BDGP Sequence Production Resources |
Search the DGRC for RH40237
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 402 |
Well: | 37 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Trs23-RA |
Protein status: | RH40237.pep: gold |
Preliminary Size: | 660 |
Sequenced Size: | 730 |
Gene | Date | Evidence |
---|---|---|
CG9298 | 2002-01-01 | Sim4 clustering to Release 2 |
CG9298 | 2003-01-01 | Sim4 clustering to Release 3 |
CG9298 | 2008-04-29 | Stopped prior to 5.5 |
730 bp assembled on 2010-02-03
GenBank Submission: BT120293.1
> RH40237.complete GACTCCTAGGAAACTTAGAATTAGTAATAGTAAGAAATGATTATATATGG CGTCTATATAGTTAGTAAATCGGGTGGCCTTATATTCAACCTGGACAACA ATGTGCCACGCATTGAGCACGAGAAGACCTTTACATACCCTCTGGACTTG GTGCTGGACTACGATTCCAAGAAGGTATCGGTCTCGTTCAACAGAAAGGA TGGAATAAATGTGGGCCATGTCCTGGTGGCGGTCAACGGTATGCCCGTCA ATGGAGTCACCCTGGATGATGGACGCGATGTGAGGACGACACTGGATGCA CCGGAGAACTATCCCATTAACCTGAAGTTCAGCCGGCCAAAGATGACCAC CAACGAGAAAATCTTTCTGGCCAGCATGTTCTACCCGCTGTTCGCCATCG CCAGCCAACTGAGTCCGGAGCCCAAGAGTTCCGGCATCGAGATCCTAGAG GCGGACACTTTCACGCTGCACTGCTTCCAAACGCTGACCGGAATCAAGTT CATTATAATCTCGGAAACGGGTCTCAATGGCATTGATCTGCTGCTGCGAA AGGTTTACGAGCTGTACTCAGACTACGTGCTCAAGAACCCCTTCTACTCC CTGGAGATGCCCATTCGATGCGAGCTCTTCGACAACAAGCTCCAAGAGCT CCTCGCCCAGGTCGAGAAGACGGGCATTAGCAATATCGATAAATAAACGT TAGTTAGTCTTTGTAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Trs23-RA | 903 | Trs23-RA | 76..788 | 4..716 | 3565 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 8685159..8685369 | 1..211 | 97 | -> | Plus |
chr2L | 8685427..8685929 | 212..714 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9298-RA | 1..660 | 37..696 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trs23-RA | 1..660 | 37..696 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trs23-RA | 1..660 | 37..696 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trs23-RA | 1..660 | 37..696 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9298-RA | 52..765 | 1..714 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trs23-RA | 52..765 | 1..714 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trs23-RA | 52..765 | 1..714 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trs23-RA | 52..765 | 1..714 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8686282..8686492 | 1..211 | 99 | -> | Plus |
2L | 8686550..8687052 | 212..714 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8686282..8686492 | 1..211 | 99 | -> | Plus |
2L | 8686550..8687052 | 212..714 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8686282..8686492 | 1..211 | 99 | -> | Plus |
2L | 8686550..8687052 | 212..714 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 8686282..8686492 | 1..211 | 99 | -> | Plus |
arm_2L | 8686550..8687052 | 212..714 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8686282..8686492 | 1..211 | 99 | -> | Plus |
2L | 8686550..8687052 | 212..714 | 100 | Plus |
Translation from 36 to 695
> RH40237.hyp MIIYGVYIVSKSGGLIFNLDNNVPRIEHEKTFTYPLDLVLDYDSKKVSVS FNRKDGINVGHVLVAVNGMPVNGVTLDDGRDVRTTLDAPENYPINLKFSR PKMTTNEKIFLASMFYPLFAIASQLSPEPKSSGIEILEADTFTLHCFQTL TGIKFIIISETGLNGIDLLLRKVYELYSDYVLKNPFYSLEMPIRCELFDN KLQELLAQVEKTGISNIDK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Trs23-PA | 219 | CG9298-PA | 1..219 | 1..219 | 1124 | 100 | Plus |
Translation from 36 to 695
> RH40237.pep MIIYGVYIVSKSGGLIFNLDNNVPRIEHEKTFTYPLDLVLDYDSKKVSVS FNRKDGINVGHVLVAVNGMPVNGVTLDDGRDVRTTLDAPENYPINLKFSR PKMTTNEKIFLASMFYPLFAIASQLSPEPKSSGIEILEADTFTLHCFQTL TGIKFIIISETGLNGIDLLLRKVYELYSDYVLKNPFYSLEMPIRCELFDN KLQELLAQVEKTGISNIDK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF15539-PA | 219 | GF15539-PA | 1..219 | 1..219 | 1101 | 94.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG25299-PA | 219 | GG25299-PA | 1..219 | 1..219 | 1131 | 98.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11277-PA | 219 | GH11277-PA | 1..219 | 1..219 | 1069 | 91.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Trs23-PA | 219 | CG9298-PA | 1..219 | 1..219 | 1124 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17696-PA | 219 | GI17696-PA | 1..219 | 1..219 | 1065 | 90.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25559-PA | 197 | GL25559-PA | 1..193 | 1..193 | 957 | 93.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21680-PA | 219 | GA21680-PA | 1..219 | 1..219 | 1107 | 95.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17108-PA | 219 | GM17108-PA | 1..219 | 1..219 | 1140 | 99.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23559-PA | 219 | GD23559-PA | 1..219 | 1..219 | 1140 | 99.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11301-PA | 219 | GJ11301-PA | 1..219 | 1..219 | 1094 | 93.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK18753-PA | 219 | GK18753-PA | 1..219 | 1..219 | 1079 | 91.8 | Plus |
Dwil\GK14119-PA | 145 | GK14119-PA | 41..145 | 114..217 | 156 | 29.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE18790-PA | 219 | GE18790-PA | 1..219 | 1..219 | 1138 | 98.6 | Plus |