904-PA 1..433 1..431 2273 97.9 Plus
Dyak\GE22857-PA 203 GE22857-PA 14..203 189..431 865 73.3 Plus
Dyak\GE22861-PA 211 GE22861-PA 76..211 289..431 664 87.4 Plus
Dyak\GE19005-PA 442 GE19005-PA 123..418 141..429 471 36.5 Plus
Dyak\GE12777-PA 329 GE12777-PA 42..324 140..415 211 25.9 Plus

RH40165.hyp Sequence

Translation from 315 to 1610

> RH40165.hyp
MKLSKSLANCRAIRRYLLIFTAVSLLLLPLSLAYLVWNEQLQKIRGFEAF
NVQQQSPQQPQPQQQQQEQQQQPQQHGQFPYPVVRYPVLLLNKNKNKDLT
VVATGKTKNKWRYVDKDSNQTLLPLIPEHAVQTLTPQEMLQVEQRMDQRR
ERLKDKCSAYGLDVLGHDAWHTPNTWEFLVNKKYHIIWCNVFKAASSSWM
FNFNVLAGYSPSYLRKTKKILLNLARERYPRVTLDELREAQNYSVTFIIA
RDPFERLLSAYRDKMVFALPYSFHDKLGRSIVRNYRKKPSLAARAANTKF
PSFPEFVHWLLDQVKRGSFIDMHFVAATSFCTPCLIRFDMILKFESLAED
QLYLIEKTGLKRVIAPVWRNMGKGRKTHELQQQFYAQLTRQEMLELYEYY
KYDFELFDYDIQEYLQVARPDEAESPAGTKN*

RH40165.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:06:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG13937-PG 431 CG13937-PG 1..431 1..431 2270 100 Plus
CG13937-PF 431 CG13937-PF 1..431 1..431 2270 100 Plus
CG13937-PH 426 CG13937-PH 1..426 1..431 2229 98.8 Plus
CG13937-PI 363 CG13937-PI 48..363 116..431 1669 99.7 Plus
CG13937-PE 363 CG13937-PE 48..363 116..431 1669 99.7 Plus
CG13937-PI 363 CG13937-PI 1..81 1..75 252 67.9 Plus