BDGP Sequence Production Resources |
Search the DGRC for RH40246
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 402 |
Well: | 46 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG5612-RA |
Protein status: | RH40246.pep: gold |
Preliminary Size: | 1352 |
Sequenced Size: | 1525 |
Gene | Date | Evidence |
---|---|---|
CG5612 | 2002-01-01 | Sim4 clustering to Release 2 |
CG5612 | 2002-02-22 | Blastp of sequenced clone |
CG5612 | 2003-01-01 | Sim4 clustering to Release 3 |
CG5612 | 2008-04-29 | Release 5.5 accounting |
CG5612 | 2008-08-15 | Release 5.9 accounting |
CG5612 | 2008-12-18 | 5.12 accounting |
1525 bp (1525 high quality bases) assembled on 2002-02-22
GenBank Submission: AY089668
> RH40246.complete GAGTTGCCAAAGTTCTTTTGCGCCGTGCGATCGAAGATCTCTCTCGTGCG GATACATCGGAAAATGATCCACATTTTCTAACTACCGAATTCGAAAATGG CATTTAACATGTGTGCAAATTCGCTTTGCTTGGGCCTAGTTGCCCTTCTG GTTTTGGCCAAAAGTAGCGACGCCTTGCAGGCAAAACGTTTCTTCGGTGT GGGCGAAAGGGTGGAAGGGGACCAGCTCCTGGTCAAGGATGTGCTCCATT CCCGTCCAGCCGGCGCCGGCGAGCTGCCCGGAGTGACGTTCACCTACGAG ATTTTGGAGCCAATCACTTGCGTGGAAATTCTATCGGAGGAAAACATTTC GGCGGAGGTGAAATTCAGCTTGGTGAATCGCCTCATCGTGGGCATAATCC AATTGGCTGCCAGCAATCAAAGCGTTAACCCATCAGCTCCCATTGTTCCA CCAACCGTCGAGTTCGATGTGACCATCATGGTGTTTGGCCTAAATGAGAC CTCCAAGCATTTCGATCCCTCACTGGTCATCAATCGTGATCAGCAATTTG AGGGCGAGATGGAGCCCTACGAGGAAATCTTCCCGGAACCGGATCAATAT GTTGAGGTATTTGACAACAATAGACGCGATGACCTGGAGATCGACGAAGG TGATGACAATCTGTCCGAGGAGGACATCGAGAGCTATACGGAAGGTCCAT TCGTAACAGACTATTTCGATAAGCCAGACAAATACATTGAAGTTGGAAAA AGGCAGGCGGGCGATGAACTTCTCTATGATTGCTATCAGACATCGCCGGA TGATTCGGAAAAGCCAACCAATCACTCGGTGGTTTTCTACTACATCGACA ATAATCTAATAACATACGTGCGGTTTGCTATACTCGATCACTATGCCAAT AGAAATATCTCGGAGGCCGAATACCAAGCGCCGGTGGCAGAGTACAGTCA CTATACGAGTGGCACCCTAAAGGCGGTCATCACCGACTACGATTCGAAAA GCCTTTTTGTCCAGATGTACGTCTACGGATATCGGGGGCGCACAGCGCCG CCCACCTATGAGCCCTTCCTGCCGCCGCCGCTGTGGCAAAAGGCAATTCT GGAGTCGCGGACCAAAAGCAATGCCACTCCGCACCTGACGCCGCTGCAGA CGCTGCAGCTGCTCCTGCTGACCGGCCAGCGGACCACCCCGCCGCCAGGA GTGTACAATGATAGCGTGGAGCACGAGGAGCAGCGGAGCATTCGGCCGGA GGAGATGATGTTCGAGCGGATCGAGGATGAGAGTGAGGGTGAGAGTGAGA AGAATTCGGCACTGCGCCAGATGAACCAGGGCATGGGAATGGCGGCGCTG CTGGGCCTGCTCTTCCTGATCCTGCATAACTAGGTAGCCCGCCAGGGGGG GGAATCATTAGTTAATCCATGGAAAGCTTTATGAGTAGTCTTTAGTCCAA CATTCTGTCTATTGTATTTTACGAAATAAACTTTTGGCCTAAGCCAAGGC ACACACAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 23446265..23446882 | 1506..889 | 3090 | 100 | Minus |
chr3R | 27901430 | chr3R | 23447136..23447554 | 761..343 | 2095 | 100 | Minus |
chr3R | 27901430 | chr3R | 23448573..23448913 | 342..2 | 1675 | 99.4 | Minus |
chr3R | 27901430 | chr3R | 23446952..23447080 | 888..760 | 645 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 27623358..27623976 | 1507..889 | 3095 | 100 | Minus |
3R | 32079331 | 3R | 27624230..27624648 | 761..343 | 2095 | 100 | Minus |
3R | 32079331 | 3R | 27625669..27626009 | 342..2 | 1705 | 100 | Minus |
3R | 32079331 | 3R | 27624046..27624174 | 888..760 | 645 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 27364189..27364807 | 1507..889 | 3095 | 100 | Minus |
3R | 31820162 | 3R | 27365061..27365479 | 761..343 | 2095 | 100 | Minus |
3R | 31820162 | 3R | 27366500..27366840 | 342..2 | 1705 | 100 | Minus |
3R | 31820162 | 3R | 27364877..27365005 | 888..760 | 645 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
R2-element | 3607 | R2-element DMRER2DM 3607bp Derived from X51967 (g8432) (Rel. 24, Last updated, Version 1). | 279..331 | 544..601 | 116 | 72.4 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 23447137..23447554 | 343..760 | 100 | <- | Minus |
chr3R | 23448573..23448913 | 1..342 | 99 | Minus | |
chr3R | 23446265..23446882 | 889..1506 | 100 | <- | Minus |
chr3R | 23446952..23447079 | 761..888 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5612-RA | 1..1287 | 97..1383 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5612-RA | 1..1287 | 97..1383 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5612-RA | 1..1287 | 97..1383 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5612-RA | 1..1287 | 97..1383 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5612-RA | 1..1287 | 97..1383 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5612-RA | 1..1505 | 2..1506 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5612-RA | 1..1505 | 2..1506 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5612-RA | 2..1507 | 1..1506 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5612-RA | 1..1505 | 2..1506 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5612-RA | 2..1507 | 1..1506 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 27623359..27623976 | 889..1506 | 100 | <- | Minus |
3R | 27624046..27624173 | 761..888 | 100 | <- | Minus |
3R | 27624231..27624648 | 343..760 | 100 | <- | Minus |
3R | 27625669..27626009 | 1..342 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 27623359..27623976 | 889..1506 | 100 | <- | Minus |
3R | 27624046..27624173 | 761..888 | 100 | <- | Minus |
3R | 27624231..27624648 | 343..760 | 100 | <- | Minus |
3R | 27625669..27626009 | 1..342 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 27623359..27623976 | 889..1506 | 100 | <- | Minus |
3R | 27624046..27624173 | 761..888 | 100 | <- | Minus |
3R | 27624231..27624648 | 343..760 | 100 | <- | Minus |
3R | 27625669..27626009 | 1..342 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 23449768..23449895 | 761..888 | 100 | <- | Minus |
arm_3R | 23449081..23449698 | 889..1506 | 100 | <- | Minus |
arm_3R | 23449953..23450370 | 343..760 | 100 | <- | Minus |
arm_3R | 23451391..23451731 | 1..342 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 27364190..27364807 | 889..1506 | 100 | <- | Minus |
3R | 27364877..27365004 | 761..888 | 100 | <- | Minus |
3R | 27365062..27365479 | 343..760 | 100 | <- | Minus |
3R | 27366500..27366840 | 1..342 | 99 | Minus |
Translation from 96 to 1382
> RH40246.pep MAFNMCANSLCLGLVALLVLAKSSDALQAKRFFGVGERVEGDQLLVKDVL HSRPAGAGELPGVTFTYEILEPITCVEILSEENISAEVKFSLVNRLIVGI IQLAASNQSVNPSAPIVPPTVEFDVTIMVFGLNETSKHFDPSLVINRDQQ FEGEMEPYEEIFPEPDQYVEVFDNNRRDDLEIDEGDDNLSEEDIESYTEG PFVTDYFDKPDKYIEVGKRQAGDELLYDCYQTSPDDSEKPTNHSVVFYYI DNNLITYVRFAILDHYANRNISEAEYQAPVAEYSHYTSGTLKAVITDYDS KSLFVQMYVYGYRGRTAPPTYEPFLPPPLWQKAILESRTKSNATPHLTPL QTLQLLLLTGQRTTPPPGVYNDSVEHEEQRSIRPEEMMFERIEDESEGES EKNSALRQMNQGMGMAALLGLLFLILHN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18701-PA | 423 | GF18701-PA | 10..408 | 14..411 | 961 | 53.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12105-PA | 424 | GG12105-PA | 1..424 | 5..428 | 1767 | 86 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21660-PA | 407 | GH21660-PA | 3..350 | 6..366 | 802 | 46.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5612-PA | 428 | CG5612-PA | 1..428 | 1..428 | 2224 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10750-PA | 404 | GI10750-PA | 5..401 | 14..424 | 774 | 41 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13774-PA | 423 | GL13774-PA | 1..406 | 5..412 | 947 | 49.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19006-PA | 429 | GA19006-PA | 1..411 | 5..412 | 998 | 51.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM16335-PA | 428 | GM16335-PA | 1..428 | 1..428 | 2206 | 96.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18070-PA | 428 | GD18070-PA | 1..428 | 1..428 | 2197 | 96.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10691-PA | 411 | GJ10691-PA | 1..408 | 6..424 | 846 | 44.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11327-PA | 420 | GK11327-PA | 1..417 | 5..428 | 923 | 47 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10553-PA | 428 | GE10553-PA | 1..428 | 5..428 | 1790 | 86 | Plus |
Translation from 96 to 1382
> RH40246.hyp MAFNMCANSLCLGLVALLVLAKSSDALQAKRFFGVGERVEGDQLLVKDVL HSRPAGAGELPGVTFTYEILEPITCVEILSEENISAEVKFSLVNRLIVGI IQLAASNQSVNPSAPIVPPTVEFDVTIMVFGLNETSKHFDPSLVINRDQQ FEGEMEPYEEIFPEPDQYVEVFDNNRRDDLEIDEGDDNLSEEDIESYTEG PFVTDYFDKPDKYIEVGKRQAGDELLYDCYQTSPDDSEKPTNHSVVFYYI DNNLITYVRFAILDHYANRNISEAEYQAPVAEYSHYTSGTLKAVITDYDS KSLFVQMYVYGYRGRTAPPTYEPFLPPPLWQKAILESRTKSNATPHLTPL QTLQLLLLTGQRTTPPPGVYNDSVEHEEQRSIRPEEMMFERIEDESEGES EKNSALRQMNQGMGMAALLGLLFLILHN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5612-PA | 428 | CG5612-PA | 1..428 | 1..428 | 2224 | 100 | Plus |