BDGP Sequence Production Resources |
Search the DGRC for RH41996
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 419 |
Well: | 96 |
Vector: | pFlc-1 |
Associated Gene/Transcript | t-RA |
Protein status: | RH41996.pep: gold |
Preliminary Size: | 1395 |
Sequenced Size: | 2009 |
Gene | Date | Evidence |
---|---|---|
CG12120 | 2002-01-01 | Sim4 clustering to Release 2 |
CG12120 | 2002-06-26 | Blastp of sequenced clone |
CG12120 | 2003-01-01 | Sim4 clustering to Release 3 |
t | 2008-04-29 | Release 5.5 accounting |
t | 2008-08-15 | Release 5.9 accounting |
t | 2008-12-18 | 5.12 accounting |
2009 bp (2009 high quality bases) assembled on 2002-06-26
GenBank Submission: AY128492
> RH41996.complete GAGTTTGAATTCTGCCTTCAAGCGCTCTAGAACAAATCAGCTGGCATTCT GATTGGAATACTAACTATTTTTTGTTTTTTTGTTTGTTTACAACTCACAC TTTGTTATCATCAACAGACGCGTCTTATTCTTGATTACCTTTTCTATTTT GCGCCGAGTGCAAAGAGCTTTCCACTGCTTAAAACAAAAAAAAAAGAGTT GTTCCCATCGCCGAACCCCGAACCCATTTTAGATCAACAGATCTCCAAGA TGTCCTCCGGAAAGATCCTGCCACGTCGCCAGGCGGTGCCAGTGCTCTAC ACCAGGGGCACCCATTACGAAGTTGGCTTCGATATGGGTCGCACATTTGG GTCCATGATCAAGAACTTTCTGATCTTATCGAAGCCCCTCAACGAGACCT ACTTGCCGCTCTACCAGTCGCCAAAAGGCAGGCAGATCTACAACGAGACC CTGGGTTCGGTGAAGGACAGCTTCCCTCAATATGTGCGCGAACTGGAGGG CGTGGCCGATGGTGCGGAGGTGGAATTCCATAAGCTATTTTTGCTGCATC TGGATGAGATTCTACCGCAGGCATTGAAGCACCAACCACGTAGCAAAAAC CAACCAACCGGCTGCTCCACCATCATTGTTAACCAAAAGAATTGCCGCCT TTTGGGCCACACGGAGGATGCACTGACGGAGACCCTGAATCACTACTACT TCGTGGTGGCACACATCATCAGTGACAAGCCGCAGGGCAAGTACAACGTT AAGGAGGAGCACTTCATGTCCCTCTGCTACGCTGGCCATCTGCCCGGATA CACTATGAGCCATAATCATCATGGATTGGTCTTCAGCATCAACACCATCA GTGCGGAGCTCTTGCGCAGCGGCAAGACACCGCGACACTTCATCACCCGG GCTCTGTTGGCCACCAGCAACGTGGACGATGCCTTCCGCGTGCTCAAGGA TGCGGGAGTGGGTGCAGCGGATGCCTGTTCCATCAATTTCACCTTCCTGG CGGATCCCCGCCAAATGTGCTACAATGTGGAGATGGCACCATCGCCGGAC CGCAAGAATGAGTCTCATTTGAATATCAAGGAGGTGCCGCTGGGCGAGCA CAACTACCATGTCAATCAATTCGATCGCATTCGGCAGGATCAGGCCAACG ATCTGATGATTAGCTCGAGCATCTCCAGGATGCAAACATTTGGAGCGTAC AATCCGCCGATGAGCGAGCAGGATGTGCGCCACATGCTGGGCGACGTGTC CGGCGGAGTTTACTGCGTCTGGCGGGAGAACAACAGCTGCGACGAGGTGG TCAAGACCATTGCCGTTGGCATCTTCGATCTCAGTGCCAGGACCATTTCC CTGTATTCCGACAATCCCAGCGAGACGGAGCCACACTGCCGCCTGCCGCT GCTCTACAAGTAGATGCGTAATCCGTATCGGTAGCCATGGCATTCATCGC GTCTTTACTTAATCATTCTCAAATGACTATAACATAATATCAATCTATGA TCTATATAACATAACTATAACATAATATCAATCTATGATCTATATATCAG ATACAGGTATTGCCTATAATTAGGCCCTCTTTCAAAACAGTTTTCGAACT GCGATACGATTTCAATATGCTCTACTTTTGATTTCGCCATATATGCGCAT ATATATATATTTTTTTGTATACAATATTCATACAAATTATCAGTATATTA ATATTTTAAAAGATTTTTTAAATCAAAAATAGTTGAAATGTTTTTTTTTC TTACCTTAACTCAAAAGAAGTTCACTTTCCGTTCTTTGGCTCATTCTAAA TTTAAAATTGTAACAAAAGTACATATATTTATATTGATATTTTACCTACT CATTACTTTGTGTCATCGAATGTTTCTTTTTATGGTTGAAAAGTATATAA TTATATACTACGGAATCTGATATAAATATATATATATATATATATATATA TTAAAATGTTTTTAATAAATAAAAAATATTGTTTTATAAACATAAAAAAA AAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
t-RA | 2067 | t-RA | 76..2067 | 2..1993 | 9960 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 9109459..9110333 | 1993..1119 | 4345 | 99.8 | Minus |
chrX | 22417052 | chrX | 9114758..9115093 | 337..2 | 1680 | 100 | Minus |
chrX | 22417052 | chrX | 9110757..9110991 | 880..646 | 1145 | 99.1 | Minus |
chrX | 22417052 | chrX | 9110577..9110698 | 1002..881 | 610 | 100 | Minus |
chrX | 22417052 | chrX | 9110392..9110508 | 1118..1002 | 585 | 100 | Minus |
chrX | 22417052 | chrX | 9111057..9111169 | 645..533 | 565 | 100 | Minus |
chrX | 22417052 | chrX | 9113029..9113132 | 534..431 | 520 | 100 | Minus |
chrX | 22417052 | chrX | 9113234..9113329 | 431..336 | 480 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 9217654..9218529 | 1994..1119 | 4380 | 100 | Minus |
X | 23542271 | X | 9222939..9223274 | 337..2 | 1680 | 100 | Minus |
X | 23542271 | X | 9218953..9219187 | 880..646 | 1175 | 100 | Minus |
X | 23542271 | X | 9218773..9218894 | 1002..881 | 610 | 100 | Minus |
X | 23542271 | X | 9218588..9218704 | 1118..1002 | 585 | 100 | Minus |
X | 23542271 | X | 9219253..9219365 | 645..533 | 565 | 100 | Minus |
X | 23542271 | X | 9221210..9221313 | 534..431 | 520 | 100 | Minus |
X | 23542271 | X | 9221415..9221510 | 431..336 | 480 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 9225752..9226627 | 1994..1119 | 4380 | 100 | Minus |
X | 23527363 | X | 9231037..9231372 | 337..2 | 1680 | 100 | Minus |
X | 23527363 | X | 9227051..9227285 | 880..646 | 1175 | 100 | Minus |
X | 23527363 | X | 9226871..9226992 | 1002..881 | 610 | 100 | Minus |
X | 23527363 | X | 9226686..9226802 | 1118..1002 | 585 | 100 | Minus |
X | 23527363 | X | 9227351..9227463 | 645..533 | 565 | 100 | Minus |
X | 23527363 | X | 9229308..9229411 | 534..431 | 520 | 100 | Minus |
X | 23527363 | X | 9229513..9229608 | 431..336 | 480 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
TAHRE | 10463 | TAHRE OSV 10463bp | 6713..6852 | 1805..1942 | 119 | 57 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 9109459..9110333 | 1119..1993 | 99 | <- | Minus |
chrX | 9110392..9110508 | 1002..1118 | 100 | <- | Minus |
chrX | 9110578..9110698 | 881..1001 | 100 | <- | Minus |
chrX | 9110757..9110991 | 646..880 | 99 | <- | Minus |
chrX | 9111057..9111167 | 535..645 | 100 | <- | Minus |
chrX | 9113029..9113132 | 431..534 | 100 | <- | Minus |
chrX | 9113235..9113328 | 337..430 | 100 | <- | Minus |
chrX | 9114759..9115093 | 1..336 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
t-RA | 1..1164 | 250..1413 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
t-RA | 1..1164 | 250..1413 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
t-RA | 1..1164 | 250..1413 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
t-RA | 1..1164 | 250..1413 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
t-RA | 1..1164 | 250..1413 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
t-RA | 1..1975 | 19..1993 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
t-RA | 1..1975 | 19..1993 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
t-RA | 1..1975 | 19..1993 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
t-RA | 1..1975 | 19..1993 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
t-RA | 1..1975 | 19..1993 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 9217655..9218529 | 1119..1993 | 100 | <- | Minus |
X | 9218588..9218704 | 1002..1118 | 100 | <- | Minus |
X | 9218774..9218894 | 881..1001 | 100 | <- | Minus |
X | 9218953..9219187 | 646..880 | 100 | <- | Minus |
X | 9219253..9219363 | 535..645 | 100 | <- | Minus |
X | 9221210..9221313 | 431..534 | 100 | <- | Minus |
X | 9221416..9221509 | 337..430 | 100 | <- | Minus |
X | 9222940..9223274 | 1..336 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 9217655..9218529 | 1119..1993 | 100 | <- | Minus |
X | 9218588..9218704 | 1002..1118 | 100 | <- | Minus |
X | 9218774..9218894 | 881..1001 | 100 | <- | Minus |
X | 9218953..9219187 | 646..880 | 100 | <- | Minus |
X | 9219253..9219363 | 535..645 | 100 | <- | Minus |
X | 9221210..9221313 | 431..534 | 100 | <- | Minus |
X | 9221416..9221509 | 337..430 | 100 | <- | Minus |
X | 9222940..9223274 | 1..336 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 9217655..9218529 | 1119..1993 | 100 | <- | Minus |
X | 9218588..9218704 | 1002..1118 | 100 | <- | Minus |
X | 9218774..9218894 | 881..1001 | 100 | <- | Minus |
X | 9218953..9219187 | 646..880 | 100 | <- | Minus |
X | 9219253..9219363 | 535..645 | 100 | <- | Minus |
X | 9221210..9221313 | 431..534 | 100 | <- | Minus |
X | 9221416..9221509 | 337..430 | 100 | <- | Minus |
X | 9222940..9223274 | 1..336 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 9111688..9112562 | 1119..1993 | 100 | <- | Minus |
arm_X | 9112621..9112737 | 1002..1118 | 100 | <- | Minus |
arm_X | 9112807..9112927 | 881..1001 | 100 | <- | Minus |
arm_X | 9112986..9113220 | 646..880 | 100 | <- | Minus |
arm_X | 9113286..9113396 | 535..645 | 100 | <- | Minus |
arm_X | 9115243..9115346 | 431..534 | 100 | <- | Minus |
arm_X | 9115449..9115542 | 337..430 | 100 | <- | Minus |
arm_X | 9116973..9117307 | 1..336 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 9225753..9226627 | 1119..1993 | 100 | <- | Minus |
X | 9226686..9226802 | 1002..1118 | 100 | <- | Minus |
X | 9226872..9226992 | 881..1001 | 100 | <- | Minus |
X | 9227051..9227285 | 646..880 | 100 | <- | Minus |
X | 9227351..9227461 | 535..645 | 100 | <- | Minus |
X | 9229308..9229411 | 431..534 | 100 | <- | Minus |
X | 9229514..9229607 | 337..430 | 100 | <- | Minus |
X | 9231038..9231372 | 1..336 | 99 | Minus |
Translation from 249 to 1412
> RH41996.pep MSSGKILPRRQAVPVLYTRGTHYEVGFDMGRTFGSMIKNFLILSKPLNET YLPLYQSPKGRQIYNETLGSVKDSFPQYVRELEGVADGAEVEFHKLFLLH LDEILPQALKHQPRSKNQPTGCSTIIVNQKNCRLLGHTEDALTETLNHYY FVVAHIISDKPQGKYNVKEEHFMSLCYAGHLPGYTMSHNHHGLVFSINTI SAELLRSGKTPRHFITRALLATSNVDDAFRVLKDAGVGAADACSINFTFL ADPRQMCYNVEMAPSPDRKNESHLNIKEVPLGEHNYHVNQFDRIRQDQAN DLMISSSISRMQTFGAYNPPMSEQDVRHMLGDVSGGVYCVWRENNSCDEV VKTIAVGIFDLSARTISLYSDNPSETEPHCRLPLLYK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF19099-PA | 387 | GF19099-PA | 1..387 | 1..387 | 2008 | 94.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18991-PA | 387 | GG18991-PA | 1..387 | 1..387 | 2067 | 97.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12537-PA | 387 | GH12537-PA | 1..387 | 1..387 | 1875 | 88.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
t-PB | 387 | CG12120-PB | 1..387 | 1..387 | 2052 | 100 | Plus |
t-PA | 387 | CG12120-PA | 1..387 | 1..387 | 2052 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15530-PA | 400 | GI15530-PA | 14..400 | 1..387 | 1744 | 84.2 | Plus |
Dmoj\GI15531-PA | 353 | GI15531-PA | 18..353 | 9..387 | 1148 | 58.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18287-PA | 215 | GL18287-PA | 1..215 | 173..387 | 1052 | 88.4 | Plus |
Dper\GL22418-PA | 119 | GL22418-PA | 1..119 | 133..290 | 532 | 69.6 | Plus |
Dper\GL18286-PA | 101 | GL18286-PA | 1..96 | 1..96 | 485 | 93.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11415-PA | 376 | GA11415-PA | 1..376 | 1..376 | 1864 | 90.7 | Plus |
Dpse\GA28142-PA | 332 | GA28142-PA | 41..332 | 96..387 | 1441 | 89.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22371-PA | 387 | GM22371-PA | 1..387 | 1..387 | 2086 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16075-PA | 387 | GD16075-PA | 1..387 | 1..387 | 2086 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14875-PA | 400 | GJ14875-PA | 14..400 | 1..387 | 1874 | 88.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25797-PA | 388 | GK25797-PA | 1..385 | 1..385 | 1893 | 89.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE15464-PA | 387 | GE15464-PA | 1..387 | 1..387 | 2082 | 99.2 | Plus |
Translation from 249 to 1412
> RH41996.hyp MSSGKILPRRQAVPVLYTRGTHYEVGFDMGRTFGSMIKNFLILSKPLNET YLPLYQSPKGRQIYNETLGSVKDSFPQYVRELEGVADGAEVEFHKLFLLH LDEILPQALKHQPRSKNQPTGCSTIIVNQKNCRLLGHTEDALTETLNHYY FVVAHIISDKPQGKYNVKEEHFMSLCYAGHLPGYTMSHNHHGLVFSINTI SAELLRSGKTPRHFITRALLATSNVDDAFRVLKDAGVGAADACSINFTFL ADPRQMCYNVEMAPSPDRKNESHLNIKEVPLGEHNYHVNQFDRIRQDQAN DLMISSSISRMQTFGAYNPPMSEQDVRHMLGDVSGGVYCVWRENNSCDEV VKTIAVGIFDLSARTISLYSDNPSETEPHCRLPLLYK*