Clone RH40632 Report

Search the DGRC for RH40632

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:406
Well:32
Vector:pFlc-1
Associated Gene/TranscriptCG32647-RA
Protein status:RH40632.pep: gold
Sequenced Size:1232

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15723 2002-01-01 Sim4 clustering to Release 2
CG32647 2002-05-30 Blastp of sequenced clone
CG32647 2003-01-01 Sim4 clustering to Release 3
CG32647 2008-04-29 Release 5.5 accounting
CG32647 2008-08-15 Release 5.9 accounting
CG32647 2008-12-18 5.12 accounting

Clone Sequence Records

RH40632.complete Sequence

1232 bp (1232 high quality bases) assembled on 2002-05-30

GenBank Submission: AY118433

> RH40632.complete
GAGTTGGCTCTTGACTCTCCCACGCTGCAGTCGGTGGCTCTGGCCGGAAT
CAGAACCGGAATCGGAATCGGTATCGGAATCGCAATCCGAATCGGAATCG
GAATCGGAATCTTGCCCGGATTGCATAGAGCGTACTGGGAGTGAGAGAGT
GGTTCGTCACACTTGCAGTTGCAGTTGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCGTAGTGGCAGCAGCAAAAATCAACAAAATCAACAAAAGGCAACAC
AAAAGACGAGTGCAAGGACAGGCCAAGAAGAAGCAGCAGTACAAAAAGGA
TAATTGCAACAGCAAACATAAGAAGTAAGCCAGGCAACTGCAACAGCAAC
ATTTGCTGCAAGTGCAGCTCCCACAGCCATCGCCGCCGCCAAGTTCAAAA
TCAACGCCTGACAATGACAAAGGCAGCAGCAGCAGCAGCAACAGCAACAG
CAACAACAACAGCGGCAGCAACACCAATCAAAACAGCAGCAGCAACCAAA
GCAATAACAATCAATGGGCCCCAAACGACATGGCGACGTCAACGAGGCTG
CTGCACAACAACAACAACAGCAGCAATACGAAACATGCAGCAGCAAAAGC
AAAAGCAACAGCAACAATCGTACTTGCAACGCCTTAAGGCGGCCGGTCGA
CTGGGGGCGTGGCCGCCACCAATGACGTCGTTGCTTTGGCTGCCAACTGA
CTATCTCGCCCAGCTGATTTTGGCCCTATGCCTGCTGGGCTGCCTCAGCC
CCTTTACAGCTGCACTCGAGGAGGACTGTGTTGACTTTCAGGGCAACAAG
GTGAACCACGGAATGCTCTATGTGCCTGGACCAGGAGTCTGTAGCCTTTG
CGTCTGCTATCACTCCGAACCACTCTGGTGCAAGGCCATCTACTGTGATC
CACCCTATTTTTGCAAAAACTTTCGAGTTGGCGAACGTTGCTGTGAGTTC
GAGTGCTTGGATCCGCCCGGCGAGGACAAACTGTACCAGGAACGCATGCG
AAAGAGGGCCGAGATACTGGCCGGCAACAGTACGGCCTCGAATGTGCAAC
TCGCCCCGATTGCCATGTCCACCATAATGCTGGGATTCCTGGGCAATAGC
TTCCTGAACTTATAACTTGAAGTCAAATAGCAAGAGATGGAGATCAACTT
AAGGCGAAGCTAAATCACAATATCCTCATTTTTTGTTGCTCCTAAAGCGT
AGGACACTCTCTACCCAAAAAAAAAAAAAAAA

RH40632.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG32647.h 2004 CG32647.h 1..1230 2..1231 6150 100 Plus
CG32647.a 1728 CG32647.a 1..1230 2..1231 6150 100 Plus
CG32647.c 2733 CG32647.c 1..1230 2..1231 6150 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:10:53
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 12673961..12674462 759..258 2510 100 Minus
chrX 22417052 chrX 12675576..12675832 258..2 1255 99.2 Minus
chrX 22417052 chrX 12667452..12667680 1216..988 1145 100 Minus
chrX 22417052 chrX 12667957..12668109 908..756 765 100 Minus
chrX 22417052 chrX 12667744..12667829 994..909 415 98.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:28:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:10:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12783089..12783590 759..258 2510 100 Minus
X 23542271 X 12784702..12784958 258..2 1285 100 Minus
X 23542271 X 12776557..12776800 1231..988 1220 100 Minus
X 23542271 X 12777077..12777229 908..756 765 100 Minus
X 23542271 X 12776864..12776949 994..909 415 98.8 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:29:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 12791187..12791688 759..258 2510 100 Minus
X 23527363 X 12792800..12793056 258..2 1285 100 Minus
X 23527363 X 12784655..12784898 1231..988 1220 100 Minus
X 23527363 X 12785175..12785327 908..756 765 100 Minus
X 23527363 X 12784962..12785047 994..909 415 98.8 Minus
Blast to na_te.dros performed 2019-03-16 00:10:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2302..2671 276..622 409 62.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..7220 172..629 408 59.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..7070 303..645 342 61.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2438..2874 171..615 291 57.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6714..6954 231..479 235 58.6 Plus
rover 7318 rover ROVER 7318bp 5419..5506 220..309 129 64.8 Plus

RH40632.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:11:44 Download gff for RH40632.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 12673961..12674102 618..759 100 == Minus
chrX 12674166..12674209 511..554 100 == Minus
chrX 12667957..12668105 760..908 100 <- Minus
chrX 12674298..12674461 259..422 100 <- Minus
chrX 12667452..12667678 990..1216 100 <- Minus
chrX 12667749..12667829 909..989 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:46:21 Download gff for RH40632.complete
Subject Subject Range Query Range Percent Splice Strand
CG32647-RA 1..702 414..1115 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:35:49 Download gff for RH40632.complete
Subject Subject Range Query Range Percent Splice Strand
CG32647-RA 1..702 414..1115 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:50:51 Download gff for RH40632.complete
Subject Subject Range Query Range Percent Splice Strand
CG32647-RB 1..702 414..1115 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:27:23 Download gff for RH40632.complete
Subject Subject Range Query Range Percent Splice Strand
CG32647-RA 1..702 414..1115 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:00:07 Download gff for RH40632.complete
Subject Subject Range Query Range Percent Splice Strand
CG32647-RA 1..702 414..1115 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:07:33 Download gff for RH40632.complete
Subject Subject Range Query Range Percent Splice Strand
CG32647-RA 1..1215 2..1216 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:35:48 Download gff for RH40632.complete
Subject Subject Range Query Range Percent Splice Strand
CG32647-RA 1..1215 2..1216 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:50:51 Download gff for RH40632.complete
Subject Subject Range Query Range Percent Splice Strand
CG32647-RA 1..1215 2..1216 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:27:23 Download gff for RH40632.complete
Subject Subject Range Query Range Percent Splice Strand
CG32647-RA 1..1215 2..1216 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:00:07 Download gff for RH40632.complete
Subject Subject Range Query Range Percent Splice Strand
CG32647-RA 1..1215 2..1216 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:11:44 Download gff for RH40632.complete
Subject Subject Range Query Range Percent Splice Strand
X 12777077..12777225 760..908 100 <- Minus
X 12776572..12776798 990..1216 100 <- Minus
X 12776869..12776949 909..989 100 <- Minus
X 12783089..12783589 259..759 100 <- Minus
X 12784702..12784958 1..258 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:11:44 Download gff for RH40632.complete
Subject Subject Range Query Range Percent Splice Strand
X 12777077..12777225 760..908 100 <- Minus
X 12776572..12776798 990..1216 100 <- Minus
X 12776869..12776949 909..989 100 <- Minus
X 12783089..12783589 259..759 100 <- Minus
X 12784702..12784958 1..258 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:11:44 Download gff for RH40632.complete
Subject Subject Range Query Range Percent Splice Strand
X 12777077..12777225 760..908 100 <- Minus
X 12776572..12776798 990..1216 100 <- Minus
X 12776869..12776949 909..989 100 <- Minus
X 12783089..12783589 259..759 100 <- Minus
X 12784702..12784958 1..258 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:50:51 Download gff for RH40632.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12670605..12670831 990..1216 100 <- Minus
arm_X 12670902..12670982 909..989 100 <- Minus
arm_X 12671110..12671258 760..908 100 <- Minus
arm_X 12677122..12677622 259..759 100 <- Minus
arm_X 12678735..12678991 1..258 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:59:53 Download gff for RH40632.complete
Subject Subject Range Query Range Percent Splice Strand
X 12784670..12784896 990..1216 100 <- Minus
X 12784967..12785047 909..989 100 <- Minus
X 12785175..12785323 760..908 100 <- Minus
X 12791187..12791687 259..759 100 <- Minus
X 12792800..12793056 1..258 99   Minus

RH40632.hyp Sequence

Translation from 413 to 1114

> RH40632.hyp
MTKAAAAAATATATTTAAATPIKTAAATKAITINGPQTTWRRQRGCCTTT
TTAAIRNMQQQKQKQQQQSYLQRLKAAGRLGAWPPPMTSLLWLPTDYLAQ
LILALCLLGCLSPFTAALEEDCVDFQGNKVNHGMLYVPGPGVCSLCVCYH
SEPLWCKAIYCDPPYFCKNFRVGERCCEFECLDPPGEDKLYQERMRKRAE
ILAGNSTASNVQLAPIAMSTIMLGFLGNSFLNL*

RH40632.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:10:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG32647-PD 233 CG32647-PD 1..233 1..233 1251 100 Plus
CG32647-PC 233 CG32647-PC 1..233 1..233 1251 100 Plus
CG32647-PA 233 CG32647-PA 1..233 1..233 1251 100 Plus
CG32647-PB 233 CG32647-PB 1..233 1..233 1251 100 Plus
CG42404-PF 105 CG42404-PF 29..98 122..188 147 40 Plus

RH40632.pep Sequence

Translation from 413 to 1114

> RH40632.pep
MTKAAAAAATATATTTAAATPIKTAAATKAITINGPQTTWRRQRGCCTTT
TTAAIRNMQQQKQKQQQQSYLQRLKAAGRLGAWPPPMTSLLWLPTDYLAQ
LILALCLLGCLSPFTAALEEDCVDFQGNKVNHGMLYVPGPGVCSLCVCYH
SEPLWCKAIYCDPPYFCKNFRVGERCCEFECLDPPGEDKLYQERMRKRAE
ILAGNSTASNVQLAPIAMSTIMLGFLGNSFLNL*

RH40632.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:20:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20890-PA 141 GF20890-PA 20..141 113..233 637 94.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:20:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19539-PA 231 GG19539-PA 1..231 1..233 964 88.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:20:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24570-PA 216 GH24570-PA 96..216 115..233 614 90.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:47:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG32647-PD 233 CG32647-PD 1..233 1..233 1251 100 Plus
CG32647-PC 233 CG32647-PC 1..233 1..233 1251 100 Plus
CG32647-PA 233 CG32647-PA 1..233 1..233 1251 100 Plus
CG32647-PB 233 CG32647-PB 1..233 1..233 1251 100 Plus
CG42404-PF 105 CG42404-PF 29..98 122..188 147 40 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:20:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11067-PA 129 GI11067-PA 12..129 116..233 618 92.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:20:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22966-PA 248 GL22966-PA 23..248 7..233 694 63.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:20:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17040-PA 248 GA17040-PA 28..248 4..233 685 65.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:20:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11533-PA 175 GM11533-PA 1..175 58..233 929 98.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:20:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15917-PA 147 GD15917-PA 26..147 112..233 657 97.5 Plus
Dsim\GD15870-PA 119 GD15870-PA 38..118 34..116 304 88 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:20:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16927-PA 141 GJ16927-PA 10..141 102..233 620 86.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:20:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10277-PA 255 GK10277-PA 32..255 12..233 659 63.2 Plus