BDGP Sequence Production Resources |
Search the DGRC for RH42520
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 425 |
Well: | 20 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG9399-RA |
Protein status: | RH42520.pep: gold |
Preliminary Size: | 697 |
Sequenced Size: | 1025 |
Gene | Date | Evidence |
---|---|---|
CG9399 | 2002-01-01 | Sim4 clustering to Release 2 |
CG9399 | 2002-04-26 | Blastp of sequenced clone |
CG9399 | 2003-01-01 | Sim4 clustering to Release 3 |
CG9399 | 2008-04-29 | Release 5.5 accounting |
CG9399 | 2008-08-15 | Release 5.9 accounting |
CG9399 | 2008-12-18 | 5.12 accounting |
1025 bp (1025 high quality bases) assembled on 2002-04-26
GenBank Submission: AY113593
> RH42520.complete GATTGGTAGCGATGCATTCGATTCAGACACATTTGCTTCCGTCAACATTT TGCTGCGGAAATTGCGGAAATTGGCACACTCTCCTCAAGGTCAAGGATGT TGTGCGATAGCTAATGAACCTGTGATCGTGCAAAAACCTGTTCCTAAAGA TGAATGCATGATTTTTGCACTTTTTAGAAAGTCAACCAACGAGTTTGGAC GCATAAATTATCATCACTGCAACCCGTGGAATTTTTTCGCACAAATAGCA ACAACAACAAAATGTCGTCCACAGCCGTTCAGCCACCGCCGCCCGTTCCC CCGCCGCCACCATCGGCCGTCCCTTCCGCCGGAAAGGGCATCCACTCCAA GCTGTACAACGGGATGATTGGCGCCGCCGACAAATTTGTGCCCGCCAAGC TGCGGCCACTGTGGATGCATCCAGCTGGTCCCAAGACGATATTCTTTTGG GCACCCGTCTTCAAATGGGGTCTCGTTGCCGCCGGCCTGAGTGACTTGGC CCGACCGGCCGACACCATCTCCGTGTCTGGATGCGCCGCCCTGGCTGCCA CGGGCATCATCTGGTCGCGTTACTCGCTGGTGATCATACCCAAGAACTAC AGCCTGTTCGCCGTGAATCTCTTCGTGGGCATCACGCAGGTGGTGCAGCT GGCACGGGCCTACCACTACCACCAGAGTCAGGAGAAGCTGAAGCAGGAGC AGCAGCAGCCGGCGGTGCAAAATTAGATACATATCGAATCGAATACCGGT GCTGTCCCCTTTATATAGACTTTAATCGAACTTTTATGTACATACAAATC CCACAACGCGCAACGTAAACGAAAGGATTAAGAGGAAGCTGTACTAGCAG ATCGCGAAACTGCGTTTTACAACCTGTTAACCATTATTATTTATGGTTCA CCGCCTTATCGACGTGATTCGTATTACTTAAGTTGTAACTGTGGAGGCTT TGCGTATAGTTAAATCGAAACGAGAATGATAAATCAATACATTTTAAGAC TTTAGTCACCAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG9399-RB | 1237 | CG9399-RB | 19..1026 | 2..1009 | 5040 | 100 | Plus |
CG9399.k | 1219 | CG9399.k | 1..1008 | 2..1009 | 5040 | 100 | Plus |
CG9399.j | 2010 | CG9399.j | 780..1603 | 186..1009 | 4120 | 100 | Plus |
CG9399.j | 2010 | CG9399.j | 389..572 | 2..185 | 920 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 5398061..5398602 | 1009..468 | 2710 | 100 | Minus |
chr3R | 27901430 | chr3R | 5399199..5399442 | 429..186 | 1220 | 100 | Minus |
chr3R | 27901430 | chr3R | 5399650..5399833 | 185..2 | 920 | 100 | Minus |
chr3R | 27901430 | chr3R | 5396438..5396508 | 627..557 | 250 | 90.1 | Minus |
chr3R | 27901430 | chr3R | 5399095..5399137 | 469..427 | 215 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 9572214..9572755 | 1009..468 | 2710 | 100 | Minus |
3R | 32079331 | 3R | 9573352..9573595 | 429..186 | 1220 | 100 | Minus |
3R | 32079331 | 3R | 9573803..9573986 | 185..2 | 920 | 100 | Minus |
3R | 32079331 | 3R | 9570591..9570661 | 627..557 | 250 | 90.1 | Minus |
3R | 32079331 | 3R | 9573248..9573290 | 469..427 | 215 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 9313045..9313586 | 1009..468 | 2710 | 100 | Minus |
3R | 31820162 | 3R | 9314183..9314426 | 429..186 | 1220 | 100 | Minus |
3R | 31820162 | 3R | 9314634..9314817 | 185..2 | 920 | 100 | Minus |
3R | 31820162 | 3R | 9311422..9311492 | 627..557 | 250 | 90.1 | Minus |
3R | 31820162 | 3R | 9314079..9314121 | 469..427 | 215 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 5399201..5399442 | 186..427 | 100 | <- | Minus |
chr3R | 5399650..5399833 | 1..185 | 99 | Minus | |
chr3R | 5399096..5399136 | 428..468 | 100 | <- | Minus |
chr3R | 5398060..5398601 | 469..1010 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9399-RA | 1..465 | 262..726 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9399-RC | 1..465 | 262..726 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9399-RB | 1..465 | 262..726 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9399-RA | 1..465 | 262..726 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9399-RB | 1..465 | 262..726 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9399-RB | 1..1008 | 2..1010 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9399-RB | 1..1008 | 2..1009 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9399-RB | 1..1008 | 2..1009 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9399-RB | 1..1008 | 2..1010 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9399-RB | 1..1008 | 2..1009 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9572213..9572754 | 469..1010 | 99 | <- | Minus |
3R | 9573249..9573289 | 428..468 | 100 | <- | Minus |
3R | 9573354..9573595 | 186..427 | 100 | <- | Minus |
3R | 9573803..9573986 | 1..185 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9572213..9572754 | 469..1010 | 99 | <- | Minus |
3R | 9573249..9573289 | 428..468 | 100 | <- | Minus |
3R | 9573354..9573595 | 186..427 | 100 | <- | Minus |
3R | 9573803..9573986 | 1..185 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9572213..9572754 | 469..1010 | 99 | <- | Minus |
3R | 9573249..9573289 | 428..468 | 100 | <- | Minus |
3R | 9573354..9573595 | 186..427 | 100 | <- | Minus |
3R | 9573803..9573986 | 1..185 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 5397935..5398476 | 469..1010 | 99 | <- | Minus |
arm_3R | 5398971..5399011 | 428..468 | 100 | <- | Minus |
arm_3R | 5399076..5399317 | 186..427 | 100 | <- | Minus |
arm_3R | 5399525..5399708 | 1..185 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9313044..9313585 | 469..1010 | 99 | <- | Minus |
3R | 9314080..9314120 | 428..468 | 100 | <- | Minus |
3R | 9314185..9314426 | 186..427 | 100 | <- | Minus |
3R | 9314634..9314817 | 1..185 | 99 | Minus |
Translation from 261 to 725
> RH42520.pep MSSTAVQPPPPVPPPPPSAVPSAGKGIHSKLYNGMIGAADKFVPAKLRPL WMHPAGPKTIFFWAPVFKWGLVAAGLSDLARPADTISVSGCAALAATGII WSRYSLVIIPKNYSLFAVNLFVGITQVVQLARAYHYHQSQEKLKQEQQQP AVQN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16532-PA | 156 | GF16532-PA | 26..154 | 24..152 | 605 | 86.8 | Plus |
Dana\GF16533-PA | 150 | GF16533-PA | 7..146 | 14..153 | 553 | 71.4 | Plus |
Dana\GF14537-PA | 140 | GF14537-PA | 2..123 | 22..142 | 344 | 55.7 | Plus |
Dana\GF15117-PA | 143 | GF15117-PA | 6..122 | 30..148 | 262 | 43.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17356-PA | 154 | GG17356-PA | 1..154 | 1..154 | 776 | 96.8 | Plus |
Dere\GG17358-PA | 152 | GG17358-PA | 18..149 | 24..153 | 502 | 68.9 | Plus |
Dere\GG21765-PA | 140 | GG21765-PA | 2..123 | 22..142 | 337 | 55.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19299-PA | 156 | GH19299-PA | 25..138 | 24..137 | 562 | 89.5 | Plus |
Dgri\GH13770-PA | 140 | GH13770-PA | 2..133 | 22..150 | 320 | 50.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG9399-PD | 154 | CG9399-PD | 1..154 | 1..154 | 813 | 100 | Plus |
CG9399-PA | 154 | CG9399-PA | 1..154 | 1..154 | 813 | 100 | Plus |
CG9399-PB | 154 | CG9399-PB | 1..154 | 1..154 | 813 | 100 | Plus |
CG9399-PE | 120 | CG9399-PE | 1..120 | 35..154 | 627 | 100 | Plus |
CG9396-PA | 151 | CG9396-PA | 5..148 | 11..153 | 518 | 66.7 | Plus |
CG32832-PB | 140 | CG32832-PB | 2..107 | 22..126 | 338 | 61.3 | Plus |
CG32832-PA | 140 | CG32832-PA | 2..107 | 22..126 | 338 | 61.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23515-PA | 154 | GI23515-PA | 23..148 | 24..149 | 577 | 81 | Plus |
Dmoj\GI17910-PA | 140 | GI17910-PA | 2..123 | 22..142 | 335 | 54.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21494-PA | 155 | GL21494-PA | 1..149 | 1..149 | 596 | 84.6 | Plus |
Dper\GL21495-PA | 149 | GL21495-PA | 1..146 | 12..152 | 515 | 68.5 | Plus |
Dper\GL19324-PA | 140 | GL19324-PA | 2..124 | 22..145 | 349 | 57.6 | Plus |
Dper\GL16074-PA | 141 | GL16074-PA | 3..110 | 27..133 | 234 | 47.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA26297-PA | 155 | GA26297-PA | 1..149 | 1..149 | 596 | 84.6 | Plus |
Dpse\GA26298-PA | 149 | GA26298-PA | 1..146 | 12..152 | 515 | 68.5 | Plus |
Dpse\GA25919-PA | 140 | GA25919-PA | 2..124 | 22..145 | 349 | 57.6 | Plus |
Dpse\GA26115-PA | 141 | GA26115-PA | 3..110 | 27..133 | 234 | 47.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26242-PA | 154 | GM26242-PA | 1..154 | 1..154 | 793 | 99.4 | Plus |
Dsec\GM26243-PA | 151 | GM26243-PA | 16..148 | 22..153 | 493 | 69.2 | Plus |
Dsec\GM17149-PA | 140 | GM17149-PA | 2..123 | 22..142 | 336 | 54.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20782-PA | 154 | GD20782-PA | 1..154 | 1..154 | 786 | 98.7 | Plus |
Dsim\GD20783-PA | 151 | GD20783-PA | 16..148 | 22..153 | 502 | 69.9 | Plus |
Dsim\GD21889-PA | 140 | GD21889-PA | 2..123 | 22..142 | 336 | 54.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10267-PA | 157 | GJ10267-PA | 1..155 | 1..152 | 614 | 82.6 | Plus |
Dvir\GJ17418-PA | 141 | GJ17418-PA | 2..123 | 22..142 | 325 | 54.1 | Plus |
Dvir\GJ17419-PA | 126 | GJ17419-PA | 2..123 | 22..142 | 313 | 52.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11250-PA | 154 | GK11250-PA | 21..146 | 24..149 | 621 | 92.1 | Plus |
Dwil\GK11251-PA | 141 | GK11251-PA | 12..135 | 26..149 | 519 | 75.8 | Plus |
Dwil\GK18148-PA | 91 | GK18148-PA | 6..87 | 26..106 | 276 | 63.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24761-PA | 152 | GE24761-PA | 1..152 | 1..154 | 756 | 96.1 | Plus |
Dyak\GE24762-PA | 152 | GE24762-PA | 18..149 | 24..153 | 502 | 68.9 | Plus |
Dyak\GE13155-PA | 140 | GE13155-PA | 2..123 | 22..142 | 345 | 54.9 | Plus |
Translation from 261 to 725
> RH42520.hyp MSSTAVQPPPPVPPPPPSAVPSAGKGIHSKLYNGMIGAADKFVPAKLRPL WMHPAGPKTIFFWAPVFKWGLVAAGLSDLARPADTISVSGCAALAATGII WSRYSLVIIPKNYSLFAVNLFVGITQVVQLARAYHYHQSQEKLKQEQQQP AVQN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG9399-PD | 154 | CG9399-PD | 1..154 | 1..154 | 813 | 100 | Plus |
CG9399-PA | 154 | CG9399-PA | 1..154 | 1..154 | 813 | 100 | Plus |
CG9399-PB | 154 | CG9399-PB | 1..154 | 1..154 | 813 | 100 | Plus |
CG9399-PE | 120 | CG9399-PE | 1..120 | 35..154 | 627 | 100 | Plus |
CG9396-PA | 151 | CG9396-PA | 5..148 | 11..153 | 518 | 66.7 | Plus |