Clone RH44661 Report

Search the DGRC for RH44661

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:446
Well:61
Vector:pFlc-1
Associated Gene/Transcriptsip2-RC
Protein status:RH44661.pep: gold
Sequenced Size:2035

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
sip2-RD 2010-12-03 Manual selection by Ken Wan

Clone Sequence Records

RH44661.complete Sequence

2035 bp assembled on 2011-06-21

GenBank Submission: BT128757.1

> RH44661.complete
GACTTTCAAACAAGCCACCTGCATGTCAAAATTGTTAGAGAAACACTTGC
CGAAAAAGCCCGTGAAAATGGACGAAACGAAGGATATGCGCTATAGTTTG
GAGATCGACGAGGATTTGAGGAGACCCTTGGAGGCGCGGGCCAAGAAAGT
TCTGGCCGTTAATTCTGCCAGTCAAAGGACTGTTAATCTCGGCGAGGATA
CTATGTACGAGGCAGGTGACTTGGAGCACTTGGACGATGGCGATGATAGC
TTCAGTGCCTTTGAGCGCATGTGCGACAAAACCGGTTCCGATCCGGATAG
CACTCTTTTCCAGTACCTGCACAGCGAGGACCGGAGTCAGGTGATGGCCA
GGGCTAGGGATCATAGCACCGACGATCAGAAAGAGATCGATGCACTGCGT
CGCATGCTAGAGGCAGTGGGTACAGAAGACGATCTATTGGAGAACGAAAG
TCCCGTCAAGGGGGCGGAGTGCACTCACCTGGAGGACATTGAGGCGCCGT
CGCGCTTTTGGGACAACACCCTGGCCGGAATGGACGAGACCTCATCCGAC
TCTGGGCTGACTCCTAAAGCATTGACCAAGGTTTCGCCTGTCAAAATGGT
GGGGCTGCTTCGCCCCTCAACCATCATCGAAGACAGCGAACTGGAGTCGT
CTGATGTGTCTTCACACACAAGCTTCCAAAGCGCTCGCACCCTAAAGACA
AATGCATCTAGTTCTTACGAAACAGCCACGGATACTTCCCTCAGTGGAAC
GCTCCTAAACGTCGACGAATTGTTTTACGCCGCAATTGCCAAGGCCAAGC
CACCAGGAATGTCCAAGGGAGAGGAGCTGGAGCTCTTAAGCGATCTTCAT
GGCAGTCTTAGAGAGCTGGCCTCACTTCCGAAGGATGAGGTCGAGGAGGA
AGAGGACGATATAGAGGATACAATAATCGAGCTATCCTCTTCTGACGATG
AAGAAGTGCAGCTAGTTCCAGAAGTAAAACAAGAAGACACGTCCCGTGTG
TCCTCAGTCCACGGAAAAGATCACACTGAGCAGAAACCAGCGGAGAAGAG
CGTTGAAAATAAGGAAAATTCGTTGCATTTCAATGATACCATGGAAGAAA
TGGAGTACATGATGCAAAAGGGTATGGAGTACATGGCAGGTGGGGCTCCT
TCAGTCGCCGCAGTCAAGGCAGATTGCCCTGTGCTGCCCAAGACCAAACA
AAGCACGTTCGTTGTTTCACCGAAGCCGGAACCAAAATCACCGGCTGTAG
CCTTTTTGCAGCCATCAATTCCGCTGCGGTCATCTAATCAGCCACAAACA
GTTGTAGGTTCATCTAGCACGGGTAGAAAGCCGCTCAATGTCGGCCTCAC
CATGGAGTGGACCAAAAAGAAATTTTTCAGTGCAGCCTCTGGTATTCCTC
AGCGTCGCCAAAATCAGATAAAGCAGCCATACGCCAACATAGTCAGTCCC
ATACGCACCTACACCCAGAAGTCTGGTACTGCTCCGCTAATGAGTACATT
CCGTCCAACGAGTTCTGATATGCTATCTACACTGGCCATCAGTGAGTTGG
AGCAGGAGTCTCGCTTGTGTCATCCTAAAGCACTTTTCGCAACAAAGGAC
GAAACACCCAAGTCCAGTGAAGCGGAATCTTTAATTATCAATGGAATCGA
TTCAGCCGCTGATCTGCTTCCCAAAAAGGCTTACATATCTTCCGAAATCA
AGCATGTGGTTGATGAACGAACTCCTTTGCCCATGCCGAAGGTACCTCAA
ATTCAAAAATACCTCAACTCCGCCGTGGAGCCTACTGTTATGCGCCACGA
TGGCAAAATGAAAATGCCCGGCGAGGCAGTCCGCAATCCGTCGTCTTCGC
ATATCCCACGACGCGCCAATCACAGCCTGGCTGATCTGTCGCTCGCCTCA
GGCGACGTGTCCTTATACACAATAAGAGATGCCCAAAAGTTTTAAGGCCC
ATAAAAGTACTTCACGCTCCTTGACTAAATATTGCAACGATAATAAATGT
ATTGTGTAACTAGTGCTAGTAAAAAAAAAAAAAAA

RH44661.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 10:43:52
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 6960977..6962638 1707..46 8295 99.9 Minus
chr2L 23010047 chr2L 6960600..6960914 2020..1706 1575 100 Minus
chr2L 23010047 chr2L 6962717..6962760 45..2 220 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 10:43:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6961893..6963554 1707..46 8310 100 Minus
2L 23513712 2L 6961513..6961830 2023..1706 1590 100 Minus
2L 23513712 2L 6963633..6963676 45..2 220 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:12:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6961893..6963554 1707..46 8310 100 Minus
2L 23513712 2L 6961513..6961830 2023..1706 1590 100 Minus
2L 23513712 2L 6963633..6963676 45..2 220 100 Minus
Blast to na_te.dros performed on 2019-03-15 10:43:51 has no hits.

RH44661.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 10:44:48 Download gff for RH44661.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 6960600..6960914 1706..2020 100 <- Minus
chr2L 6960979..6962638 46..1705 99 <- Minus
chr2L 6962717..6962760 1..45 97   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-06-21 09:19:08 Download gff for RH44661.complete
Subject Subject Range Query Range Percent Splice Strand
sip2-RC 1..1923 23..1945 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:24:35 Download gff for RH44661.complete
Subject Subject Range Query Range Percent Splice Strand
sip2-RC 1..1923 23..1945 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:11:18 Download gff for RH44661.complete
Subject Subject Range Query Range Percent Splice Strand
sip2-RC 1..1923 23..1945 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-21 09:19:07 Download gff for RH44661.complete
Subject Subject Range Query Range Percent Splice Strand
sip2-RC 1..2019 2..2020 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:24:35 Download gff for RH44661.complete
Subject Subject Range Query Range Percent Splice Strand
sip2-RC 1..2019 2..2020 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:11:18 Download gff for RH44661.complete
Subject Subject Range Query Range Percent Splice Strand
sip2-RC 1..2019 2..2020 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:44:48 Download gff for RH44661.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6961516..6961830 1706..2020 100 <- Minus
2L 6961895..6963554 46..1705 100 <- Minus
2L 6963633..6963676 1..45 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:44:48 Download gff for RH44661.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6961516..6961830 1706..2020 100 <- Minus
2L 6961895..6963554 46..1705 100 <- Minus
2L 6963633..6963676 1..45 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:44:48 Download gff for RH44661.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6961516..6961830 1706..2020 100 <- Minus
2L 6961895..6963554 46..1705 100 <- Minus
2L 6963633..6963676 1..45 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:24:35 Download gff for RH44661.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6961516..6961830 1706..2020 100 <- Minus
arm_2L 6961895..6963554 46..1705 100 <- Minus
arm_2L 6963633..6963676 1..45 97   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:08:46 Download gff for RH44661.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6961516..6961830 1706..2020 100 <- Minus
2L 6961895..6963554 46..1705 100 <- Minus
2L 6963633..6963676 1..45 97   Minus

RH44661.hyp Sequence

Translation from 0 to 1944

> RH44661.hyp
TFKQATCMSKLLEKHLPKKPVKMDETKDMRYSLEIDEDLRRPLEARAKKV
LAVNSASQRTVNLGEDTMYEAGDLEHLDDGDDSFSAFERMCDKTGSDPDS
TLFQYLHSEDRSQVMARARDHSTDDQKEIDALRRMLEAVGTEDDLLENES
PVKGAECTHLEDIEAPSRFWDNTLAGMDETSSDSGLTPKALTKVSPVKMV
GLLRPSTIIEDSELESSDVSSHTSFQSARTLKTNASSSYETATDTSLSGT
LLNVDELFYAAIAKAKPPGMSKGEELELLSDLHGSLRELASLPKDEVEEE
EDDIEDTIIELSSSDDEEVQLVPEVKQEDTSRVSSVHGKDHTEQKPAEKS
VENKENSLHFNDTMEEMEYMMQKGMEYMAGGAPSVAAVKADCPVLPKTKQ
STFVVSPKPEPKSPAVAFLQPSIPLRSSNQPQTVVGSSSTGRKPLNVGLT
MEWTKKKFFSAASGIPQRRQNQIKQPYANIVSPIRTYTQKSGTAPLMSTF
RPTSSDMLSTLAISELEQESRLCHPKALFATKDETPKSSEAESLIINGID
SAADLLPKKAYISSEIKHVVDERTPLPMPKVPQIQKYLNSAVEPTVMRHD
GKMKMPGEAVRNPSSSHIPRRANHSLADLSLASGDVSLYTIRDAQKF*

RH44661.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:13:49
Subject Length Description Subject Range Query Range Score Percent Strand
sip2-PC 640 CG9188-PC 1..640 8..647 3244 100 Plus
sip2-PB 657 CG9188-PB 21..657 11..647 3210 99.4 Plus
sip2-PE 625 CG9188-PE 1..625 23..647 3167 100 Plus
sip2-PD 625 CG9188-PD 1..625 23..647 3167 100 Plus
sip2-PA 625 CG9188-PA 1..625 23..647 3167 100 Plus

RH44661.pep Sequence

Translation from 1 to 1944

> RH44661.pep
TFKQATCMSKLLEKHLPKKPVKMDETKDMRYSLEIDEDLRRPLEARAKKV
LAVNSASQRTVNLGEDTMYEAGDLEHLDDGDDSFSAFERMCDKTGSDPDS
TLFQYLHSEDRSQVMARARDHSTDDQKEIDALRRMLEAVGTEDDLLENES
PVKGAECTHLEDIEAPSRFWDNTLAGMDETSSDSGLTPKALTKVSPVKMV
GLLRPSTIIEDSELESSDVSSHTSFQSARTLKTNASSSYETATDTSLSGT
LLNVDELFYAAIAKAKPPGMSKGEELELLSDLHGSLRELASLPKDEVEEE
EDDIEDTIIELSSSDDEEVQLVPEVKQEDTSRVSSVHGKDHTEQKPAEKS
VENKENSLHFNDTMEEMEYMMQKGMEYMAGGAPSVAAVKADCPVLPKTKQ
STFVVSPKPEPKSPAVAFLQPSIPLRSSNQPQTVVGSSSTGRKPLNVGLT
MEWTKKKFFSAASGIPQRRQNQIKQPYANIVSPIRTYTQKSGTAPLMSTF
RPTSSDMLSTLAISELEQESRLCHPKALFATKDETPKSSEAESLIINGID
SAADLLPKKAYISSEIKHVVDERTPLPMPKVPQIQKYLNSAVEPTVMRHD
GKMKMPGEAVRNPSSSHIPRRANHSLADLSLASGDVSLYTIRDAQKF*

RH44661.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 19:02:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14462-PA 669 GF14462-PA 21..669 11..647 2124 67.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:02:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23562-PA 655 GG23562-PA 21..655 11..647 2846 87.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 19:02:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13579-PA 688 GH13579-PA 7..688 2..647 1127 43.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:22:55
Subject Length Description Subject Range Query Range Score Percent Strand
sip2-PC 640 CG9188-PC 1..640 8..647 3244 100 Plus
sip2-PB 657 CG9188-PB 21..657 11..647 3210 99.4 Plus
sip2-PE 625 CG9188-PE 1..625 23..647 3167 100 Plus
sip2-PD 625 CG9188-PD 1..625 23..647 3167 100 Plus
sip2-PA 625 CG9188-PA 1..625 23..647 3167 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 19:02:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24183-PA 648 GI24183-PA 16..648 10..647 997 42.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 19:02:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25594-PA 641 GL25594-PA 21..638 11..647 1685 58.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:02:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21599-PA 641 GA21599-PA 21..638 11..647 1680 58.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:02:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13688-PA 638 GM13688-PA 1..638 8..647 3130 95.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 19:02:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21452-PA 666 GJ21452-PA 13..666 2..647 1280 46.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 19:02:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18101-PA 669 GK18101-PA 93..669 81..647 1053 44.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:02:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\sip2-PA 655 GE18386-PA 21..655 11..647 2785 85.2 Plus