![]() | BDGP Sequence Production Resources |
Search the DGRC for RH42690
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 426 |
Well: | 90 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG3198-RA |
Protein status: | RH42690.pep: gold |
Preliminary Size: | 1516 |
Sequenced Size: | 1853 |
Gene | Date | Evidence |
---|---|---|
CG3198 | 2002-01-01 | Sim4 clustering to Release 2 |
CG3198 | 2002-06-26 | Blastp of sequenced clone |
CG3198 | 2003-01-01 | Sim4 clustering to Release 3 |
CG3198 | 2008-04-29 | Release 5.5 accounting |
CG3198 | 2008-08-15 | Release 5.9 accounting |
CG3198 | 2008-12-18 | 5.12 accounting |
1853 bp (1853 high quality bases) assembled on 2002-06-26
GenBank Submission: AY128494
> RH42690.complete GATTCCGAAATAATCGATACCACGCGAATTTCGTGAAATAATTTTATTGA TTCTATTTTGGCTAATTTTTTGGCTAAACAGCAGGAGCACAGCGTTGCAC GTGTGTTCACCTGTTCGCCGGCACCGTTGTGGCCATAGAAGTCGGTGTGG TACCATTGGATTCATTTGATTCACTGGGACCACCGCCCCCTTCGGAGTTT TGTCCCCACAAATTGCGAAGGAGCCCCGGAAAATGGTGGACGCCGCCAGG CAGATGCTCGACGAGCTGATGGGCAGGAATCGCAACCTGCATCCCTCGGA GGCGGGCGCCAAGGTCAATTGGGAGGATCCGGAGTTCTGTCAGTTCTACA ACGTTAAGTTCTGTCCGCACGATCTATTCATAAATACGCGCGCAGATCTG GGCCCCTGTGCCCGCATCCACGACGAGGAAGCCCGACATCTCTACGAGGA TGCTCGACCCTCGCAGCGGAAGCGTCAGTACGAGGATGAATTCCTGCGCT TTTGCAATGTTATGCTGCACGATGTGGATCGAAAGATCCAGAAGGGAAAA CAGCGTTTGCTGCTAATGCAAAGGGATCAGCCCAATGTACCGGCGCCACT GAGCAGGCACCAGGAGCAGCTTGCGAATCTGACGGCCCGGATCAATAAGC TGCTCTCTGAGGCAGAGGAAGCCGGCATTCGGGGTGACGTGGACCAGGCC CAAGATCTAATGACCGTGTGCGAGGAGCTCAAGGAGGAGAAGGAACAGTT GGTACAGCAATACGAGGCCCATCACAAGGCCATCAGCAGCATCAGCCTGA CCAAGTCAGCGGAGGACGAGCTGCAGCATCACCCGCGCAGCAGTCCGGTC ACAAATCCCAGCGAAGAAAGTCCAACTACTCCTCTTCCAGCCGCCACCAC GCTAGATGAAGCGCCGGATGCAGCTCCAAGTTCCGCACAAGCAGCTGTCA CAACGACTGACGATGCCGGTGAAGCAGCTGGTGCAGCCAGCGAGGACAAA ACGTCAGAGAAGACGGATAGCAAGGCGGCTGGCTGGTCGCATGATGCCAT GCCCGAGAAACAAATGAAGGTGTGCGAAATCTGTGGCGCTTTCCTGATAG TCGGCGATGCACAGCAGCGGATCGAGGACCATTTGATGGGTAAACAGCAT CTGGGCTACTCCAAACTGCGCAACGCCGTCGCCGAGATCAACGAGGCGCG ACAGAAGGAGCGCGAGCAGGAGGAACGACGTCGACGTGAGGGTCGAGTGC AGCGCTTCCACTCCTACGATAGCAGACGCGAGCCACGCAGTGAGTACCGC GAGCGAAGTCGCGACTATGTTCAGAATCGCCAGCCCTCGGATCGACGTCA CCATCACCATAAATCGCACCACAGCTCCCATCACTCGTATTCGCGCAGTG GCGGTGGTGGCGGCGGTGTAGGAGTTGGCGGCGGAGGAGGTGGTGGAAGC AGTCGGAGCAACCGGAGCCATCATAATCACAACCATAATCACTACCGCCA TGACAGCCGCGAGCGACATTGCCGCAGCCGGAGTCGCAGTCGCTACTAGA GACCAAAAAAAAAAAAGAAAAAGAAAAAGAAAAGATAAACACAATAGAAA CCAAGTGAATAGCAAACCAAGAACACAAGTAAATAATCCGAAAGTCCGGA GCACTTCCAGTTTCCAAAGCCCCATACCGCAAGTGTACAACAACTAAATA TGATCAAGTTCAAAACGAACCCAATCTCTCGACCATCTGCGATCTTCAGT CTTCGTCTTATGTGGTTCGCAAATCAGCAATTCGCAATCCGTAAGCACCA GCTGCCGTGGCCACGGGCGGCAGCATCGAGGTATCCCAAAAAAAAAAAAA AAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 6564790..6565740 | 1278..328 | 4665 | 99.4 | Minus |
chrX | 22417052 | chrX | 6563868..6564349 | 1837..1353 | 2315 | 99 | Minus |
chrX | 22417052 | chrX | 6565805..6566137 | 334..2 | 1635 | 99.4 | Minus |
chrX | 22417052 | chrX | 6564431..6564505 | 1352..1278 | 360 | 98.7 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 6672620..6673570 | 1278..328 | 4740 | 99.9 | Minus |
X | 23542271 | X | 6671679..6672179 | 1853..1353 | 2475 | 99.6 | Minus |
X | 23542271 | X | 6673637..6673969 | 334..2 | 1665 | 100 | Minus |
X | 23542271 | X | 6672262..6672336 | 1352..1278 | 375 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 6680718..6681668 | 1278..328 | 4740 | 99.8 | Minus |
X | 23527363 | X | 6679777..6680277 | 1853..1353 | 2475 | 99.6 | Minus |
X | 23527363 | X | 6681735..6682067 | 334..2 | 1665 | 100 | Minus |
X | 23527363 | X | 6680360..6680434 | 1352..1278 | 375 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
P-element | 2907 | P-element PPI251 2907bp AKA(V01520,X69493) Derived from X06779 (g58305) (Rel. 49, Last updated, Version 8). | 2050..2112 | 1615..1556 | 136 | 73 | Minus |
TAHRE | 10463 | TAHRE OSV 10463bp | 7690..7771 | 1558..1632 | 131 | 69.5 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 6564431..6564504 | 1279..1352 | 98 | <- | Minus |
chrX | 6564790..6565733 | 335..1278 | 99 | <- | Minus |
chrX | 6565805..6566137 | 1..334 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3198-RA | 1..1317 | 233..1549 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3198-RA | 1..1317 | 233..1549 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3198-RA | 1..1317 | 233..1549 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3198-RA | 1..1317 | 233..1549 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3198-RA | 1..1317 | 233..1549 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3198-RA | 1..1836 | 2..1837 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3198-RA | 1..1836 | 2..1837 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3198-RA | 4..1840 | 1..1837 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3198-RA | 1..1836 | 2..1837 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3198-RA | 4..1840 | 1..1837 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 6671695..6672179 | 1353..1837 | 100 | <- | Minus |
X | 6672262..6672335 | 1279..1352 | 100 | <- | Minus |
X | 6672620..6673563 | 335..1278 | 100 | <- | Minus |
X | 6673637..6673969 | 1..334 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 6671695..6672179 | 1353..1837 | 100 | <- | Minus |
X | 6672262..6672335 | 1279..1352 | 100 | <- | Minus |
X | 6672620..6673563 | 335..1278 | 100 | <- | Minus |
X | 6673637..6673969 | 1..334 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 6671695..6672179 | 1353..1837 | 100 | <- | Minus |
X | 6672262..6672335 | 1279..1352 | 100 | <- | Minus |
X | 6672620..6673563 | 335..1278 | 100 | <- | Minus |
X | 6673637..6673969 | 1..334 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 6565728..6566212 | 1353..1837 | 100 | <- | Minus |
arm_X | 6566295..6566368 | 1279..1352 | 100 | <- | Minus |
arm_X | 6566653..6567596 | 335..1278 | 100 | <- | Minus |
arm_X | 6567670..6568002 | 1..334 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 6679793..6680277 | 1353..1837 | 100 | <- | Minus |
X | 6680360..6680433 | 1279..1352 | 100 | <- | Minus |
X | 6680718..6681661 | 335..1278 | 100 | <- | Minus |
X | 6681735..6682067 | 1..334 | 99 | Minus |
Translation from 232 to 1548
> RH42690.pep MVDAARQMLDELMGRNRNLHPSEAGAKVNWEDPEFCQFYNVKFCPHDLFI NTRADLGPCARIHDEEARHLYEDARPSQRKRQYEDEFLRFCNVMLHDVDR KIQKGKQRLLLMQRDQPNVPAPLSRHQEQLANLTARINKLLSEAEEAGIR GDVDQAQDLMTVCEELKEEKEQLVQQYEAHHKAISSISLTKSAEDELQHH PRSSPVTNPSEESPTTPLPAATTLDEAPDAAPSSAQAAVTTTDDAGEAAG AASEDKTSEKTDSKAAGWSHDAMPEKQMKVCEICGAFLIVGDAQQRIEDH LMGKQHLGYSKLRNAVAEINEARQKEREQEERRRREGRVQRFHSYDSRRE PRSEYRERSRDYVQNRQPSDRRHHHHKSHHSSHHSYSRSGGGGGGVGVGG GGGGGSSRSNRSHHNHNHNHYRHDSRERHCRSRSRSRY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21898-PA | 450 | GF21898-PA | 1..379 | 1..370 | 1271 | 71.8 | Plus |
Dana\GF10538-PA | 415 | GF10538-PA | 4..171 | 2..177 | 214 | 31.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17666-PA | 447 | GG17666-PA | 1..371 | 1..370 | 1598 | 90.1 | Plus |
Dere\GG13623-PA | 413 | GG13623-PA | 4..171 | 2..177 | 223 | 32.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24239-PA | 457 | GH24239-PA | 1..401 | 1..370 | 1182 | 68 | Plus |
Dgri\GH16088-PA | 432 | GH16088-PA | 11..179 | 2..177 | 232 | 32.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG3198-PA | 438 | CG3198-PA | 1..438 | 1..438 | 2330 | 100 | Plus |
CG7564-PD | 420 | CG7564-PD | 12..178 | 3..177 | 238 | 32.6 | Plus |
CG7564-PB | 420 | CG7564-PB | 12..178 | 3..177 | 238 | 32.6 | Plus |
CG7564-PC | 420 | CG7564-PC | 12..178 | 3..177 | 238 | 32.6 | Plus |
CG7564-PA | 420 | CG7564-PA | 12..178 | 3..177 | 238 | 32.6 | Plus |
CG7564-PD | 420 | CG7564-PD | 150..361 | 244..438 | 158 | 25.2 | Plus |
CG7564-PB | 420 | CG7564-PB | 150..361 | 244..438 | 158 | 25.2 | Plus |
CG7564-PC | 420 | CG7564-PC | 150..361 | 244..438 | 158 | 25.2 | Plus |
CG7564-PA | 420 | CG7564-PA | 150..361 | 244..438 | 158 | 25.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21435-PA | 442 | GI21435-PA | 1..392 | 1..372 | 1151 | 66.2 | Plus |
Dmoj\GI12351-PA | 422 | GI12351-PA | 11..179 | 2..177 | 228 | 31.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13371-PA | 273 | GL13371-PA | 1..186 | 1..187 | 865 | 85.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA16595-PA | 443 | GA16595-PA | 1..429 | 1..424 | 1214 | 67 | Plus |
Dpse\GA20443-PA | 442 | GA20443-PA | 11..178 | 2..177 | 219 | 31.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12566-PA | 437 | GM12566-PA | 1..402 | 1..402 | 2088 | 96 | Plus |
Dsec\GM25708-PA | 412 | GM25708-PA | 4..171 | 2..177 | 228 | 32.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16187-PA | 349 | GD16187-PA | 1..349 | 1..349 | 1534 | 95.7 | Plus |
Dsim\GD14714-PA | 210 | GD14714-PA | 4..171 | 2..177 | 224 | 32.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16453-PA | 370 | GJ16453-PA | 1..370 | 1..349 | 1060 | 66.9 | Plus |
Dvir\GJ12244-PA | 361 | GJ12244-PA | 4..172 | 2..177 | 227 | 32.4 | Plus |
Translation from 232 to 1548
> RH42690.hyp MVDAARQMLDELMGRNRNLHPSEAGAKVNWEDPEFCQFYNVKFCPHDLFI NTRADLGPCARIHDEEARHLYEDARPSQRKRQYEDEFLRFCNVMLHDVDR KIQKGKQRLLLMQRDQPNVPAPLSRHQEQLANLTARINKLLSEAEEAGIR GDVDQAQDLMTVCEELKEEKEQLVQQYEAHHKAISSISLTKSAEDELQHH PRSSPVTNPSEESPTTPLPAATTLDEAPDAAPSSAQAAVTTTDDAGEAAG AASEDKTSEKTDSKAAGWSHDAMPEKQMKVCEICGAFLIVGDAQQRIEDH LMGKQHLGYSKLRNAVAEINEARQKEREQEERRRREGRVQRFHSYDSRRE PRSEYRERSRDYVQNRQPSDRRHHHHKSHHSSHHSYSRSGGGGGGVGVGG GGGGGSSRSNRSHHNHNHNHYRHDSRERHCRSRSRSRY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG3198-PA | 438 | CG3198-PA | 1..438 | 1..438 | 2330 | 100 | Plus |
CG7564-PD | 420 | CG7564-PD | 12..178 | 3..177 | 238 | 32.6 | Plus |
CG7564-PB | 420 | CG7564-PB | 12..178 | 3..177 | 238 | 32.6 | Plus |
CG7564-PC | 420 | CG7564-PC | 12..178 | 3..177 | 238 | 32.6 | Plus |
CG7564-PA | 420 | CG7564-PA | 12..178 | 3..177 | 238 | 32.6 | Plus |
CG7564-PD | 420 | CG7564-PD | 150..361 | 244..438 | 158 | 25.2 | Plus |
CG7564-PB | 420 | CG7564-PB | 150..361 | 244..438 | 158 | 25.2 | Plus |
CG7564-PC | 420 | CG7564-PC | 150..361 | 244..438 | 158 | 25.2 | Plus |