Clone RH42110 Report

Search the DGRC for RH42110

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:421
Well:10
Vector:pFlc-1
Associated Gene/TranscriptCG11123-RA
Protein status:RH42110.pep: gold
Preliminary Size:2041
Sequenced Size:2151

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11123 2002-01-01 Sim4 clustering to Release 2
CG11123 2002-03-21 Blastp of sequenced clone
CG11123 2003-01-01 Sim4 clustering to Release 3
CG11123 2008-04-29 Release 5.5 accounting
CG11123 2008-08-15 Release 5.9 accounting
CG11123 2008-12-18 5.12 accounting

Clone Sequence Records

RH42110.complete Sequence

2151 bp (2151 high quality bases) assembled on 2002-03-21

GenBank Submission: AY094923

> RH42110.complete
GCCTTTGGCTTGGTATTTTATTTTTACAGCGTGTTCTGGCGCACGTTGGA
AGTAGAATTTAGTTTTAATTATTATATTGAAGAGGAATGCAGGCCGAAGG
CGACTCAAGGCGAAAGCGGCCCAAGAAGAAGGGCAACCGCTTTATGCGGA
ACGCCAAGGGGTTCGCCAAGCAGGGGATATTCGGCCGGGGTACGCACATC
GACGACGAGCAGTTCAACTACTTCATCAACATTCTGGATGCTATGAAAGT
GGGATTCGAGGACGTAGAGGAGCGAGTCATCATGGCCAACAATGTGTTCG
AGCAGACCCACGATCAGGAGATCCATCTGGCCTCCAATCAGATCGTGTCC
AAGGCTCTGGAGTCGTTAGTGGGCTTCGTGGACGACGTGCAGTTGGAGCG
CTTTTTTAGCAAGTTTGGCGACAACCTCCGGCCCATGTGCTCCGATCGGT
TTGCCTCGCACGTCCTGCAGAAAATGCTGGAAATCGCCTTTTTGCGCGGA
GTGGGAAAATCTGCAGCCCAGGATACCAGCGATGCAGCTAGCGCCAACAA
AAAAGCTAAGCCGGATGCCGCTCAAGAGGAGGAGGAGTACAACCTGCAGG
CGGACTTCACAGATGATCACCGCGAGAAGTGCCGGCAGTTCGTTCTTCGC
ATATCAAAGTTCATGTTGAACAATCTGGAGGACTTCGTTTGGGACGCCTG
TGCCAGCCACATCATGCGCACAGCCATTCTGTGCCTGGTGGGCATGCACG
TTCCCAAAATCGCCTTCGAGAAAGGTGGGACTGAGATAGCCAAGCATAGG
AAGATGTACTCTGTGCCGGATGAGTGGCAGGAGGTCATGAAGGAGTTCCC
CCAGCGCCTGGAGATGTGGCCCCAGTTCGGCGACTTTCCCTACCAGGATC
ACTCTTCAAGTCTGCTGGGCGTCATCTGTTTGGCCCTCAGTGTCGTGGAC
AAAAGTATGCTCAAGCATTTTGCCAAGAAAATCCTGACGATCGGTCTGCT
GAAGTCGAGCGACGAGGACGAGGAGAAAATGGAATTGGACACCAAAATCG
AAATCAAGGACGAGGATGATGATAATGATGAAAAGGAGGATAAGAAGGCG
AAAGAAGCAGATGCCGACACTGAGAACAAGCAGGAAGAGCCAAAACTACC
CAAAGTTTTCCATCATCAAAGCTCAGTCATTCTGCTCGAAACGATTATGA
GCGTAGCGGGAGCCAAATTGATGATCCAGCTGTATGCGATGCTCTTCTGC
AACCGAATAGGTTACCTAGCTCGGCAGCCAGGAACGAACTTTTCAGTCCA
GCGTCTCCTTCAGCACATCAAAGAGGTGCCTGATTTCGAGTCCGTTTTCA
CCGAACTCCAGCCGCATGTGGAGGAGCTGCTGAAAATGGGATACACCGGC
GTCGTGTCCGCCCTCAGTGCCGCCTGCTTGCGACTGGCCACCAAGCAGTC
TCAGATGATAGCCGCTTTGCAGAGTGCCCTCCATGTCAGTGGCGACAAGG
AGAAATCGAAGCTTTTCCTTACATGTTTGATTAAGTTAAAGCCCTTTGAG
GTGGTGACCGGCGACGAGTCGGCCTTTGTTCATCTGCACGGTTCGCTTAT
TACTCAACACCTGCTGCAGTTCAACAAGCCAATCTTTCTGGTCAACTGTA
TCCTCGATCTGCCCGCCACCCAACTGGCTCAGGTCTTCAACACACCCAAT
GGCTCACACATCGTTGACGCCTTCATGCAGAGCAAGTTCATCGGCGAGAA
GTCCCGCGAGCGTCTGATCCGCCAGTTGGATGGCTTCTACGTAGACTTGG
CCATCACTCGACATGGTTCCCGCGTCTTCGAACAGTGCTTTAAGGCCGCC
CAAGATGCGCAGAAACTGCGCATGGCCAAGGAACTGTTTTCCAAGGCCAA
TATGCTGAAAGGCTCACCACACGGTCGGATCATCTACACAAAATACCGCC
TGGACACGTACAAGCTTTCACCTACGCAATGGCAGGAAAGTTTGTCCAAG
CATCTGGACGCCGAGCAGACAAAGGAGACGAAGCGGAAAACGGCCAAGAC
AGCTGTCGAAGCTTTTAAGGACATACTTAGCTAGTATATAGATTGTTTAA
ACTAATAAACCTTATCTAAACTATTGTTAGAGGCCAAAAAAAAAAAAAAA
A

RH42110.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:19:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG11123-RA 2316 CG11123-RA 71..2202 2..2133 10645 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:33:25
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3328379..3330237 275..2133 9280 99.9 Plus
chr2R 21145070 chr2R 3328048..3328322 2..276 1375 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:29:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:33:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7441025..7442883 275..2133 9280 99.9 Plus
2R 25286936 2R 7440694..7440968 2..276 1375 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:48:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7442224..7444082 275..2133 9280 99.9 Plus
2R 25260384 2R 7441893..7442167 2..276 1375 100 Plus
Blast to na_te.dros performed on 2019-03-16 14:33:23 has no hits.

RH42110.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:34:36 Download gff for RH42110.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3328047..3328322 1..276 99 -> Plus
chr2R 3328381..3330239 277..2135 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:46:34 Download gff for RH42110.complete
Subject Subject Range Query Range Percent Splice Strand
CG11123-RA 1..1998 87..2084 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:24:32 Download gff for RH42110.complete
Subject Subject Range Query Range Percent Splice Strand
CG11123-RA 1..1998 87..2084 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:56:05 Download gff for RH42110.complete
Subject Subject Range Query Range Percent Splice Strand
CG11123-RA 1..1998 87..2084 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:00:21 Download gff for RH42110.complete
Subject Subject Range Query Range Percent Splice Strand
CG11123-RA 1..1998 87..2084 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:28:39 Download gff for RH42110.complete
Subject Subject Range Query Range Percent Splice Strand
CG11123-RA 1..1998 87..2084 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:51:13 Download gff for RH42110.complete
Subject Subject Range Query Range Percent Splice Strand
CG11123-RA 2..2135 2..2135 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:24:32 Download gff for RH42110.complete
Subject Subject Range Query Range Percent Splice Strand
CG11123-RA 2..2135 2..2135 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:56:05 Download gff for RH42110.complete
Subject Subject Range Query Range Percent Splice Strand
CG11123-RA 1..2122 14..2135 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:00:22 Download gff for RH42110.complete
Subject Subject Range Query Range Percent Splice Strand
CG11123-RA 2..2135 2..2135 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:28:39 Download gff for RH42110.complete
Subject Subject Range Query Range Percent Splice Strand
CG11123-RA 1..2122 14..2135 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:34:36 Download gff for RH42110.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7440693..7440968 1..276 99 -> Plus
2R 7441027..7442885 277..2135 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:34:36 Download gff for RH42110.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7440693..7440968 1..276 99 -> Plus
2R 7441027..7442885 277..2135 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:34:36 Download gff for RH42110.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7440693..7440968 1..276 99 -> Plus
2R 7441027..7442885 277..2135 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:56:05 Download gff for RH42110.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3328198..3328473 1..276 99 -> Plus
arm_2R 3328532..3330390 277..2135 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:33:23 Download gff for RH42110.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7441892..7442167 1..276 99 -> Plus
2R 7442226..7444084 277..2135 99   Plus

RH42110.pep Sequence

Translation from 86 to 2083

> RH42110.pep
MQAEGDSRRKRPKKKGNRFMRNAKGFAKQGIFGRGTHIDDEQFNYFINIL
DAMKVGFEDVEERVIMANNVFEQTHDQEIHLASNQIVSKALESLVGFVDD
VQLERFFSKFGDNLRPMCSDRFASHVLQKMLEIAFLRGVGKSAAQDTSDA
ASANKKAKPDAAQEEEEYNLQADFTDDHREKCRQFVLRISKFMLNNLEDF
VWDACASHIMRTAILCLVGMHVPKIAFEKGGTEIAKHRKMYSVPDEWQEV
MKEFPQRLEMWPQFGDFPYQDHSSSLLGVICLALSVVDKSMLKHFAKKIL
TIGLLKSSDEDEEKMELDTKIEIKDEDDDNDEKEDKKAKEADADTENKQE
EPKLPKVFHHQSSVILLETIMSVAGAKLMIQLYAMLFCNRIGYLARQPGT
NFSVQRLLQHIKEVPDFESVFTELQPHVEELLKMGYTGVVSALSAACLRL
ATKQSQMIAALQSALHVSGDKEKSKLFLTCLIKLKPFEVVTGDESAFVHL
HGSLITQHLLQFNKPIFLVNCILDLPATQLAQVFNTPNGSHIVDAFMQSK
FIGEKSRERLIRQLDGFYVDLAITRHGSRVFEQCFKAAQDAQKLRMAKEL
FSKANMLKGSPHGRIIYTKYRLDTYKLSPTQWQESLSKHLDAEQTKETKR
KTAKTAVEAFKDILS*

RH42110.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:18:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12956-PA 665 GF12956-PA 1..665 1..665 2916 79.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:18:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23278-PA 663 GG23278-PA 1..663 1..665 3295 92.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:18:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21165-PA 666 GH21165-PA 1..666 1..665 2771 78.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:42:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG11123-PA 665 CG11123-PA 1..665 1..665 3417 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:18:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18760-PA 669 GI18760-PA 17..669 17..665 2528 72.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:18:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11166-PA 661 GL11166-PA 1..661 1..665 2778 79.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:18:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10772-PA 661 GA10772-PA 1..661 1..665 2777 79.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:18:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20954-PA 663 GM20954-PA 1..663 1..665 3456 96.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:18:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10479-PA 664 GD10479-PA 1..664 1..665 3484 97.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:18:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21784-PA 668 GJ21784-PA 19..668 19..665 2553 73.3 Plus
Dvir\GJ16352-PA 58 GJ16352-PA 1..58 549..606 280 91.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:18:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21319-PA 661 GK21319-PA 1..661 1..665 2549 73.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:18:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19125-PA 662 GE19125-PA 1..662 1..665 3334 94.1 Plus

RH42110.hyp Sequence

Translation from 86 to 2083

> RH42110.hyp
MQAEGDSRRKRPKKKGNRFMRNAKGFAKQGIFGRGTHIDDEQFNYFINIL
DAMKVGFEDVEERVIMANNVFEQTHDQEIHLASNQIVSKALESLVGFVDD
VQLERFFSKFGDNLRPMCSDRFASHVLQKMLEIAFLRGVGKSAAQDTSDA
ASANKKAKPDAAQEEEEYNLQADFTDDHREKCRQFVLRISKFMLNNLEDF
VWDACASHIMRTAILCLVGMHVPKIAFEKGGTEIAKHRKMYSVPDEWQEV
MKEFPQRLEMWPQFGDFPYQDHSSSLLGVICLALSVVDKSMLKHFAKKIL
TIGLLKSSDEDEEKMELDTKIEIKDEDDDNDEKEDKKAKEADADTENKQE
EPKLPKVFHHQSSVILLETIMSVAGAKLMIQLYAMLFCNRIGYLARQPGT
NFSVQRLLQHIKEVPDFESVFTELQPHVEELLKMGYTGVVSALSAACLRL
ATKQSQMIAALQSALHVSGDKEKSKLFLTCLIKLKPFEVVTGDESAFVHL
HGSLITQHLLQFNKPIFLVNCILDLPATQLAQVFNTPNGSHIVDAFMQSK
FIGEKSRERLIRQLDGFYVDLAITRHGSRVFEQCFKAAQDAQKLRMAKEL
FSKANMLKGSPHGRIIYTKYRLDTYKLSPTQWQESLSKHLDAEQTKETKR
KTAKTAVEAFKDILS*

RH42110.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG11123-PA 665 CG11123-PA 1..665 1..665 3417 100 Plus