Clone RH42690 Report

Search the DGRC for RH42690

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:426
Well:90
Vector:pFlc-1
Associated Gene/TranscriptCG3198-RA
Protein status:RH42690.pep: gold
Preliminary Size:1516
Sequenced Size:1853

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3198 2002-01-01 Sim4 clustering to Release 2
CG3198 2002-06-26 Blastp of sequenced clone
CG3198 2003-01-01 Sim4 clustering to Release 3
CG3198 2008-04-29 Release 5.5 accounting
CG3198 2008-08-15 Release 5.9 accounting
CG3198 2008-12-18 5.12 accounting

Clone Sequence Records

RH42690.complete Sequence

1853 bp (1853 high quality bases) assembled on 2002-06-26

GenBank Submission: AY128494

> RH42690.complete
GATTCCGAAATAATCGATACCACGCGAATTTCGTGAAATAATTTTATTGA
TTCTATTTTGGCTAATTTTTTGGCTAAACAGCAGGAGCACAGCGTTGCAC
GTGTGTTCACCTGTTCGCCGGCACCGTTGTGGCCATAGAAGTCGGTGTGG
TACCATTGGATTCATTTGATTCACTGGGACCACCGCCCCCTTCGGAGTTT
TGTCCCCACAAATTGCGAAGGAGCCCCGGAAAATGGTGGACGCCGCCAGG
CAGATGCTCGACGAGCTGATGGGCAGGAATCGCAACCTGCATCCCTCGGA
GGCGGGCGCCAAGGTCAATTGGGAGGATCCGGAGTTCTGTCAGTTCTACA
ACGTTAAGTTCTGTCCGCACGATCTATTCATAAATACGCGCGCAGATCTG
GGCCCCTGTGCCCGCATCCACGACGAGGAAGCCCGACATCTCTACGAGGA
TGCTCGACCCTCGCAGCGGAAGCGTCAGTACGAGGATGAATTCCTGCGCT
TTTGCAATGTTATGCTGCACGATGTGGATCGAAAGATCCAGAAGGGAAAA
CAGCGTTTGCTGCTAATGCAAAGGGATCAGCCCAATGTACCGGCGCCACT
GAGCAGGCACCAGGAGCAGCTTGCGAATCTGACGGCCCGGATCAATAAGC
TGCTCTCTGAGGCAGAGGAAGCCGGCATTCGGGGTGACGTGGACCAGGCC
CAAGATCTAATGACCGTGTGCGAGGAGCTCAAGGAGGAGAAGGAACAGTT
GGTACAGCAATACGAGGCCCATCACAAGGCCATCAGCAGCATCAGCCTGA
CCAAGTCAGCGGAGGACGAGCTGCAGCATCACCCGCGCAGCAGTCCGGTC
ACAAATCCCAGCGAAGAAAGTCCAACTACTCCTCTTCCAGCCGCCACCAC
GCTAGATGAAGCGCCGGATGCAGCTCCAAGTTCCGCACAAGCAGCTGTCA
CAACGACTGACGATGCCGGTGAAGCAGCTGGTGCAGCCAGCGAGGACAAA
ACGTCAGAGAAGACGGATAGCAAGGCGGCTGGCTGGTCGCATGATGCCAT
GCCCGAGAAACAAATGAAGGTGTGCGAAATCTGTGGCGCTTTCCTGATAG
TCGGCGATGCACAGCAGCGGATCGAGGACCATTTGATGGGTAAACAGCAT
CTGGGCTACTCCAAACTGCGCAACGCCGTCGCCGAGATCAACGAGGCGCG
ACAGAAGGAGCGCGAGCAGGAGGAACGACGTCGACGTGAGGGTCGAGTGC
AGCGCTTCCACTCCTACGATAGCAGACGCGAGCCACGCAGTGAGTACCGC
GAGCGAAGTCGCGACTATGTTCAGAATCGCCAGCCCTCGGATCGACGTCA
CCATCACCATAAATCGCACCACAGCTCCCATCACTCGTATTCGCGCAGTG
GCGGTGGTGGCGGCGGTGTAGGAGTTGGCGGCGGAGGAGGTGGTGGAAGC
AGTCGGAGCAACCGGAGCCATCATAATCACAACCATAATCACTACCGCCA
TGACAGCCGCGAGCGACATTGCCGCAGCCGGAGTCGCAGTCGCTACTAGA
GACCAAAAAAAAAAAAGAAAAAGAAAAAGAAAAGATAAACACAATAGAAA
CCAAGTGAATAGCAAACCAAGAACACAAGTAAATAATCCGAAAGTCCGGA
GCACTTCCAGTTTCCAAAGCCCCATACCGCAAGTGTACAACAACTAAATA
TGATCAAGTTCAAAACGAACCCAATCTCTCGACCATCTGCGATCTTCAGT
CTTCGTCTTATGTGGTTCGCAAATCAGCAATTCGCAATCCGTAAGCACCA
GCTGCCGTGGCCACGGGCGGCAGCATCGAGGTATCCCAAAAAAAAAAAAA
AAA

RH42690.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:44:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG3198.b 5007 CG3198.b 14..1865 2..1853 9230 99.8 Plus
CG3198-RA 2554 CG3198-RA 118..1969 2..1853 9230 99.8 Plus
CG3198.a 2439 CG3198.a 60..1911 2..1853 9230 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:06:48
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 6564790..6565740 1278..328 4665 99.4 Minus
chrX 22417052 chrX 6563868..6564349 1837..1353 2315 99 Minus
chrX 22417052 chrX 6565805..6566137 334..2 1635 99.4 Minus
chrX 22417052 chrX 6564431..6564505 1352..1278 360 98.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:29:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:06:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6672620..6673570 1278..328 4740 99.9 Minus
X 23542271 X 6671679..6672179 1853..1353 2475 99.6 Minus
X 23542271 X 6673637..6673969 334..2 1665 100 Minus
X 23542271 X 6672262..6672336 1352..1278 375 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:18:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 6680718..6681668 1278..328 4740 99.8 Minus
X 23527363 X 6679777..6680277 1853..1353 2475 99.6 Minus
X 23527363 X 6681735..6682067 334..2 1665 100 Minus
X 23527363 X 6680360..6680434 1352..1278 375 100 Minus
Blast to na_te.dros performed 2019-03-16 13:06:46
Subject Length Description Subject Range Query Range Score Percent Strand
P-element 2907 P-element PPI251 2907bp AKA(V01520,X69493) Derived from X06779 (g58305) (Rel. 49, Last updated, Version 8). 2050..2112 1615..1556 136 73 Minus
TAHRE 10463 TAHRE OSV 10463bp 7690..7771 1558..1632 131 69.5 Plus

RH42690.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:07:46 Download gff for RH42690.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 6564431..6564504 1279..1352 98 <- Minus
chrX 6564790..6565733 335..1278 99 <- Minus
chrX 6565805..6566137 1..334 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:46:45 Download gff for RH42690.complete
Subject Subject Range Query Range Percent Splice Strand
CG3198-RA 1..1317 233..1549 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:18:59 Download gff for RH42690.complete
Subject Subject Range Query Range Percent Splice Strand
CG3198-RA 1..1317 233..1549 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:16:09 Download gff for RH42690.complete
Subject Subject Range Query Range Percent Splice Strand
CG3198-RA 1..1317 233..1549 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:10:04 Download gff for RH42690.complete
Subject Subject Range Query Range Percent Splice Strand
CG3198-RA 1..1317 233..1549 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:14:23 Download gff for RH42690.complete
Subject Subject Range Query Range Percent Splice Strand
CG3198-RA 1..1317 233..1549 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:44:08 Download gff for RH42690.complete
Subject Subject Range Query Range Percent Splice Strand
CG3198-RA 1..1836 2..1837 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:18:59 Download gff for RH42690.complete
Subject Subject Range Query Range Percent Splice Strand
CG3198-RA 1..1836 2..1837 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:16:09 Download gff for RH42690.complete
Subject Subject Range Query Range Percent Splice Strand
CG3198-RA 4..1840 1..1837 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:10:04 Download gff for RH42690.complete
Subject Subject Range Query Range Percent Splice Strand
CG3198-RA 1..1836 2..1837 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:14:23 Download gff for RH42690.complete
Subject Subject Range Query Range Percent Splice Strand
CG3198-RA 4..1840 1..1837 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:07:46 Download gff for RH42690.complete
Subject Subject Range Query Range Percent Splice Strand
X 6671695..6672179 1353..1837 100 <- Minus
X 6672262..6672335 1279..1352 100 <- Minus
X 6672620..6673563 335..1278 100 <- Minus
X 6673637..6673969 1..334 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:07:46 Download gff for RH42690.complete
Subject Subject Range Query Range Percent Splice Strand
X 6671695..6672179 1353..1837 100 <- Minus
X 6672262..6672335 1279..1352 100 <- Minus
X 6672620..6673563 335..1278 100 <- Minus
X 6673637..6673969 1..334 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:07:46 Download gff for RH42690.complete
Subject Subject Range Query Range Percent Splice Strand
X 6671695..6672179 1353..1837 100 <- Minus
X 6672262..6672335 1279..1352 100 <- Minus
X 6672620..6673563 335..1278 100 <- Minus
X 6673637..6673969 1..334 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:16:09 Download gff for RH42690.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6565728..6566212 1353..1837 100 <- Minus
arm_X 6566295..6566368 1279..1352 100 <- Minus
arm_X 6566653..6567596 335..1278 100 <- Minus
arm_X 6567670..6568002 1..334 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:42:16 Download gff for RH42690.complete
Subject Subject Range Query Range Percent Splice Strand
X 6679793..6680277 1353..1837 100 <- Minus
X 6680360..6680433 1279..1352 100 <- Minus
X 6680718..6681661 335..1278 100 <- Minus
X 6681735..6682067 1..334 99   Minus

RH42690.pep Sequence

Translation from 232 to 1548

> RH42690.pep
MVDAARQMLDELMGRNRNLHPSEAGAKVNWEDPEFCQFYNVKFCPHDLFI
NTRADLGPCARIHDEEARHLYEDARPSQRKRQYEDEFLRFCNVMLHDVDR
KIQKGKQRLLLMQRDQPNVPAPLSRHQEQLANLTARINKLLSEAEEAGIR
GDVDQAQDLMTVCEELKEEKEQLVQQYEAHHKAISSISLTKSAEDELQHH
PRSSPVTNPSEESPTTPLPAATTLDEAPDAAPSSAQAAVTTTDDAGEAAG
AASEDKTSEKTDSKAAGWSHDAMPEKQMKVCEICGAFLIVGDAQQRIEDH
LMGKQHLGYSKLRNAVAEINEARQKEREQEERRRREGRVQRFHSYDSRRE
PRSEYRERSRDYVQNRQPSDRRHHHHKSHHSSHHSYSRSGGGGGGVGVGG
GGGGGSSRSNRSHHNHNHNHYRHDSRERHCRSRSRSRY*

RH42690.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:55:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21898-PA 450 GF21898-PA 1..379 1..370 1271 71.8 Plus
Dana\GF10538-PA 415 GF10538-PA 4..171 2..177 214 31.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:55:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17666-PA 447 GG17666-PA 1..371 1..370 1598 90.1 Plus
Dere\GG13623-PA 413 GG13623-PA 4..171 2..177 223 32.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:55:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24239-PA 457 GH24239-PA 1..401 1..370 1182 68 Plus
Dgri\GH16088-PA 432 GH16088-PA 11..179 2..177 232 32.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:18:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG3198-PA 438 CG3198-PA 1..438 1..438 2330 100 Plus
CG7564-PD 420 CG7564-PD 12..178 3..177 238 32.6 Plus
CG7564-PB 420 CG7564-PB 12..178 3..177 238 32.6 Plus
CG7564-PC 420 CG7564-PC 12..178 3..177 238 32.6 Plus
CG7564-PA 420 CG7564-PA 12..178 3..177 238 32.6 Plus
CG7564-PD 420 CG7564-PD 150..361 244..438 158 25.2 Plus
CG7564-PB 420 CG7564-PB 150..361 244..438 158 25.2 Plus
CG7564-PC 420 CG7564-PC 150..361 244..438 158 25.2 Plus
CG7564-PA 420 CG7564-PA 150..361 244..438 158 25.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:55:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21435-PA 442 GI21435-PA 1..392 1..372 1151 66.2 Plus
Dmoj\GI12351-PA 422 GI12351-PA 11..179 2..177 228 31.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:55:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13371-PA 273 GL13371-PA 1..186 1..187 865 85.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:55:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16595-PA 443 GA16595-PA 1..429 1..424 1214 67 Plus
Dpse\GA20443-PA 442 GA20443-PA 11..178 2..177 219 31.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:55:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12566-PA 437 GM12566-PA 1..402 1..402 2088 96 Plus
Dsec\GM25708-PA 412 GM25708-PA 4..171 2..177 228 32.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:55:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16187-PA 349 GD16187-PA 1..349 1..349 1534 95.7 Plus
Dsim\GD14714-PA 210 GD14714-PA 4..171 2..177 224 32.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:55:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16453-PA 370 GJ16453-PA 1..370 1..349 1060 66.9 Plus
Dvir\GJ12244-PA 361 GJ12244-PA 4..172 2..177 227 32.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:55:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25344-PA 424 GK25344-PA 1..373 1..372 1250 71 Plus
Dwil\GK17748-PA 421 GK17748-PA 4..171 2..177 218 31.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:55:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16456-PA 446 GE16456-PA 1..372 1..370 1576 93 Plus
Dyak\GE19919-PA 413 GE19919-PA 4..171 2..177 226 32.4 Plus

RH42690.hyp Sequence

Translation from 232 to 1548

> RH42690.hyp
MVDAARQMLDELMGRNRNLHPSEAGAKVNWEDPEFCQFYNVKFCPHDLFI
NTRADLGPCARIHDEEARHLYEDARPSQRKRQYEDEFLRFCNVMLHDVDR
KIQKGKQRLLLMQRDQPNVPAPLSRHQEQLANLTARINKLLSEAEEAGIR
GDVDQAQDLMTVCEELKEEKEQLVQQYEAHHKAISSISLTKSAEDELQHH
PRSSPVTNPSEESPTTPLPAATTLDEAPDAAPSSAQAAVTTTDDAGEAAG
AASEDKTSEKTDSKAAGWSHDAMPEKQMKVCEICGAFLIVGDAQQRIEDH
LMGKQHLGYSKLRNAVAEINEARQKEREQEERRRREGRVQRFHSYDSRRE
PRSEYRERSRDYVQNRQPSDRRHHHHKSHHSSHHSYSRSGGGGGGVGVGG
GGGGGSSRSNRSHHNHNHNHYRHDSRERHCRSRSRSRY*

RH42690.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:37:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG3198-PA 438 CG3198-PA 1..438 1..438 2330 100 Plus
CG7564-PD 420 CG7564-PD 12..178 3..177 238 32.6 Plus
CG7564-PB 420 CG7564-PB 12..178 3..177 238 32.6 Plus
CG7564-PC 420 CG7564-PC 12..178 3..177 238 32.6 Plus
CG7564-PA 420 CG7564-PA 12..178 3..177 238 32.6 Plus
CG7564-PD 420 CG7564-PD 150..361 244..438 158 25.2 Plus
CG7564-PB 420 CG7564-PB 150..361 244..438 158 25.2 Plus
CG7564-PC 420 CG7564-PC 150..361 244..438 158 25.2 Plus