Clone RH40246 Report

Search the DGRC for RH40246

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:402
Well:46
Vector:pFlc-1
Associated Gene/TranscriptCG5612-RA
Protein status:RH40246.pep: gold
Preliminary Size:1352
Sequenced Size:1525

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5612 2002-01-01 Sim4 clustering to Release 2
CG5612 2002-02-22 Blastp of sequenced clone
CG5612 2003-01-01 Sim4 clustering to Release 3
CG5612 2008-04-29 Release 5.5 accounting
CG5612 2008-08-15 Release 5.9 accounting
CG5612 2008-12-18 5.12 accounting

Clone Sequence Records

RH40246.complete Sequence

1525 bp (1525 high quality bases) assembled on 2002-02-22

GenBank Submission: AY089668

> RH40246.complete
GAGTTGCCAAAGTTCTTTTGCGCCGTGCGATCGAAGATCTCTCTCGTGCG
GATACATCGGAAAATGATCCACATTTTCTAACTACCGAATTCGAAAATGG
CATTTAACATGTGTGCAAATTCGCTTTGCTTGGGCCTAGTTGCCCTTCTG
GTTTTGGCCAAAAGTAGCGACGCCTTGCAGGCAAAACGTTTCTTCGGTGT
GGGCGAAAGGGTGGAAGGGGACCAGCTCCTGGTCAAGGATGTGCTCCATT
CCCGTCCAGCCGGCGCCGGCGAGCTGCCCGGAGTGACGTTCACCTACGAG
ATTTTGGAGCCAATCACTTGCGTGGAAATTCTATCGGAGGAAAACATTTC
GGCGGAGGTGAAATTCAGCTTGGTGAATCGCCTCATCGTGGGCATAATCC
AATTGGCTGCCAGCAATCAAAGCGTTAACCCATCAGCTCCCATTGTTCCA
CCAACCGTCGAGTTCGATGTGACCATCATGGTGTTTGGCCTAAATGAGAC
CTCCAAGCATTTCGATCCCTCACTGGTCATCAATCGTGATCAGCAATTTG
AGGGCGAGATGGAGCCCTACGAGGAAATCTTCCCGGAACCGGATCAATAT
GTTGAGGTATTTGACAACAATAGACGCGATGACCTGGAGATCGACGAAGG
TGATGACAATCTGTCCGAGGAGGACATCGAGAGCTATACGGAAGGTCCAT
TCGTAACAGACTATTTCGATAAGCCAGACAAATACATTGAAGTTGGAAAA
AGGCAGGCGGGCGATGAACTTCTCTATGATTGCTATCAGACATCGCCGGA
TGATTCGGAAAAGCCAACCAATCACTCGGTGGTTTTCTACTACATCGACA
ATAATCTAATAACATACGTGCGGTTTGCTATACTCGATCACTATGCCAAT
AGAAATATCTCGGAGGCCGAATACCAAGCGCCGGTGGCAGAGTACAGTCA
CTATACGAGTGGCACCCTAAAGGCGGTCATCACCGACTACGATTCGAAAA
GCCTTTTTGTCCAGATGTACGTCTACGGATATCGGGGGCGCACAGCGCCG
CCCACCTATGAGCCCTTCCTGCCGCCGCCGCTGTGGCAAAAGGCAATTCT
GGAGTCGCGGACCAAAAGCAATGCCACTCCGCACCTGACGCCGCTGCAGA
CGCTGCAGCTGCTCCTGCTGACCGGCCAGCGGACCACCCCGCCGCCAGGA
GTGTACAATGATAGCGTGGAGCACGAGGAGCAGCGGAGCATTCGGCCGGA
GGAGATGATGTTCGAGCGGATCGAGGATGAGAGTGAGGGTGAGAGTGAGA
AGAATTCGGCACTGCGCCAGATGAACCAGGGCATGGGAATGGCGGCGCTG
CTGGGCCTGCTCTTCCTGATCCTGCATAACTAGGTAGCCCGCCAGGGGGG
GGAATCATTAGTTAATCCATGGAAAGCTTTATGAGTAGTCTTTAGTCCAA
CATTCTGTCTATTGTATTTTACGAAATAAACTTTTGGCCTAAGCCAAGGC
ACACACAAAAAAAAAAAAAAAAAAA

RH40246.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:24:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG5612.a 2031 CG5612.a 57..1562 2..1507 7530 100 Plus
CG5612-RA 1762 CG5612-RA 64..1569 2..1507 7530 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:43:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 23446265..23446882 1506..889 3090 100 Minus
chr3R 27901430 chr3R 23447136..23447554 761..343 2095 100 Minus
chr3R 27901430 chr3R 23448573..23448913 342..2 1675 99.4 Minus
chr3R 27901430 chr3R 23446952..23447080 888..760 645 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:28:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:43:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27623358..27623976 1507..889 3095 100 Minus
3R 32079331 3R 27624230..27624648 761..343 2095 100 Minus
3R 32079331 3R 27625669..27626009 342..2 1705 100 Minus
3R 32079331 3R 27624046..27624174 888..760 645 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:53:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 27364189..27364807 1507..889 3095 100 Minus
3R 31820162 3R 27365061..27365479 761..343 2095 100 Minus
3R 31820162 3R 27366500..27366840 342..2 1705 100 Minus
3R 31820162 3R 27364877..27365005 888..760 645 100 Minus
Blast to na_te.dros performed 2019-03-15 16:43:28
Subject Length Description Subject Range Query Range Score Percent Strand
R2-element 3607 R2-element DMRER2DM 3607bp Derived from X51967 (g8432) (Rel. 24, Last updated, Version 1). 279..331 544..601 116 72.4 Plus

RH40246.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:44:34 Download gff for RH40246.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 23447137..23447554 343..760 100 <- Minus
chr3R 23448573..23448913 1..342 99   Minus
chr3R 23446265..23446882 889..1506 100 <- Minus
chr3R 23446952..23447079 761..888 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:46:15 Download gff for RH40246.complete
Subject Subject Range Query Range Percent Splice Strand
CG5612-RA 1..1287 97..1383 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:36:53 Download gff for RH40246.complete
Subject Subject Range Query Range Percent Splice Strand
CG5612-RA 1..1287 97..1383 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:08:49 Download gff for RH40246.complete
Subject Subject Range Query Range Percent Splice Strand
CG5612-RA 1..1287 97..1383 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:07:59 Download gff for RH40246.complete
Subject Subject Range Query Range Percent Splice Strand
CG5612-RA 1..1287 97..1383 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:47:43 Download gff for RH40246.complete
Subject Subject Range Query Range Percent Splice Strand
CG5612-RA 1..1287 97..1383 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:02:15 Download gff for RH40246.complete
Subject Subject Range Query Range Percent Splice Strand
CG5612-RA 1..1505 2..1506 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:36:53 Download gff for RH40246.complete
Subject Subject Range Query Range Percent Splice Strand
CG5612-RA 1..1505 2..1506 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:08:49 Download gff for RH40246.complete
Subject Subject Range Query Range Percent Splice Strand
CG5612-RA 2..1507 1..1506 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:08:00 Download gff for RH40246.complete
Subject Subject Range Query Range Percent Splice Strand
CG5612-RA 1..1505 2..1506 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:47:43 Download gff for RH40246.complete
Subject Subject Range Query Range Percent Splice Strand
CG5612-RA 2..1507 1..1506 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:44:34 Download gff for RH40246.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27623359..27623976 889..1506 100 <- Minus
3R 27624046..27624173 761..888 100 <- Minus
3R 27624231..27624648 343..760 100 <- Minus
3R 27625669..27626009 1..342 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:44:34 Download gff for RH40246.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27623359..27623976 889..1506 100 <- Minus
3R 27624046..27624173 761..888 100 <- Minus
3R 27624231..27624648 343..760 100 <- Minus
3R 27625669..27626009 1..342 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:44:34 Download gff for RH40246.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27623359..27623976 889..1506 100 <- Minus
3R 27624046..27624173 761..888 100 <- Minus
3R 27624231..27624648 343..760 100 <- Minus
3R 27625669..27626009 1..342 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:08:49 Download gff for RH40246.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23449768..23449895 761..888 100 <- Minus
arm_3R 23449081..23449698 889..1506 100 <- Minus
arm_3R 23449953..23450370 343..760 100 <- Minus
arm_3R 23451391..23451731 1..342 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:42:00 Download gff for RH40246.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27364190..27364807 889..1506 100 <- Minus
3R 27364877..27365004 761..888 100 <- Minus
3R 27365062..27365479 343..760 100 <- Minus
3R 27366500..27366840 1..342 99   Minus

RH40246.pep Sequence

Translation from 96 to 1382

> RH40246.pep
MAFNMCANSLCLGLVALLVLAKSSDALQAKRFFGVGERVEGDQLLVKDVL
HSRPAGAGELPGVTFTYEILEPITCVEILSEENISAEVKFSLVNRLIVGI
IQLAASNQSVNPSAPIVPPTVEFDVTIMVFGLNETSKHFDPSLVINRDQQ
FEGEMEPYEEIFPEPDQYVEVFDNNRRDDLEIDEGDDNLSEEDIESYTEG
PFVTDYFDKPDKYIEVGKRQAGDELLYDCYQTSPDDSEKPTNHSVVFYYI
DNNLITYVRFAILDHYANRNISEAEYQAPVAEYSHYTSGTLKAVITDYDS
KSLFVQMYVYGYRGRTAPPTYEPFLPPPLWQKAILESRTKSNATPHLTPL
QTLQLLLLTGQRTTPPPGVYNDSVEHEEQRSIRPEEMMFERIEDESEGES
EKNSALRQMNQGMGMAALLGLLFLILHN*

RH40246.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:49:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18701-PA 423 GF18701-PA 10..408 14..411 961 53.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:49:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12105-PA 424 GG12105-PA 1..424 5..428 1767 86 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:49:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21660-PA 407 GH21660-PA 3..350 6..366 802 46.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:22:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG5612-PA 428 CG5612-PA 1..428 1..428 2224 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:49:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10750-PA 404 GI10750-PA 5..401 14..424 774 41 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:49:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13774-PA 423 GL13774-PA 1..406 5..412 947 49.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:49:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19006-PA 429 GA19006-PA 1..411 5..412 998 51.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:49:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16335-PA 428 GM16335-PA 1..428 1..428 2206 96.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:49:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18070-PA 428 GD18070-PA 1..428 1..428 2197 96.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:49:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10691-PA 411 GJ10691-PA 1..408 6..424 846 44.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:49:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11327-PA 420 GK11327-PA 1..417 5..428 923 47 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:49:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10553-PA 428 GE10553-PA 1..428 5..428 1790 86 Plus

RH40246.hyp Sequence

Translation from 96 to 1382

> RH40246.hyp
MAFNMCANSLCLGLVALLVLAKSSDALQAKRFFGVGERVEGDQLLVKDVL
HSRPAGAGELPGVTFTYEILEPITCVEILSEENISAEVKFSLVNRLIVGI
IQLAASNQSVNPSAPIVPPTVEFDVTIMVFGLNETSKHFDPSLVINRDQQ
FEGEMEPYEEIFPEPDQYVEVFDNNRRDDLEIDEGDDNLSEEDIESYTEG
PFVTDYFDKPDKYIEVGKRQAGDELLYDCYQTSPDDSEKPTNHSVVFYYI
DNNLITYVRFAILDHYANRNISEAEYQAPVAEYSHYTSGTLKAVITDYDS
KSLFVQMYVYGYRGRTAPPTYEPFLPPPLWQKAILESRTKSNATPHLTPL
QTLQLLLLTGQRTTPPPGVYNDSVEHEEQRSIRPEEMMFERIEDESEGES
EKNSALRQMNQGMGMAALLGLLFLILHN*

RH40246.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:49:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG5612-PA 428 CG5612-PA 1..428 1..428 2224 100 Plus