Clone RH41996 Report

Search the DGRC for RH41996

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:419
Well:96
Vector:pFlc-1
Associated Gene/Transcriptt-RA
Protein status:RH41996.pep: gold
Preliminary Size:1395
Sequenced Size:2009

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12120 2002-01-01 Sim4 clustering to Release 2
CG12120 2002-06-26 Blastp of sequenced clone
CG12120 2003-01-01 Sim4 clustering to Release 3
t 2008-04-29 Release 5.5 accounting
t 2008-08-15 Release 5.9 accounting
t 2008-12-18 5.12 accounting

Clone Sequence Records

RH41996.complete Sequence

2009 bp (2009 high quality bases) assembled on 2002-06-26

GenBank Submission: AY128492

> RH41996.complete
GAGTTTGAATTCTGCCTTCAAGCGCTCTAGAACAAATCAGCTGGCATTCT
GATTGGAATACTAACTATTTTTTGTTTTTTTGTTTGTTTACAACTCACAC
TTTGTTATCATCAACAGACGCGTCTTATTCTTGATTACCTTTTCTATTTT
GCGCCGAGTGCAAAGAGCTTTCCACTGCTTAAAACAAAAAAAAAAGAGTT
GTTCCCATCGCCGAACCCCGAACCCATTTTAGATCAACAGATCTCCAAGA
TGTCCTCCGGAAAGATCCTGCCACGTCGCCAGGCGGTGCCAGTGCTCTAC
ACCAGGGGCACCCATTACGAAGTTGGCTTCGATATGGGTCGCACATTTGG
GTCCATGATCAAGAACTTTCTGATCTTATCGAAGCCCCTCAACGAGACCT
ACTTGCCGCTCTACCAGTCGCCAAAAGGCAGGCAGATCTACAACGAGACC
CTGGGTTCGGTGAAGGACAGCTTCCCTCAATATGTGCGCGAACTGGAGGG
CGTGGCCGATGGTGCGGAGGTGGAATTCCATAAGCTATTTTTGCTGCATC
TGGATGAGATTCTACCGCAGGCATTGAAGCACCAACCACGTAGCAAAAAC
CAACCAACCGGCTGCTCCACCATCATTGTTAACCAAAAGAATTGCCGCCT
TTTGGGCCACACGGAGGATGCACTGACGGAGACCCTGAATCACTACTACT
TCGTGGTGGCACACATCATCAGTGACAAGCCGCAGGGCAAGTACAACGTT
AAGGAGGAGCACTTCATGTCCCTCTGCTACGCTGGCCATCTGCCCGGATA
CACTATGAGCCATAATCATCATGGATTGGTCTTCAGCATCAACACCATCA
GTGCGGAGCTCTTGCGCAGCGGCAAGACACCGCGACACTTCATCACCCGG
GCTCTGTTGGCCACCAGCAACGTGGACGATGCCTTCCGCGTGCTCAAGGA
TGCGGGAGTGGGTGCAGCGGATGCCTGTTCCATCAATTTCACCTTCCTGG
CGGATCCCCGCCAAATGTGCTACAATGTGGAGATGGCACCATCGCCGGAC
CGCAAGAATGAGTCTCATTTGAATATCAAGGAGGTGCCGCTGGGCGAGCA
CAACTACCATGTCAATCAATTCGATCGCATTCGGCAGGATCAGGCCAACG
ATCTGATGATTAGCTCGAGCATCTCCAGGATGCAAACATTTGGAGCGTAC
AATCCGCCGATGAGCGAGCAGGATGTGCGCCACATGCTGGGCGACGTGTC
CGGCGGAGTTTACTGCGTCTGGCGGGAGAACAACAGCTGCGACGAGGTGG
TCAAGACCATTGCCGTTGGCATCTTCGATCTCAGTGCCAGGACCATTTCC
CTGTATTCCGACAATCCCAGCGAGACGGAGCCACACTGCCGCCTGCCGCT
GCTCTACAAGTAGATGCGTAATCCGTATCGGTAGCCATGGCATTCATCGC
GTCTTTACTTAATCATTCTCAAATGACTATAACATAATATCAATCTATGA
TCTATATAACATAACTATAACATAATATCAATCTATGATCTATATATCAG
ATACAGGTATTGCCTATAATTAGGCCCTCTTTCAAAACAGTTTTCGAACT
GCGATACGATTTCAATATGCTCTACTTTTGATTTCGCCATATATGCGCAT
ATATATATATTTTTTTGTATACAATATTCATACAAATTATCAGTATATTA
ATATTTTAAAAGATTTTTTAAATCAAAAATAGTTGAAATGTTTTTTTTTC
TTACCTTAACTCAAAAGAAGTTCACTTTCCGTTCTTTGGCTCATTCTAAA
TTTAAAATTGTAACAAAAGTACATATATTTATATTGATATTTTACCTACT
CATTACTTTGTGTCATCGAATGTTTCTTTTTATGGTTGAAAAGTATATAA
TTATATACTACGGAATCTGATATAAATATATATATATATATATATATATA
TTAAAATGTTTTTAATAAATAAAAAATATTGTTTTATAAACATAAAAAAA
AAAAAAAAA

RH41996.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:45:06
Subject Length Description Subject Range Query Range Score Percent Strand
t-RA 2067 t-RA 76..2067 2..1993 9960 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:59:15
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 9109459..9110333 1993..1119 4345 99.8 Minus
chrX 22417052 chrX 9114758..9115093 337..2 1680 100 Minus
chrX 22417052 chrX 9110757..9110991 880..646 1145 99.1 Minus
chrX 22417052 chrX 9110577..9110698 1002..881 610 100 Minus
chrX 22417052 chrX 9110392..9110508 1118..1002 585 100 Minus
chrX 22417052 chrX 9111057..9111169 645..533 565 100 Minus
chrX 22417052 chrX 9113029..9113132 534..431 520 100 Minus
chrX 22417052 chrX 9113234..9113329 431..336 480 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:29:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:59:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9217654..9218529 1994..1119 4380 100 Minus
X 23542271 X 9222939..9223274 337..2 1680 100 Minus
X 23542271 X 9218953..9219187 880..646 1175 100 Minus
X 23542271 X 9218773..9218894 1002..881 610 100 Minus
X 23542271 X 9218588..9218704 1118..1002 585 100 Minus
X 23542271 X 9219253..9219365 645..533 565 100 Minus
X 23542271 X 9221210..9221313 534..431 520 100 Minus
X 23542271 X 9221415..9221510 431..336 480 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:18:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 9225752..9226627 1994..1119 4380 100 Minus
X 23527363 X 9231037..9231372 337..2 1680 100 Minus
X 23527363 X 9227051..9227285 880..646 1175 100 Minus
X 23527363 X 9226871..9226992 1002..881 610 100 Minus
X 23527363 X 9226686..9226802 1118..1002 585 100 Minus
X 23527363 X 9227351..9227463 645..533 565 100 Minus
X 23527363 X 9229308..9229411 534..431 520 100 Minus
X 23527363 X 9229513..9229608 431..336 480 100 Minus
Blast to na_te.dros performed 2019-03-16 19:59:14
Subject Length Description Subject Range Query Range Score Percent Strand
TAHRE 10463 TAHRE OSV 10463bp 6713..6852 1805..1942 119 57 Plus

RH41996.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:00:12 Download gff for RH41996.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 9109459..9110333 1119..1993 99 <- Minus
chrX 9110392..9110508 1002..1118 100 <- Minus
chrX 9110578..9110698 881..1001 100 <- Minus
chrX 9110757..9110991 646..880 99 <- Minus
chrX 9111057..9111167 535..645 100 <- Minus
chrX 9113029..9113132 431..534 100 <- Minus
chrX 9113235..9113328 337..430 100 <- Minus
chrX 9114759..9115093 1..336 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:46:32 Download gff for RH41996.complete
Subject Subject Range Query Range Percent Splice Strand
t-RA 1..1164 250..1413 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:19:11 Download gff for RH41996.complete
Subject Subject Range Query Range Percent Splice Strand
t-RA 1..1164 250..1413 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:37:02 Download gff for RH41996.complete
Subject Subject Range Query Range Percent Splice Strand
t-RA 1..1164 250..1413 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:10:14 Download gff for RH41996.complete
Subject Subject Range Query Range Percent Splice Strand
t-RA 1..1164 250..1413 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:48:38 Download gff for RH41996.complete
Subject Subject Range Query Range Percent Splice Strand
t-RA 1..1164 250..1413 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:44:26 Download gff for RH41996.complete
Subject Subject Range Query Range Percent Splice Strand
t-RA 1..1975 19..1993 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:19:11 Download gff for RH41996.complete
Subject Subject Range Query Range Percent Splice Strand
t-RA 1..1975 19..1993 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:37:02 Download gff for RH41996.complete
Subject Subject Range Query Range Percent Splice Strand
t-RA 1..1975 19..1993 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:10:14 Download gff for RH41996.complete
Subject Subject Range Query Range Percent Splice Strand
t-RA 1..1975 19..1993 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:38 Download gff for RH41996.complete
Subject Subject Range Query Range Percent Splice Strand
t-RA 1..1975 19..1993 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:00:12 Download gff for RH41996.complete
Subject Subject Range Query Range Percent Splice Strand
X 9217655..9218529 1119..1993 100 <- Minus
X 9218588..9218704 1002..1118 100 <- Minus
X 9218774..9218894 881..1001 100 <- Minus
X 9218953..9219187 646..880 100 <- Minus
X 9219253..9219363 535..645 100 <- Minus
X 9221210..9221313 431..534 100 <- Minus
X 9221416..9221509 337..430 100 <- Minus
X 9222940..9223274 1..336 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:00:12 Download gff for RH41996.complete
Subject Subject Range Query Range Percent Splice Strand
X 9217655..9218529 1119..1993 100 <- Minus
X 9218588..9218704 1002..1118 100 <- Minus
X 9218774..9218894 881..1001 100 <- Minus
X 9218953..9219187 646..880 100 <- Minus
X 9219253..9219363 535..645 100 <- Minus
X 9221210..9221313 431..534 100 <- Minus
X 9221416..9221509 337..430 100 <- Minus
X 9222940..9223274 1..336 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:00:12 Download gff for RH41996.complete
Subject Subject Range Query Range Percent Splice Strand
X 9217655..9218529 1119..1993 100 <- Minus
X 9218588..9218704 1002..1118 100 <- Minus
X 9218774..9218894 881..1001 100 <- Minus
X 9218953..9219187 646..880 100 <- Minus
X 9219253..9219363 535..645 100 <- Minus
X 9221210..9221313 431..534 100 <- Minus
X 9221416..9221509 337..430 100 <- Minus
X 9222940..9223274 1..336 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:37:02 Download gff for RH41996.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9111688..9112562 1119..1993 100 <- Minus
arm_X 9112621..9112737 1002..1118 100 <- Minus
arm_X 9112807..9112927 881..1001 100 <- Minus
arm_X 9112986..9113220 646..880 100 <- Minus
arm_X 9113286..9113396 535..645 100 <- Minus
arm_X 9115243..9115346 431..534 100 <- Minus
arm_X 9115449..9115542 337..430 100 <- Minus
arm_X 9116973..9117307 1..336 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:42:30 Download gff for RH41996.complete
Subject Subject Range Query Range Percent Splice Strand
X 9225753..9226627 1119..1993 100 <- Minus
X 9226686..9226802 1002..1118 100 <- Minus
X 9226872..9226992 881..1001 100 <- Minus
X 9227051..9227285 646..880 100 <- Minus
X 9227351..9227461 535..645 100 <- Minus
X 9229308..9229411 431..534 100 <- Minus
X 9229514..9229607 337..430 100 <- Minus
X 9231038..9231372 1..336 99   Minus

RH41996.pep Sequence

Translation from 249 to 1412

> RH41996.pep
MSSGKILPRRQAVPVLYTRGTHYEVGFDMGRTFGSMIKNFLILSKPLNET
YLPLYQSPKGRQIYNETLGSVKDSFPQYVRELEGVADGAEVEFHKLFLLH
LDEILPQALKHQPRSKNQPTGCSTIIVNQKNCRLLGHTEDALTETLNHYY
FVVAHIISDKPQGKYNVKEEHFMSLCYAGHLPGYTMSHNHHGLVFSINTI
SAELLRSGKTPRHFITRALLATSNVDDAFRVLKDAGVGAADACSINFTFL
ADPRQMCYNVEMAPSPDRKNESHLNIKEVPLGEHNYHVNQFDRIRQDQAN
DLMISSSISRMQTFGAYNPPMSEQDVRHMLGDVSGGVYCVWRENNSCDEV
VKTIAVGIFDLSARTISLYSDNPSETEPHCRLPLLYK*

RH41996.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:55:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19099-PA 387 GF19099-PA 1..387 1..387 2008 94.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:55:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18991-PA 387 GG18991-PA 1..387 1..387 2067 97.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:55:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12537-PA 387 GH12537-PA 1..387 1..387 1875 88.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:11:51
Subject Length Description Subject Range Query Range Score Percent Strand
t-PB 387 CG12120-PB 1..387 1..387 2052 100 Plus
t-PA 387 CG12120-PA 1..387 1..387 2052 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:55:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15530-PA 400 GI15530-PA 14..400 1..387 1744 84.2 Plus
Dmoj\GI15531-PA 353 GI15531-PA 18..353 9..387 1148 58.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:55:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18287-PA 215 GL18287-PA 1..215 173..387 1052 88.4 Plus
Dper\GL22418-PA 119 GL22418-PA 1..119 133..290 532 69.6 Plus
Dper\GL18286-PA 101 GL18286-PA 1..96 1..96 485 93.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:55:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11415-PA 376 GA11415-PA 1..376 1..376 1864 90.7 Plus
Dpse\GA28142-PA 332 GA28142-PA 41..332 96..387 1441 89.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:55:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22371-PA 387 GM22371-PA 1..387 1..387 2086 99.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:55:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16075-PA 387 GD16075-PA 1..387 1..387 2086 99.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:55:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14875-PA 400 GJ14875-PA 14..400 1..387 1874 88.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:55:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25797-PA 388 GK25797-PA 1..385 1..385 1893 89.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:55:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15464-PA 387 GE15464-PA 1..387 1..387 2082 99.2 Plus

RH41996.hyp Sequence

Translation from 249 to 1412

> RH41996.hyp
MSSGKILPRRQAVPVLYTRGTHYEVGFDMGRTFGSMIKNFLILSKPLNET
YLPLYQSPKGRQIYNETLGSVKDSFPQYVRELEGVADGAEVEFHKLFLLH
LDEILPQALKHQPRSKNQPTGCSTIIVNQKNCRLLGHTEDALTETLNHYY
FVVAHIISDKPQGKYNVKEEHFMSLCYAGHLPGYTMSHNHHGLVFSINTI
SAELLRSGKTPRHFITRALLATSNVDDAFRVLKDAGVGAADACSINFTFL
ADPRQMCYNVEMAPSPDRKNESHLNIKEVPLGEHNYHVNQFDRIRQDQAN
DLMISSSISRMQTFGAYNPPMSEQDVRHMLGDVSGGVYCVWRENNSCDEV
VKTIAVGIFDLSARTISLYSDNPSETEPHCRLPLLYK*

RH41996.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:22:43
Subject Length Description Subject Range Query Range Score Percent Strand
t-PB 387 CG12120-PB 1..387 1..387 2052 100 Plus
t-PA 387 CG12120-PA 1..387 1..387 2052 100 Plus