BDGP Sequence Production Resources |
Search the DGRC for RH44312
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 443 |
Well: | 12 |
Vector: | pFlc-1 |
Associated Gene/Transcript | mRpS9-RA |
Protein status: | RH44312.pep: gold |
Preliminary Size: | 974 |
Sequenced Size: | 1313 |
Gene | Date | Evidence |
---|---|---|
CG2957 | 2002-01-01 | Sim4 clustering to Release 2 |
CG2957 | 2002-02-27 | Blastp of sequenced clone |
CG2957 | 2003-01-01 | Sim4 clustering to Release 3 |
mRpS9 | 2008-04-29 | Release 5.5 accounting |
mRpS9 | 2008-08-15 | Release 5.9 accounting |
mRpS9 | 2008-12-18 | 5.12 accounting |
1313 bp (1313 high quality bases) assembled on 2002-02-27
GenBank Submission: AY089671
> RH44312.complete CACCTCTTCTTCTTCCGCAAAATTGAAAGGATGGCACTGCGTGTTTTTGG CTTAAATATAGTAAAAAATAACAGGAATCTGCTGCAAAATGCATGCAAAT CCAGGGCACCGATGCCATGCTACATGGCAGCGGCTCCATTTGCCACCGAT GTGACCGTCCAGGCTGCTCCGGCGGCTGTCCAGAAGCAAAGGGTGAGCAA GGCCATGCGGGCGTACCTGAAAAGAGCCACCGAACACGACGAGTTCATGA AGACCCAGCACCTGGAGTTCCAGATCGGAAAGCGGCACCTGGCCAACATG ATGGGCGCCGATGCGGAGACGTTTACCCAGGAGGACATAGACGAGGCGAT ATCCTATCTGTTCCCTTCCGGATTGTACGACCAAAAGGCCCGGCCGGCTA TGAAGTCACCCGAGGTTGTCTTCCCCGCCCGCAAGGCTGCGGAATTCGAT GAGACGGGCAGACCATTCCACAGCATGTTCTACACCGGCAAACCCAACTT CTTCCAACTGCTTCATGACATTGTAGAAGAAACTAACAAGCTGGCGGATC TGGAGGAGCGCATGCTACGGCGCGGCAATAAACCCGATGAGAACCAAAAA CTTGAGATTGCCGGCTTTCAGCTGCTGCCCAAGGACCAGTTGGAACTTTT GCTAGTTGAGAGCATTGCCGATATCGAATACTCCAACTTTACCAACTCCA TGGATCGCCTGATCGCATCGCCATATGCTTACAAGAGCAAAGCATTCATC GAGCGATACATGAAACCGCTGATGGACCAGTCCAAGCAGCTGGAGGTGCC CAAACCAAGGATCGATGAAGAGGGTCGCCAGTACATCACCACCTACGAGT GCCTGCGCAAAACTGCTAGAGCCGATGTCACAGTGCGGCTACCCGGAACA GGAAAAATCAGCATTAATGGAAAGGATATCTCATACTTTGAGGACGAAAA CTGCAGAGAACAGCTGCTCTTCCCGCTGCAATTTAGCGAGCTGCTGGGCA AAGTCGATGTGGAGGCCAACGTCGAGGGAGGCGGACCTTCCGGTCAGGCT GGAGCCATCCGCTGGGGCATCGCCATGAGTTTGCGCAGCTTTGTCGATCA AGAGATGATTGAGTCAATGCGTCTGGCCGGCCTGCTGACACGTGACTATC GCCGTCGGGAGCGTAAGAAGTTCGGGCAGGAAGGAGCACGCCGCAAGTAC ACGTGGAAGAAGCGCTAGACGGGCACGTGCATCTGCAACACTAGGCTGCA TTTTATAGCGAAGTGTTTTAATAAATATAAATTGTGTTAAAAAAAAAGAA AAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mRpS9-RA | 1340 | mRpS9-RA | 40..1326 | 4..1290 | 6435 | 100 | Plus |
CG10092.a | 2002 | CG10092.a | 1849..2002 | 1290..1137 | 770 | 100 | Minus |
CG10092-RA | 1943 | CG10092-RA | 1882..1943 | 1290..1229 | 310 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 3727419..3727779 | 963..603 | 1805 | 100 | Minus |
chr3R | 27901430 | chr3R | 3728273..3728490 | 343..126 | 1090 | 100 | Minus |
chr3R | 27901430 | chr3R | 3728041..3728215 | 517..343 | 875 | 100 | Minus |
chr3R | 27901430 | chr3R | 3715531..3715696 | 1126..961 | 830 | 100 | Minus |
chr3R | 27901430 | chr3R | 3715297..3715461 | 1290..1126 | 825 | 100 | Minus |
chr3R | 27901430 | chr3R | 3728571..3728694 | 127..4 | 620 | 100 | Minus |
chr3R | 27901430 | chr3R | 3727845..3727930 | 602..517 | 430 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 7901384..7901744 | 963..603 | 1805 | 100 | Minus |
3R | 32079331 | 3R | 7902238..7902455 | 343..126 | 1090 | 100 | Minus |
3R | 32079331 | 3R | 7902006..7902180 | 517..343 | 875 | 100 | Minus |
3R | 32079331 | 3R | 7889509..7889674 | 1126..961 | 830 | 100 | Minus |
3R | 32079331 | 3R | 7889275..7889439 | 1290..1126 | 825 | 100 | Minus |
3R | 32079331 | 3R | 7902536..7902659 | 127..4 | 620 | 100 | Minus |
3R | 32079331 | 3R | 7901810..7901895 | 602..517 | 430 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 7642215..7642575 | 963..603 | 1805 | 100 | Minus |
3R | 31820162 | 3R | 7643069..7643286 | 343..126 | 1090 | 100 | Minus |
3R | 31820162 | 3R | 7642837..7643011 | 517..343 | 875 | 100 | Minus |
3R | 31820162 | 3R | 7630340..7630505 | 1126..961 | 830 | 100 | Minus |
3R | 31820162 | 3R | 7630106..7630270 | 1290..1126 | 825 | 100 | Minus |
3R | 31820162 | 3R | 7643367..7643490 | 127..4 | 620 | 100 | Minus |
3R | 31820162 | 3R | 7642641..7642726 | 602..517 | 430 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 3715297..3715460 | 1127..1290 | 100 | <- | Minus |
chr3R | 3715531..3715693 | 964..1126 | 100 | <- | Minus |
chr3R | 3727419..3727779 | 603..963 | 100 | <- | Minus |
chr3R | 3727845..3727930 | 517..602 | 100 | <- | Minus |
chr3R | 3728042..3728215 | 343..516 | 100 | <- | Minus |
chr3R | 3728274..3728489 | 127..342 | 100 | <- | Minus |
chr3R | 3728572..3728694 | 1..126 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpS9-RA | 1..1188 | 31..1218 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpS9-RA | 1..1188 | 31..1218 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpS9-RA | 1..1188 | 31..1218 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpS9-RA | 1..1188 | 31..1218 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpS9-RA | 1..1188 | 31..1218 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpS9-RA | 1..1290 | 2..1290 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpS9-RA | 1..1290 | 2..1290 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpS9-RA | 5..1293 | 1..1288 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpS9-RA | 1..1290 | 2..1290 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpS9-RA | 5..1293 | 1..1288 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 7889275..7889438 | 1127..1290 | 100 | <- | Minus |
3R | 7889509..7889671 | 964..1126 | 100 | <- | Minus |
3R | 7901384..7901744 | 603..963 | 100 | <- | Minus |
3R | 7901810..7901895 | 517..602 | 100 | <- | Minus |
3R | 7902007..7902180 | 343..516 | 100 | <- | Minus |
3R | 7902239..7902454 | 127..342 | 100 | <- | Minus |
3R | 7902537..7902659 | 1..126 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 7889275..7889438 | 1127..1290 | 100 | <- | Minus |
3R | 7889509..7889671 | 964..1126 | 100 | <- | Minus |
3R | 7901384..7901744 | 603..963 | 100 | <- | Minus |
3R | 7901810..7901895 | 517..602 | 100 | <- | Minus |
3R | 7902007..7902180 | 343..516 | 100 | <- | Minus |
3R | 7902239..7902454 | 127..342 | 100 | <- | Minus |
3R | 7902537..7902659 | 1..126 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 7889275..7889438 | 1127..1290 | 100 | <- | Minus |
3R | 7889509..7889671 | 964..1126 | 100 | <- | Minus |
3R | 7901384..7901744 | 603..963 | 100 | <- | Minus |
3R | 7901810..7901895 | 517..602 | 100 | <- | Minus |
3R | 7902007..7902180 | 343..516 | 100 | <- | Minus |
3R | 7902239..7902454 | 127..342 | 100 | <- | Minus |
3R | 7902537..7902659 | 1..126 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 3728259..3728381 | 1..126 | 97 | Minus | |
arm_3R | 3727106..3727466 | 603..963 | 100 | <- | Minus |
arm_3R | 3727532..3727617 | 517..602 | 100 | <- | Minus |
arm_3R | 3727729..3727902 | 343..516 | 100 | <- | Minus |
arm_3R | 3727961..3728176 | 127..342 | 100 | <- | Minus |
arm_3R | 3714997..3715160 | 1127..1290 | 100 | <- | Minus |
arm_3R | 3715231..3715393 | 964..1126 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 7642215..7642575 | 603..963 | 100 | <- | Minus |
3R | 7642641..7642726 | 517..602 | 100 | <- | Minus |
3R | 7642838..7643011 | 343..516 | 100 | <- | Minus |
3R | 7643070..7643285 | 127..342 | 100 | <- | Minus |
3R | 7643368..7643490 | 1..126 | 97 | Minus | |
3R | 7630106..7630269 | 1127..1290 | 100 | <- | Minus |
3R | 7630340..7630502 | 964..1126 | 100 | <- | Minus |
Translation from 3 to 1217
> RH44312.hyp LFFFRKIERMALRVFGLNIVKNNRNLLQNACKSRAPMPCYMAAAPFATDV TVQAAPAAVQKQRVSKAMRAYLKRATEHDEFMKTQHLEFQIGKRHLANMM GADAETFTQEDIDEAISYLFPSGLYDQKARPAMKSPEVVFPARKAAEFDE TGRPFHSMFYTGKPNFFQLLHDIVEETNKLADLEERMLRRGNKPDENQKL EIAGFQLLPKDQLELLLVESIADIEYSNFTNSMDRLIASPYAYKSKAFIE RYMKPLMDQSKQLEVPKPRIDEEGRQYITTYECLRKTARADVTVRLPGTG KISINGKDISYFEDENCREQLLFPLQFSELLGKVDVEANVEGGGPSGQAG AIRWGIAMSLRSFVDQEMIESMRLAGLLTRDYRRRERKKFGQEGARRKYT WKKR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mRpS9-PA | 395 | CG2957-PA | 1..395 | 10..404 | 2036 | 100 | Plus |
Translation from 30 to 1217
> RH44312.pep MALRVFGLNIVKNNRNLLQNACKSRAPMPCYMAAAPFATDVTVQAAPAAV QKQRVSKAMRAYLKRATEHDEFMKTQHLEFQIGKRHLANMMGADAETFTQ EDIDEAISYLFPSGLYDQKARPAMKSPEVVFPARKAAEFDETGRPFHSMF YTGKPNFFQLLHDIVEETNKLADLEERMLRRGNKPDENQKLEIAGFQLLP KDQLELLLVESIADIEYSNFTNSMDRLIASPYAYKSKAFIERYMKPLMDQ SKQLEVPKPRIDEEGRQYITTYECLRKTARADVTVRLPGTGKISINGKDI SYFEDENCREQLLFPLQFSELLGKVDVEANVEGGGPSGQAGAIRWGIAMS LRSFVDQEMIESMRLAGLLTRDYRRRERKKFGQEGARRKYTWKKR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16848-PA | 395 | GF16848-PA | 1..395 | 1..395 | 1957 | 91.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24884-PA | 395 | GG24884-PA | 1..395 | 1..395 | 2032 | 95.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19026-PA | 395 | GH19026-PA | 1..395 | 1..395 | 1843 | 85.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mRpS9-PA | 395 | CG2957-PA | 1..395 | 1..395 | 2036 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22839-PA | 396 | GI22839-PA | 1..396 | 1..395 | 1856 | 85.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12144-PA | 396 | GL12144-PA | 1..396 | 1..395 | 1912 | 89.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15542-PA | 396 | GA15542-PA | 1..396 | 1..395 | 1912 | 89.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10449-PA | 293 | GM10449-PA | 1..283 | 1..312 | 1284 | 80.2 | Plus |
Dsec\GM21042-PA | 86 | GM21042-PA | 3..86 | 312..395 | 442 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19454-PA | 395 | GD19454-PA | 1..395 | 1..395 | 2091 | 98.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24698-PA | 396 | GJ24698-PA | 1..396 | 1..395 | 1824 | 84.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11052-PA | 394 | GK11052-PA | 1..394 | 1..395 | 1855 | 85.6 | Plus |