Clone RH40649 Report

Search the DGRC for RH40649

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:406
Well:49
Vector:pFlc-1
Associated Gene/Transcriptana-RA
Protein status:RH40649.pep: gold
Sequenced Size:2419

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
ana 2008-04-29 Picked prior to 5.5
ana 2008-08-15 Release 5.9 accounting
ana 2008-12-18 5.12 accounting

Clone Sequence Records

RH40649.complete Sequence

2419 bp assembled on 2011-10-11

GenBank Submission: BT132678.1

> RH40649.complete
GACTTCATACTTGGTTCTTAGAGCGAACACATCGAGAAGCTGAACACAAC
AGCTACAAAAATTAACAAATTCGCATGTCCGTATCCAGCTGAAGTGTAAA
AGATAGCATTTTAATTGCTGGCAAAAATGCAGTGAACAAACGTTGAATTT
AAGTGAAGAAGAAAACTACAACTATTTCCGTGTGAAAACATTTAGTTTGG
CAACAGACCAAGAGCAGAACACAAAAATGGCAAGTGCTATGCGTGGTGAA
AAGTGCGAAAGGAGCCGCATTCGAGAGCTCGTCCTGATCCTGTCGCTGAT
CACCATGGCCGGCGACTCGAGGGCCACTCCCTTCGATCCCTCCTTCTTCA
TAGAGGGCGTGCAGTCGGAGGTGGTTAATCCGTTCAACCGCACCATCCTG
AATCGCTTCAACCTGACCGAGGAACAGATCCTGAGCATCCAGAACCGCAG
CAATCCGAACATGCGCGACGACTCCGCCCAGTCCTCCAACCAGCAGTATC
TGCAGCAGGTCGCCACTCAGCGACTCAACGATATCTTTAAGCGCGTCCAG
AAGGCCATCTCAAACGAGCCCAACGGCAGCGCATCCAAGGAGAAGGCCGG
CTTTCCCATTTGCAATGCGGAGACAACCAACCCGGAGGACTGGTCCCTGG
GCAACAATGTGACGCTCCAGTTTGCCAGCAGTGTTTTCATATCCAATAAC
GACGACCGTCTGAGCAGCGCCCTTCTCCGCCTCTACAAGACCAATCCTGG
CCAGACTCGCGAGCACAATCCCGGCCAGGCTTCGACTCAGCCCATCAGCA
CTGAGAACCCGGGCAATACGGCTCCAAATTGCGCGGAGCAGCCACCCGTG
GGTCCTCAAATCCGTGTCACCGTCTCCATTGTCCACCAGCAGAGGAAGAA
ACAGCGCAAGAAGCGCACCTGCAACACCGCCATGCTGAGCAGCTCCTCCA
CCGGCTGGGTGGAGATCGACGTGAAGTGCGCCCTCGCCTACTGGGAGCAG
CAGCACCGCCAGCAGCTTCGCCAGCAGCAGCCGCTGCAGCCCCAGCTGAC
CGCCAGCGTGGTGGGCATCCTGATGATCGAGGTGCACGACGATGAGGAGA
ATCTGCTGAGGCCGGGGCTCTACTTCGCGCCACCCACTTGCGACCAGGCA
GACATTGCTGTCCCATGGAGCGTTTACCGAACAGAACCGTTTAAGTCTCA
TCTGGCGAGTTGGACATTGCCAAGAAAACCAAGGCTAGACATCTTCTTCA
ACGGTAGCAACTCCATGAAGAACAGCTACAACACCCCCAAGAGCAGAGCG
TTTATCGAATCCACCACATCCAACTCACCCACGATCGACAACCAGCTGGA
CGAGAGCGGCGAGTACGAGAGCCAGCAGCGTGTGCATGCCCCCCTGGTCC
ACCACCGGCGGCACCACCACAACCACCAGCAACCGGAATCGGAGTCCGAG
TCCGCACAACTCGAGGCCGAGATCGAGGCGGAGGAGCTGATGTCCTCGGC
GAGCAACAGTGAACAGCAAATGGAGCCGATTTCGAACCACCACCGACATC
GGACCGGCCACCATCACCCGCATCACCAGCTGCACCAGCACCATCACCAT
CATCATCGCCACACCAAGCACCACAGGATTCCAGCCCACAAGCAGGAATA
GATGCCACAATCACGCGCCCATCGATTCCCCACTTTCTCTCCCCCGAACT
CATGCTGGTCTTAAAATAATGTCTTGTTTTATATTTGTAACTTTAGGGCC
AGTTGACTTAATTAGTTTTTAGTTCATCGGTTTGCCAACCGCGTAACCTT
ATTTAAATTATATTTTAAGTTTCGTTGTAAGCAGTGCCCATTTTCGGTCA
AAATTTGATTTTATTTTTAAATCTCCTGTACTCTAGAAGCCTGTGATTTA
GATGGGGTTGAAGTCGCACATTTTTGCAACAAAAATTGTCAAAGCCTCAA
GAGGAAGGCAAGCCCGGAAAACAATTTATACGAATTTAAGTAATATATTT
AGATGCTAAACAAAATTAATCAATGCCTTATCGAAGCATTACAATCCCTA
ACTTCTGCACAATTCCCTCGAAAACCAGCAAGCCAAGAACGAACCAAATC
AAGCATTTTCGATTCTATTGATAAGTGATTAAAGTCCCGCAATATAGTTG
TGTTACATCATAAATAAGTCACTAGGTTTAAAGTGCCTTTCTGCTAAATC
TCAAAATTCCCCATTGGAACCCATTGACCCTTTGGTTTTAAGATTTTAAG
AACCACATGTTCATCCAGTCAAAGCACATTGTATCCCTAATCCTTCATAT
CCATACCTACTAAGTGCATTTGCAAGTCGATAAATGAAATATAAAGATGA
ATATGATCTATTAATAAATTTAAATCGCACGAACACGTGTAGAGTTGCGA
ATCAAAAAAAAAAAAAAAA

RH40649.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:03:25
Subject Length Description Subject Range Query Range Score Percent Strand
ana-RA 2589 ana-RA 51..2445 18..2412 11975 100 Plus
ana.b 1956 ana.b 70..1943 539..2412 9370 100 Plus
ana-RB 2476 ana-RB 961..2454 919..2412 7470 100 Plus
ana-RB 2476 ana-RB 51..951 18..918 4505 100 Plus
Blast to cDNA_contaminate.fasta performed 2011-10-11 11:50:14
Subject Length Description Subject Range Query Range Score Percent Strand
E.coli 1088 E.coli 195..231 3741..3705 170 97.2 Minus
E.coli 1088 E.coli 208..244 3705..3741 170 97.2 Plus
E.coli 1088 E.coli 195..231 3741..3705 170 97.2 Minus
E.coli 1088 E.coli 208..244 3705..3741 170 97.2 Plus
E.coli 1088 E.coli 195..231 3741..3705 170 97.2 Minus
E.coli 1088 E.coli 208..244 3705..3741 170 97.2 Plus
Blast to cDNA_contaminate.fasta performed 2011-10-11 11:50:14
Subject Length Description Subject Range Query Range Score Percent Strand
E.coli 1088 E.coli 195..231 3741..3705 170 97.2 Minus
E.coli 1088 E.coli 208..244 3705..3741 170 97.2 Plus
E.coli 1088 E.coli 195..231 3741..3705 170 97.2 Minus
E.coli 1088 E.coli 208..244 3705..3741 170 97.2 Plus
E.coli 1088 E.coli 195..231 3741..3705 170 97.2 Minus
E.coli 1088 E.coli 208..244 3705..3741 170 97.2 Plus
Blast to cDNA_contaminate.fasta performed 2011-10-11 11:50:14
Subject Length Description Subject Range Query Range Score Percent Strand
E.coli 1088 E.coli 195..231 3741..3705 170 97.2 Minus
E.coli 1088 E.coli 208..244 3705..3741 170 97.2 Plus
E.coli 1088 E.coli 195..231 3741..3705 170 97.2 Minus
E.coli 1088 E.coli 208..244 3705..3741 170 97.2 Plus
E.coli 1088 E.coli 195..231 3741..3705 170 97.2 Minus
E.coli 1088 E.coli 208..244 3705..3741 170 97.2 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:16:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 4963931..4965111 1223..2403 5845 99.7 Plus
chr2R 21145070 chr2R 4956690..4957210 2..522 2605 100 Plus
chr2R 21145070 chr2R 4961633..4962013 522..902 1875 99.5 Plus
chr2R 21145070 chr2R 4962403..4962651 903..1151 1245 100 Plus
chr2R 21145070 chr2R 4963433..4963508 1149..1224 380 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:28:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:16:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9076368..9077551 1223..2406 5920 100 Plus
2R 25286936 2R 9069106..9069626 2..522 2605 100 Plus
2R 25286936 2R 9074070..9074450 522..902 1905 100 Plus
2R 25286936 2R 9074840..9075088 903..1151 1245 100 Plus
2R 25286936 2R 9075870..9075945 1149..1224 380 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:01:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 9077567..9078750 1223..2406 5920 100 Plus
2R 25260384 2R 9070305..9070825 2..522 2605 100 Plus
2R 25260384 2R 9075269..9075649 522..902 1905 100 Plus
2R 25260384 2R 9076039..9076287 903..1151 1245 100 Plus
2R 25260384 2R 9077069..9077144 1149..1224 380 100 Plus
Blast to na_custom.ecoli performed 2008-06-18 14:45:35
Subject Length Description Subject Range Query Range Score Percent Strand
E.coli 1088 E.coli 195..231 3741..3705 170 97.2 Minus
E.coli 1088 E.coli 208..244 3705..3741 170 97.2 Plus
Blast to na_te.dros performed 2019-03-15 11:16:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2427..2851 1221..1647 147 54.9 Plus

RH40649.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:17:14 Download gff for RH40649.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 4961634..4962013 523..902 99 -> Plus
chr2R 4962403..4962495 903..995 100 == Plus
chr2R 4962547..4962651 1047..1151 100 -> Plus
chr2R 4963436..4963508 1152..1224 100 -> Plus
chr2R 4963933..4964266 1225..1558 100 == Plus
chr2R 4956689..4957210 1..522 99 -> Plus
chr2R 4964325..4965111 1617..2403 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:46:22 Download gff for RH40649.complete
Subject Subject Range Query Range Percent Splice Strand
ana-RA 1..1425 243..1667 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-10-11 12:03:57 Download gff for RH40649.complete
Subject Subject Range Query Range Percent Splice Strand
ana-RA 1..1425 227..1651 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:41:25 Download gff for RH40649.complete
Subject Subject Range Query Range Percent Splice Strand
ana-RA 1..1425 227..1651 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:52:09 Download gff for RH40649.complete
Subject Subject Range Query Range Percent Splice Strand
ana-RA 1..1425 243..1667 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:28:27 Download gff for RH40649.complete
Subject Subject Range Query Range Percent Splice Strand
ana-RA 1..1425 227..1651 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:27:36 Download gff for RH40649.complete
Subject Subject Range Query Range Percent Splice Strand
ana-RA 1..2407 16..2422 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-11 12:03:56 Download gff for RH40649.complete
Subject Subject Range Query Range Percent Splice Strand
ana-RA 5..2407 1..2403 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:41:25 Download gff for RH40649.complete
Subject Subject Range Query Range Percent Splice Strand
ana-RA 9..2411 1..2403 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:52:09 Download gff for RH40649.complete
Subject Subject Range Query Range Percent Splice Strand
ana-RA 1..2407 16..2422 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:28:27 Download gff for RH40649.complete
Subject Subject Range Query Range Percent Splice Strand
ana-RA 9..2411 1..2403 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:17:14 Download gff for RH40649.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9069105..9069626 1..522 99 -> Plus
2R 9074071..9074450 523..902 100 -> Plus
2R 9074840..9075088 903..1151 100 -> Plus
2R 9075873..9075945 1152..1224 100 -> Plus
2R 9076370..9077548 1225..2403 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:17:14 Download gff for RH40649.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9069105..9069626 1..522 99 -> Plus
2R 9074071..9074450 523..902 100 -> Plus
2R 9074840..9075088 903..1151 100 -> Plus
2R 9075873..9075945 1152..1224 100 -> Plus
2R 9076370..9077548 1225..2403 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:17:14 Download gff for RH40649.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9069105..9069626 1..522 99 -> Plus
2R 9074071..9074450 523..902 100 -> Plus
2R 9074840..9075088 903..1151 100 -> Plus
2R 9075873..9075945 1152..1224 100 -> Plus
2R 9076370..9077548 1225..2403 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:41:25 Download gff for RH40649.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4962345..4962593 903..1151 100 -> Plus
arm_2R 4963378..4963450 1152..1224 100 -> Plus
arm_2R 4956610..4957131 1..522 99 -> Plus
arm_2R 4961576..4961955 523..902 100 -> Plus
arm_2R 4963875..4965053 1225..2403 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:48:17 Download gff for RH40649.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9070304..9070825 1..522 99 -> Plus
2R 9075270..9075649 523..902 100 -> Plus
2R 9076039..9076287 903..1151 100 -> Plus
2R 9077072..9077144 1152..1224 100 -> Plus
2R 9077569..9078747 1225..2403 100   Plus

RH40649.hyp2 Sequence

Translation from 226 to 1650

> RH40649.hyp2
MASAMRGEKCERSRIRELVLILSLITMAGDSRATPFDPSFFIEGVQSEVV
NPFNRTILNRFNLTEEQILSIQNRSNPNMRDDSAQSSNQQYLQQVATQRL
NDIFKRVQKAISNEPNGSASKEKAGFPICNAETTNPEDWSLGNNVTLQFA
SSVFISNNDDRLSSALLRLYKTNPGQTREHNPGQASTQPISTENPGNTAP
NCAEQPPVGPQIRVTVSIVHQQRKKQRKKRTCNTAMLSSSSTGWVEIDVK
CALAYWEQQHRQQLRQQQPLQPQLTASVVGILMIEVHDDEENLLRPGLYF
APPTCDQADIAVPWSVYRTEPFKSHLASWTLPRKPRLDIFFNGSNSMKNS
YNTPKSRAFIESTTSNSPTIDNQLDESGEYESQQRVHAPLVHHRRHHHNH
QQPESESESAQLEAEIEAEELMSSASNSEQQMEPISNHHRHRTGHHHPHH
QLHQHHHHHHRHTKHHRIPAHKQE*

RH40649.hyp2 Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:20:43
Subject Length Description Subject Range Query Range Score Percent Strand
ana-PA 474 CG8084-PA 1..474 1..474 2517 100 Plus
ana-PB 477 CG8084-PB 1..477 1..474 2500 99.2 Plus
ana-PC 390 CG8084-PC 10..390 94..474 2030 98.4 Plus

RH40649.pep Sequence

Translation from 226 to 1650

> RH40649.pep
MASAMRGEKCERSRIRELVLILSLITMAGDSRATPFDPSFFIEGVQSEVV
NPFNRTILNRFNLTEEQILSIQNRSNPNMRDDSAQSSNQQYLQQVATQRL
NDIFKRVQKAISNEPNGSASKEKAGFPICNAETTNPEDWSLGNNVTLQFA
SSVFISNNDDRLSSALLRLYKTNPGQTREHNPGQASTQPISTENPGNTAP
NCAEQPPVGPQIRVTVSIVHQQRKKQRKKRTCNTAMLSSSSTGWVEIDVK
CALAYWEQQHRQQLRQQQPLQPQLTASVVGILMIEVHDDEENLLRPGLYF
APPTCDQADIAVPWSVYRTEPFKSHLASWTLPRKPRLDIFFNGSNSMKNS
YNTPKSRAFIESTTSNSPTIDNQLDESGEYESQQRVHAPLVHHRRHHHNH
QQPESESESAQLEAEIEAEELMSSASNSEQQMEPISNHHRHRTGHHHPHH
QLHQHHHHHHRHTKHHRIPAHKQE*

RH40649.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 23:17:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12224-PA 473 GF12224-PA 1..433 1..437 1412 66.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 23:17:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23405-PA 473 GG23405-PA 1..473 1..474 1962 94.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 23:17:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21635-PA 485 GH21635-PA 40..416 41..384 687 49.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:07:27
Subject Length Description Subject Range Query Range Score Percent Strand
ana-PA 474 CG8084-PA 1..474 1..474 2517 100 Plus
ana-PB 477 CG8084-PB 1..477 1..474 2500 99.2 Plus
ana-PC 390 CG8084-PC 10..390 94..474 2030 98.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 23:17:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20089-PA 482 GI20089-PA 27..411 33..385 710 49.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 23:17:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17613-PA 478 GL17613-PA 1..455 1..440 1002 59.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 23:17:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20811-PA 478 GA20811-PA 1..455 1..440 1003 59 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 23:17:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21087-PA 472 GM21087-PA 1..472 1..474 2450 96.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 23:17:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10624-PA 474 GD10624-PA 1..474 1..474 2492 97.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 23:17:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19855-PA 484 GJ19855-PA 32..414 33..385 690 47.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 23:17:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19247-PA 475 GE19247-PA 1..475 1..474 1994 93.7 Plus

RH40649.hyp Sequence

Translation from 242 to 1666

> RH40649.hyp
MASAMRGEKCERSRIRELVLILSLITMAGDSRATPFDPSFFIEGVQSEVV
NPFNRTILNRFNLTEEQILSIQNRSNPNMRDDSAQSSNQQYLQQVATQRL
NDIFKRVQKAISNEPNGSASKEKAGFPICNAETTNPEDWSLGNNVTLQFA
SSVFISNNDDRLSSALLRLYKTNPGQTREHNPGQASTQPISTENPGNTAP
NCAEQPPVGPQIRVTVSIVHQQRKKQRKKRTCNTAMLSSSSTGWVEIDVK
CALAYWEQQHRQQLRQQQPLQPQLTASVVGILMIEVHDDEENLLRPGLYF
APPTCDQADIAVPWSVYRTEPFKSHLASWTLPRKPRLDIFFNGSNSMKNS
YNTPKSRAFIESTTSNSPTIDNQLDESGEYESQQRVHAPLVHHRRHHHNH
QQPESESESAQLEAEIEAEELMSSASNSEQQMEPISNHHRHRTGHHHPHH
QLHQHHHHHHRHTKHHRIPAHKQE*

RH40649.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:54
Subject Length Description Subject Range Query Range Score Percent Strand
ana-PA 474 CG8084-PA 1..474 1..474 2517 100 Plus
ana-PB 477 CG8084-PB 1..477 1..474 2500 99.2 Plus
ana-PC 390 CG8084-PC 10..390 94..474 2030 98.4 Plus