BDGP Sequence Production Resources |
Search the DGRC for RH44336
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 443 |
Well: | 36 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Adf1-RC |
Protein status: | RH44336.pep: gold |
Sequenced Size: | 1692 |
Gene | Date | Evidence |
---|---|---|
Adf1-RC | 2008-10-21 | Manual selection by Sue Celniker |
1692 bp assembled on 2009-07-27
GenBank Submission: BT088961.1
> RH44336.complete GAATTGGCAGAGACGCGACTGAGCTGGGACGTACCGTTACCGTTGGCAGA GACGCGACTGAGAAATAAAATTAAAACGTCGACGTTCCTTCCTCGTAGAA GAAACCAATCAAAATAAAAACAAACAGAGCGTGCGTTCGCGCCAAATACT TAACAACAATTAGCAAACGTAAGAAGCAAATGCATACCCTCACGGCGGCC ATTGAGATGGACAAGCTGGATGCCAATCTTGAGCAGCAGTTTGATCTCAA TCTCATCGAGGCTGTCAAGCTGAACCCAGTGATATACGACAGGTCGCACT ACAATTACAAGCACTTTGTGCGCAAGGCCCAGACCTGGAAACAAATCGCC GAAACGCTCGGTGTGCCTGAACAAAAATGTACGAAGCGCTGGAAGAGTCT GCGCGACAAGTTCGCCCGCGAGATGAAACTATGTCAGGAATCGCGCTGGC GTTACTTCAAGCAGATGCAATTCCTGGTTGACTCCATCCGCCAGTATCGA GAGTCGCTGCTCGGCAAGTGCGCCAATGGGAGTCAAAGCGCCAACCAGGT GGCCGATCCGTCGCAGCAGCAGCAGGCGCAGCAACAGACCGTCGTGGATA TATTTGCACAGCCCTTCAACGGCAGCGCCACAACCTCGGCCCAGGCACTG ACCCATCCGCATGAAATTACTGTCACCAGCGATGCACAGCTGGCCACTGC CGTGGGCAAGGACCAAAAGCCATACTTCTACGAGCCGCCGCTCAAGCGAG AGCGCAGTGAGGAGGAGCACAGCGACAACATGCTCAACACCATCAAGATT TTCCAAAACAACGTCTCGCAGGCGGTCAGCGCCGAGGACCAGTCGTTCGG CATGGTAGTCACGGACATGCTCAACACGCTGGGCGTGCGACAAAAGGCAG AGGCGAAGGTGCACATCATCAAGTATCTGACGGACATGCAGCTTCTGGCA CAGCACAACAAGTACTAACTGTCGGGCGGCTGTCATCGGCAGCTGCTGCA GCTGCTCCAACTGGAGAGCGTTCTGCCCTGAGATCAAACGAGAACAGACC CACGGCTACCCACATCCACATCTACACGGGTTTGGGGGTCCTGTGCGGTC ATTTTCTACAGTTCATAGGTCTTAAAGTCAAACTACAGAATAACATTAGA CGTAACATCCCACAGCGTAAACCATAACGCGTAATGATACTTCCCCACGC CCATGTAGACAAACATATATATTTATATGCTTAGTTGACCCCATGATCGG TGATTTAATTCGCGCCCAGTTCTCAGCTCTGTACAAAAAATGCGATTGAA AATAGCGATTCTAGAATTATGAGTAGCTTGTTAAAAGACCGTGGAAACAC TTTATATGCAGCGTATTGTAAATTTTGACTACGATTTAGTTGTAATTTGC CATCGGGTCTTAGCTCTAAAACTAAGTATACACGTAAAAGTTATTTTAAT TTTATAAGTTCTGTTGTAATATGCCGAAAACGCTTGAAAGACACTTTGAA ATGCTTAATTAAGTGTGACAAAGGGAAACATAAAACACCTTTTTCATAGT GATCGCATATTACACACTTTACATGGATACGAGTAAAATCGAAATAGTTG CCGGCAACGCCAGTTGCTAAACATTTTTAATGATTAATTGTGCAATTATT TGGTATTAAATGAAACATTTGAAAGCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Adf1-RC | 1841 | Adf1-RC | 60..1733 | 2..1675 | 8370 | 100 | Plus |
Adf1-RB | 1961 | Adf1-RB | 359..1853 | 181..1675 | 7475 | 100 | Plus |
Adf1-RA | 1829 | Adf1-RA | 227..1721 | 181..1675 | 7475 | 100 | Plus |
Adf1-RB | 1961 | Adf1-RB | 60..238 | 2..180 | 895 | 100 | Plus |
Adf1-RA | 1829 | Adf1-RA | 60..226 | 2..168 | 835 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 2554264..2555276 | 663..1675 | 5065 | 100 | Plus |
chr2R | 21145070 | chr2R | 2553911..2554205 | 369..663 | 1475 | 100 | Plus |
chr2R | 21145070 | chr2R | 2549762..2549950 | 181..369 | 945 | 100 | Plus |
chr2R | 21145070 | chr2R | 2549463..2549641 | 2..180 | 895 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 6667072..6668084 | 663..1675 | 5065 | 100 | Plus |
2R | 25286936 | 2R | 6666719..6667013 | 369..663 | 1475 | 100 | Plus |
2R | 25286936 | 2R | 6662569..6662757 | 181..369 | 945 | 100 | Plus |
2R | 25286936 | 2R | 6662270..6662448 | 2..180 | 895 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 6668271..6669283 | 663..1675 | 5065 | 100 | Plus |
2R | 25260384 | 2R | 6667918..6668212 | 369..663 | 1475 | 100 | Plus |
2R | 25260384 | 2R | 6663768..6663956 | 181..369 | 945 | 100 | Plus |
2R | 25260384 | 2R | 6663469..6663647 | 2..180 | 895 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
412 | 7567 | 412 412 7567bp | 6929..6987 | 70..128 | 115 | 66.1 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 2549462..2549641 | 1..180 | 99 | -> | Plus |
chr2R | 2549762..2549950 | 181..369 | 100 | -> | Plus |
chr2R | 2553912..2554205 | 370..663 | 100 | -> | Plus |
chr2R | 2554265..2555276 | 664..1676 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Adf1-RC | 1..789 | 180..968 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Adf1-RC | 1..789 | 180..968 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Adf1-RE | 1..825 | 207..1031 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Adf1-RE | 1..825 | 207..1031 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Adf1-RC | 2..1675 | 2..1676 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Adf1-RC | 2..1675 | 2..1676 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Adf1-RC | 1..1674 | 2..1676 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Adf1-RC | 1..1674 | 2..1676 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 6662269..6662448 | 1..180 | 99 | -> | Plus |
2R | 6662569..6662757 | 181..369 | 100 | -> | Plus |
2R | 6666720..6667013 | 370..663 | 100 | -> | Plus |
2R | 6667073..6668084 | 664..1676 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 6662269..6662448 | 1..180 | 99 | -> | Plus |
2R | 6662569..6662757 | 181..369 | 100 | -> | Plus |
2R | 6666720..6667013 | 370..663 | 100 | -> | Plus |
2R | 6667073..6668084 | 664..1676 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 6662269..6662448 | 1..180 | 99 | -> | Plus |
2R | 6662569..6662757 | 181..369 | 100 | -> | Plus |
2R | 6666720..6667013 | 370..663 | 100 | -> | Plus |
2R | 6667073..6668084 | 664..1676 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 2554225..2554518 | 370..663 | 100 | -> | Plus |
arm_2R | 2549774..2549953 | 1..180 | 99 | -> | Plus |
arm_2R | 2550074..2550262 | 181..369 | 100 | -> | Plus |
arm_2R | 2554578..2555589 | 664..1676 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 6667919..6668212 | 370..663 | 100 | -> | Plus |
2R | 6668272..6669283 | 664..1676 | 99 | Plus | |
2R | 6663768..6663956 | 181..369 | 100 | -> | Plus |
2R | 6663468..6663647 | 1..180 | 99 | -> | Plus |
Translation from 179 to 967
> RH44336.hyp MHTLTAAIEMDKLDANLEQQFDLNLIEAVKLNPVIYDRSHYNYKHFVRKA QTWKQIAETLGVPEQKCTKRWKSLRDKFAREMKLCQESRWRYFKQMQFLV DSIRQYRESLLGKCANGSQSANQVADPSQQQQAQQQTVVDIFAQPFNGSA TTSAQALTHPHEITVTSDAQLATAVGKDQKPYFYEPPLKRERSEEEHSDN MLNTIKIFQNNVSQAVSAEDQSFGMVVTDMLNTLGVRQKAEAKVHIIKYL TDMQLLAQHNKY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Adf1-PC | 262 | CG15845-PC | 1..262 | 1..262 | 1355 | 100 | Plus |
Adf1-PB | 253 | CG15845-PB | 1..253 | 10..262 | 1311 | 100 | Plus |
Adf1-PA | 253 | CG15845-PA | 1..253 | 10..262 | 1311 | 100 | Plus |
Adf1-PE | 274 | CG15845-PE | 1..253 | 10..262 | 1311 | 100 | Plus |
CG10949-PB | 459 | CG10949-PB | 129..391 | 9..245 | 173 | 25.7 | Plus |
Translation from 179 to 967
> RH44336.pep MHTLTAAIEMDKLDANLEQQFDLNLIEAVKLNPVIYDRSHYNYKHFVRKA QTWKQIAETLGVPEQKCTKRWKSLRDKFAREMKLCQESRWRYFKQMQFLV DSIRQYRESLLGKCANGSQSANQVADPSQQQQAQQQTVVDIFAQPFNGSA TTSAQALTHPHEITVTSDAQLATAVGKDQKPYFYEPPLKRERSEEEHSDN MLNTIKIFQNNVSQAVSAEDQSFGMVVTDMLNTLGVRQKAEAKVHIIKYL TDMQLLAQHNKY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11060-PA | 535 | GF11060-PA | 274..535 | 1..262 | 1420 | 98.5 | Plus |
Dana\GF15373-PA | 460 | GF15373-PA | 141..255 | 25..130 | 182 | 35.6 | Plus |
Dana\GF10717-PA | 679 | GF10717-PA | 302..398 | 16..105 | 154 | 33 | Plus |
Dana\GF15373-PA | 460 | GF15373-PA | 3..102 | 22..112 | 149 | 34 | Plus |
Dana\GF17699-PA | 337 | GF17699-PA | 28..121 | 20..107 | 146 | 35.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23211-PA | 253 | GG23211-PA | 1..253 | 10..262 | 1367 | 99.6 | Plus |
Dere\GG21572-PA | 459 | GG21572-PA | 141..391 | 25..245 | 179 | 25.6 | Plus |
Dere\GG13380-PA | 678 | GG13380-PA | 39..139 | 22..117 | 154 | 33.3 | Plus |
Dere\GG21572-PA | 459 | GG21572-PA | 3..102 | 22..112 | 152 | 35 | Plus |
Dere\GG13380-PA | 678 | GG13380-PA | 306..402 | 16..105 | 150 | 32 | Plus |
Dere\GG11417-PA | 336 | GG11417-PA | 28..121 | 20..107 | 146 | 34 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21743-PA | 253 | GH21743-PA | 1..253 | 10..262 | 1340 | 96.8 | Plus |
Dgri\GH14617-PA | 770 | GH14617-PA | 402..498 | 16..105 | 167 | 35.1 | Plus |
Dgri\GH11654-PA | 502 | GH11654-PA | 142..236 | 25..116 | 164 | 40.8 | Plus |
Dgri\GH11654-PA | 502 | GH11654-PA | 3..88 | 22..101 | 151 | 36 | Plus |
Dgri\GH20726-PA | 334 | GH20726-PA | 12..95 | 22..99 | 151 | 32.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Adf1-PC | 262 | CG15845-PC | 1..262 | 1..262 | 1355 | 100 | Plus |
Adf1-PE | 274 | CG15845-PE | 1..253 | 10..262 | 1311 | 100 | Plus |
Adf1-PB | 253 | CG15845-PB | 1..253 | 10..262 | 1311 | 100 | Plus |
Adf1-PA | 253 | CG15845-PA | 1..253 | 10..262 | 1311 | 100 | Plus |
CG10949-PB | 459 | CG10949-PB | 129..391 | 9..245 | 173 | 25.7 | Plus |
CG10949-PA | 459 | CG10949-PA | 129..391 | 9..245 | 173 | 25.7 | Plus |
CG8765-PB | 600 | CG8765-PB | 220..316 | 16..105 | 156 | 32 | Plus |
CG8765-PC | 688 | CG8765-PC | 308..404 | 16..105 | 156 | 32 | Plus |
CG8765-PA | 690 | CG8765-PA | 310..406 | 16..105 | 156 | 32 | Plus |
CG10949-PB | 459 | CG10949-PB | 3..92 | 22..105 | 150 | 34.4 | Plus |
CG10949-PA | 459 | CG10949-PA | 3..92 | 22..105 | 150 | 34.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19291-PA | 253 | GI19291-PA | 1..253 | 10..262 | 1343 | 97.2 | Plus |
Dmoj\GI17956-PA | 461 | GI17956-PA | 142..253 | 25..137 | 172 | 37.8 | Plus |
Dmoj\GI13504-PA | 728 | GI13504-PA | 349..454 | 16..116 | 165 | 34.3 | Plus |
Dmoj\GI20810-PA | 335 | GI20810-PA | 12..95 | 22..99 | 149 | 32.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11108-PA | 250 | GL11108-PA | 1..250 | 10..262 | 1249 | 93.7 | Plus |
Dper\GL26413-PA | 448 | GL26413-PA | 140..254 | 25..130 | 156 | 33 | Plus |
Dper\GL20873-PA | 737 | GL20873-PA | 306..402 | 16..105 | 151 | 32 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA13983-PA | 250 | GA13983-PA | 1..250 | 10..262 | 1249 | 93.7 | Plus |
Dpse\GA10661-PA | 448 | GA10661-PA | 140..254 | 25..130 | 156 | 33 | Plus |
Dpse\GA21303-PA | 697 | GA21303-PA | 320..416 | 16..105 | 151 | 32 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20885-PA | 253 | GM20885-PA | 1..253 | 10..262 | 1367 | 99.6 | Plus |
Dsec\GM23328-PA | 459 | GM23328-PA | 141..391 | 25..245 | 186 | 26.8 | Plus |
Dsec\GM16842-PA | 683 | GM16842-PA | 35..135 | 22..117 | 153 | 32.4 | Plus |
Dsec\GM10256-PA | 336 | GM10256-PA | 28..121 | 20..107 | 152 | 36.2 | Plus |
Dsec\GM16842-PA | 683 | GM16842-PA | 302..398 | 16..105 | 151 | 32 | Plus |
Dsec\GM23328-PA | 459 | GM23328-PA | 3..102 | 22..112 | 150 | 35 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10415-PA | 253 | GD10415-PA | 1..253 | 10..262 | 1367 | 99.6 | Plus |
Dsim\GD21703-PA | 459 | GD21703-PA | 141..391 | 25..245 | 182 | 26.8 | Plus |
Dsim\GD21228-PA | 336 | GD21228-PA | 28..121 | 20..107 | 152 | 36.2 | Plus |
Dsim\GD12257-PA | 682 | GD12257-PA | 35..135 | 22..117 | 152 | 32.4 | Plus |
Dsim\GD12257-PA | 682 | GD12257-PA | 302..398 | 16..105 | 151 | 32 | Plus |
Dsim\GD21703-PA | 459 | GD21703-PA | 3..102 | 22..112 | 150 | 35 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22167-PA | 253 | GJ22167-PA | 1..253 | 10..262 | 1351 | 98 | Plus |
Dvir\GJ11865-PA | 706 | GJ11865-PA | 338..443 | 16..116 | 165 | 34.3 | Plus |
Dvir\GJ20543-PA | 330 | GJ20543-PA | 12..95 | 22..99 | 152 | 34.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK23084-PA | 253 | GK23084-PA | 1..253 | 10..262 | 1322 | 97.2 | Plus |
Dwil\GK18122-PA | 430 | GK18122-PA | 149..229 | 25..99 | 165 | 43.2 | Plus |
Dwil\GK25760-PA | 693 | GK25760-PA | 305..403 | 16..105 | 150 | 32.3 | Plus |
Dwil\GK18122-PA | 430 | GK18122-PA | 3..88 | 22..101 | 147 | 36 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE19065-PA | 253 | GE19065-PA | 1..253 | 10..262 | 1367 | 99.6 | Plus |
Dyak\GE12593-PA | 459 | GE12593-PA | 141..321 | 25..187 | 179 | 30.2 | Plus |
Dyak\GE22473-PA | 679 | GE22473-PA | 311..407 | 16..105 | 151 | 32 | Plus |
Dyak\GE22473-PA | 679 | GE22473-PA | 39..139 | 22..117 | 148 | 32.4 | Plus |
Dyak\GE22475-PA | 745 | GE22475-PA | 378..474 | 16..105 | 148 | 32 | Plus |