BDGP Sequence Production Resources |
Search the DGRC for RH44661
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 446 |
Well: | 61 |
Vector: | pFlc-1 |
Associated Gene/Transcript | sip2-RC |
Protein status: | RH44661.pep: gold |
Sequenced Size: | 2035 |
Gene | Date | Evidence |
---|---|---|
sip2-RD | 2010-12-03 | Manual selection by Ken Wan |
2035 bp assembled on 2011-06-21
GenBank Submission: BT128757.1
> RH44661.complete GACTTTCAAACAAGCCACCTGCATGTCAAAATTGTTAGAGAAACACTTGC CGAAAAAGCCCGTGAAAATGGACGAAACGAAGGATATGCGCTATAGTTTG GAGATCGACGAGGATTTGAGGAGACCCTTGGAGGCGCGGGCCAAGAAAGT TCTGGCCGTTAATTCTGCCAGTCAAAGGACTGTTAATCTCGGCGAGGATA CTATGTACGAGGCAGGTGACTTGGAGCACTTGGACGATGGCGATGATAGC TTCAGTGCCTTTGAGCGCATGTGCGACAAAACCGGTTCCGATCCGGATAG CACTCTTTTCCAGTACCTGCACAGCGAGGACCGGAGTCAGGTGATGGCCA GGGCTAGGGATCATAGCACCGACGATCAGAAAGAGATCGATGCACTGCGT CGCATGCTAGAGGCAGTGGGTACAGAAGACGATCTATTGGAGAACGAAAG TCCCGTCAAGGGGGCGGAGTGCACTCACCTGGAGGACATTGAGGCGCCGT CGCGCTTTTGGGACAACACCCTGGCCGGAATGGACGAGACCTCATCCGAC TCTGGGCTGACTCCTAAAGCATTGACCAAGGTTTCGCCTGTCAAAATGGT GGGGCTGCTTCGCCCCTCAACCATCATCGAAGACAGCGAACTGGAGTCGT CTGATGTGTCTTCACACACAAGCTTCCAAAGCGCTCGCACCCTAAAGACA AATGCATCTAGTTCTTACGAAACAGCCACGGATACTTCCCTCAGTGGAAC GCTCCTAAACGTCGACGAATTGTTTTACGCCGCAATTGCCAAGGCCAAGC CACCAGGAATGTCCAAGGGAGAGGAGCTGGAGCTCTTAAGCGATCTTCAT GGCAGTCTTAGAGAGCTGGCCTCACTTCCGAAGGATGAGGTCGAGGAGGA AGAGGACGATATAGAGGATACAATAATCGAGCTATCCTCTTCTGACGATG AAGAAGTGCAGCTAGTTCCAGAAGTAAAACAAGAAGACACGTCCCGTGTG TCCTCAGTCCACGGAAAAGATCACACTGAGCAGAAACCAGCGGAGAAGAG CGTTGAAAATAAGGAAAATTCGTTGCATTTCAATGATACCATGGAAGAAA TGGAGTACATGATGCAAAAGGGTATGGAGTACATGGCAGGTGGGGCTCCT TCAGTCGCCGCAGTCAAGGCAGATTGCCCTGTGCTGCCCAAGACCAAACA AAGCACGTTCGTTGTTTCACCGAAGCCGGAACCAAAATCACCGGCTGTAG CCTTTTTGCAGCCATCAATTCCGCTGCGGTCATCTAATCAGCCACAAACA GTTGTAGGTTCATCTAGCACGGGTAGAAAGCCGCTCAATGTCGGCCTCAC CATGGAGTGGACCAAAAAGAAATTTTTCAGTGCAGCCTCTGGTATTCCTC AGCGTCGCCAAAATCAGATAAAGCAGCCATACGCCAACATAGTCAGTCCC ATACGCACCTACACCCAGAAGTCTGGTACTGCTCCGCTAATGAGTACATT CCGTCCAACGAGTTCTGATATGCTATCTACACTGGCCATCAGTGAGTTGG AGCAGGAGTCTCGCTTGTGTCATCCTAAAGCACTTTTCGCAACAAAGGAC GAAACACCCAAGTCCAGTGAAGCGGAATCTTTAATTATCAATGGAATCGA TTCAGCCGCTGATCTGCTTCCCAAAAAGGCTTACATATCTTCCGAAATCA AGCATGTGGTTGATGAACGAACTCCTTTGCCCATGCCGAAGGTACCTCAA ATTCAAAAATACCTCAACTCCGCCGTGGAGCCTACTGTTATGCGCCACGA TGGCAAAATGAAAATGCCCGGCGAGGCAGTCCGCAATCCGTCGTCTTCGC ATATCCCACGACGCGCCAATCACAGCCTGGCTGATCTGTCGCTCGCCTCA GGCGACGTGTCCTTATACACAATAAGAGATGCCCAAAAGTTTTAAGGCCC ATAAAAGTACTTCACGCTCCTTGACTAAATATTGCAACGATAATAAATGT ATTGTGTAACTAGTGCTAGTAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 6960977..6962638 | 1707..46 | 8295 | 99.9 | Minus |
chr2L | 23010047 | chr2L | 6960600..6960914 | 2020..1706 | 1575 | 100 | Minus |
chr2L | 23010047 | chr2L | 6962717..6962760 | 45..2 | 220 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 6961893..6963554 | 1707..46 | 8310 | 100 | Minus |
2L | 23513712 | 2L | 6961513..6961830 | 2023..1706 | 1590 | 100 | Minus |
2L | 23513712 | 2L | 6963633..6963676 | 45..2 | 220 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 6960600..6960914 | 1706..2020 | 100 | <- | Minus |
chr2L | 6960979..6962638 | 46..1705 | 99 | <- | Minus |
chr2L | 6962717..6962760 | 1..45 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sip2-RC | 1..1923 | 23..1945 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sip2-RC | 1..1923 | 23..1945 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sip2-RC | 1..1923 | 23..1945 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sip2-RC | 1..2019 | 2..2020 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sip2-RC | 1..2019 | 2..2020 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sip2-RC | 1..2019 | 2..2020 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6961516..6961830 | 1706..2020 | 100 | <- | Minus |
2L | 6961895..6963554 | 46..1705 | 100 | <- | Minus |
2L | 6963633..6963676 | 1..45 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6961516..6961830 | 1706..2020 | 100 | <- | Minus |
2L | 6961895..6963554 | 46..1705 | 100 | <- | Minus |
2L | 6963633..6963676 | 1..45 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6961516..6961830 | 1706..2020 | 100 | <- | Minus |
2L | 6961895..6963554 | 46..1705 | 100 | <- | Minus |
2L | 6963633..6963676 | 1..45 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 6961516..6961830 | 1706..2020 | 100 | <- | Minus |
arm_2L | 6961895..6963554 | 46..1705 | 100 | <- | Minus |
arm_2L | 6963633..6963676 | 1..45 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6961516..6961830 | 1706..2020 | 100 | <- | Minus |
2L | 6961895..6963554 | 46..1705 | 100 | <- | Minus |
2L | 6963633..6963676 | 1..45 | 97 | Minus |
Translation from 0 to 1944
> RH44661.hyp TFKQATCMSKLLEKHLPKKPVKMDETKDMRYSLEIDEDLRRPLEARAKKV LAVNSASQRTVNLGEDTMYEAGDLEHLDDGDDSFSAFERMCDKTGSDPDS TLFQYLHSEDRSQVMARARDHSTDDQKEIDALRRMLEAVGTEDDLLENES PVKGAECTHLEDIEAPSRFWDNTLAGMDETSSDSGLTPKALTKVSPVKMV GLLRPSTIIEDSELESSDVSSHTSFQSARTLKTNASSSYETATDTSLSGT LLNVDELFYAAIAKAKPPGMSKGEELELLSDLHGSLRELASLPKDEVEEE EDDIEDTIIELSSSDDEEVQLVPEVKQEDTSRVSSVHGKDHTEQKPAEKS VENKENSLHFNDTMEEMEYMMQKGMEYMAGGAPSVAAVKADCPVLPKTKQ STFVVSPKPEPKSPAVAFLQPSIPLRSSNQPQTVVGSSSTGRKPLNVGLT MEWTKKKFFSAASGIPQRRQNQIKQPYANIVSPIRTYTQKSGTAPLMSTF RPTSSDMLSTLAISELEQESRLCHPKALFATKDETPKSSEAESLIINGID SAADLLPKKAYISSEIKHVVDERTPLPMPKVPQIQKYLNSAVEPTVMRHD GKMKMPGEAVRNPSSSHIPRRANHSLADLSLASGDVSLYTIRDAQKF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
sip2-PC | 640 | CG9188-PC | 1..640 | 8..647 | 3244 | 100 | Plus |
sip2-PB | 657 | CG9188-PB | 21..657 | 11..647 | 3210 | 99.4 | Plus |
sip2-PE | 625 | CG9188-PE | 1..625 | 23..647 | 3167 | 100 | Plus |
sip2-PD | 625 | CG9188-PD | 1..625 | 23..647 | 3167 | 100 | Plus |
sip2-PA | 625 | CG9188-PA | 1..625 | 23..647 | 3167 | 100 | Plus |
Translation from 1 to 1944
> RH44661.pep TFKQATCMSKLLEKHLPKKPVKMDETKDMRYSLEIDEDLRRPLEARAKKV LAVNSASQRTVNLGEDTMYEAGDLEHLDDGDDSFSAFERMCDKTGSDPDS TLFQYLHSEDRSQVMARARDHSTDDQKEIDALRRMLEAVGTEDDLLENES PVKGAECTHLEDIEAPSRFWDNTLAGMDETSSDSGLTPKALTKVSPVKMV GLLRPSTIIEDSELESSDVSSHTSFQSARTLKTNASSSYETATDTSLSGT LLNVDELFYAAIAKAKPPGMSKGEELELLSDLHGSLRELASLPKDEVEEE EDDIEDTIIELSSSDDEEVQLVPEVKQEDTSRVSSVHGKDHTEQKPAEKS VENKENSLHFNDTMEEMEYMMQKGMEYMAGGAPSVAAVKADCPVLPKTKQ STFVVSPKPEPKSPAVAFLQPSIPLRSSNQPQTVVGSSSTGRKPLNVGLT MEWTKKKFFSAASGIPQRRQNQIKQPYANIVSPIRTYTQKSGTAPLMSTF RPTSSDMLSTLAISELEQESRLCHPKALFATKDETPKSSEAESLIINGID SAADLLPKKAYISSEIKHVVDERTPLPMPKVPQIQKYLNSAVEPTVMRHD GKMKMPGEAVRNPSSSHIPRRANHSLADLSLASGDVSLYTIRDAQKF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14462-PA | 669 | GF14462-PA | 21..669 | 11..647 | 2124 | 67.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23562-PA | 655 | GG23562-PA | 21..655 | 11..647 | 2846 | 87.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13579-PA | 688 | GH13579-PA | 7..688 | 2..647 | 1127 | 43.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
sip2-PC | 640 | CG9188-PC | 1..640 | 8..647 | 3244 | 100 | Plus |
sip2-PB | 657 | CG9188-PB | 21..657 | 11..647 | 3210 | 99.4 | Plus |
sip2-PE | 625 | CG9188-PE | 1..625 | 23..647 | 3167 | 100 | Plus |
sip2-PD | 625 | CG9188-PD | 1..625 | 23..647 | 3167 | 100 | Plus |
sip2-PA | 625 | CG9188-PA | 1..625 | 23..647 | 3167 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24183-PA | 648 | GI24183-PA | 16..648 | 10..647 | 997 | 42.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25594-PA | 641 | GL25594-PA | 21..638 | 11..647 | 1685 | 58.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21599-PA | 641 | GA21599-PA | 21..638 | 11..647 | 1680 | 58.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13688-PA | 638 | GM13688-PA | 1..638 | 8..647 | 3130 | 95.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21452-PA | 666 | GJ21452-PA | 13..666 | 2..647 | 1280 | 46.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK18101-PA | 669 | GK18101-PA | 93..669 | 81..647 | 1053 | 44.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\sip2-PA | 655 | GE18386-PA | 21..655 | 11..647 | 2785 | 85.2 | Plus |