BDGP Sequence Production Resources |
Search the DGRC for RH44664
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 446 |
Well: | 64 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG3560-RA |
Protein status: | RH44664.pep: gold |
Preliminary Size: | 445 |
Sequenced Size: | 484 |
Gene | Date | Evidence |
---|---|---|
CG3560 | 2002-01-01 | Sim4 clustering to Release 2 |
CG3560 | 2002-04-26 | Blastp of sequenced clone |
CG3560 | 2008-04-29 | Release 5.5 accounting |
CG3560 | 2008-08-15 | Release 5.9 accounting |
CG3560 | 2008-12-18 | 5.12 accounting |
484 bp (484 high quality bases) assembled on 2002-04-26
GenBank Submission: AY113594
> RH44664.complete CACCTCATACCTAAAATAAAAAGGCTGGAGGAATATCTCTTTCCCGACTT CTGATTTTACGTAAACCATGTCGAACTATATTGCCAGAAAGGGACCCGCA GTTCTCTCAAATCTGGGCAGATGGGCCTACAATCTCTCCGGATTCAACCA ATACGGTCTGCATCGCGATGATTGTCTGTATGAGAACGAGGATGTGAAGG AGGCCGTGCGCCGATTGCCCAGGAAGCTGTACGATGAGCGTAACTACCGC ATCATGAGGGCCCTCCATCTGTCCATGACCAAGACCATTCTGCCCAAGGA GCAGTGGACCAAGTACGAGGAGGACGTCAAGTATCTGGAACCCTACCTCA AGGAGGTCGTGAAGGAGCGCGAGGAGCGTGAGGACTGGGAAAAGATCCAC TAAACGCGCCACTAAATCCCTCTACTTTGGACTTGTAAATGTTGAAATAC ATAGCTTAGATAAATACCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG3560-RA | 569 | CG3560-RA | 59..527 | 4..472 | 2345 | 100 | Plus |
CG32576-RA | 1792 | CG32576-RA | 681..998 | 472..155 | 1590 | 100 | Minus |
CG17856-RA | 420 | CG17856-RA | 3..324 | 67..388 | 650 | 80.1 | Plus |
CG32576-RA | 1792 | CG32576-RA | 1224..1327 | 107..4 | 520 | 100 | Minus |
CG32576-RA | 1792 | CG32576-RA | 1059..1108 | 157..108 | 250 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 16176389..16176702 | 155..468 | 1555 | 99.7 | Plus |
chr3R | 27901430 | chr3R | 24117060..24117386 | 62..388 | 660 | 80.1 | Plus |
chrX | 22417052 | chrX | 16176060..16176163 | 4..107 | 520 | 100 | Plus |
chrX | 22417052 | chrX | 16176279..16176328 | 108..157 | 250 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 16286675..16286992 | 155..472 | 1590 | 100 | Plus |
3R | 32079331 | 3R | 28294128..28294454 | 62..388 | 660 | 80.1 | Plus |
X | 23542271 | X | 16286346..16286449 | 4..107 | 520 | 100 | Plus |
X | 23542271 | X | 16286565..16286614 | 108..157 | 250 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 16294773..16295090 | 155..472 | 1590 | 100 | Plus |
3R | 31820162 | 3R | 28034959..28035285 | 62..388 | 660 | 80.1 | Plus |
X | 23527363 | X | 16294444..16294547 | 4..107 | 520 | 100 | Plus |
X | 23527363 | X | 16294663..16294712 | 108..157 | 250 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 16176056..16176163 | 1..107 | 97 | -> | Plus |
chrX | 16176279..16176326 | 108..155 | 100 | -> | Plus |
chrX | 16176390..16176702 | 156..468 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3560-RA | 1..336 | 68..403 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3560-RA | 1..336 | 68..403 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3560-RA | 1..336 | 68..403 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3560-RA | 1..336 | 68..403 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3560-RA | 1..336 | 68..403 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3560-RA | 1..469 | 3..468 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3560-RA | 55..523 | 1..468 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3560-RA | 55..523 | 1..468 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3560-RA | 1..469 | 3..468 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3560-RA | 55..523 | 1..468 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16286342..16286449 | 1..107 | 97 | -> | Plus |
X | 16286565..16286612 | 108..155 | 100 | -> | Plus |
X | 16286676..16286988 | 156..468 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16286342..16286449 | 1..107 | 97 | -> | Plus |
X | 16286565..16286612 | 108..155 | 100 | -> | Plus |
X | 16286676..16286988 | 156..468 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16286342..16286449 | 1..107 | 97 | -> | Plus |
X | 16286565..16286612 | 108..155 | 100 | -> | Plus |
X | 16286676..16286988 | 156..468 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 16180375..16180482 | 1..107 | 97 | -> | Plus |
arm_X | 16180598..16180645 | 108..155 | 100 | -> | Plus |
arm_X | 16180709..16181021 | 156..468 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16294774..16295086 | 156..468 | 100 | Plus | |
X | 16294440..16294547 | 1..107 | 97 | -> | Plus |
X | 16294663..16294710 | 108..155 | 100 | -> | Plus |
Translation from 67 to 402
> RH44664.pep MSNYIARKGPAVLSNLGRWAYNLSGFNQYGLHRDDCLYENEDVKEAVRRL PRKLYDERNYRIMRALHLSMTKTILPKEQWTKYEEDVKYLEPYLKEVVKE REEREDWEKIH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF19659-PA | 111 | GF19659-PA | 1..109 | 1..109 | 517 | 85.3 | Plus |
Dana\GF19635-PA | 111 | GF19635-PA | 1..111 | 1..111 | 501 | 93.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17947-PA | 111 | GG17947-PA | 1..111 | 1..111 | 571 | 97.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12559-PA | 111 | GH12559-PA | 1..111 | 1..111 | 484 | 89.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
UQCR-14-PA | 111 | CG3560-PA | 1..111 | 1..111 | 598 | 100 | Plus |
UQCR-14L-PA | 111 | CG17856-PA | 1..111 | 1..111 | 528 | 85.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11212-PA | 111 | GI11212-PA | 1..111 | 1..111 | 540 | 91 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21337-PA | 111 | GL21337-PA | 1..111 | 1..111 | 480 | 89.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17519-PA | 111 | GA17519-PA | 1..111 | 1..111 | 477 | 88.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13417-PA | 111 | GM13417-PA | 1..111 | 1..111 | 582 | 100 | Plus |
Dsec\GM16378-PA | 111 | GM16378-PA | 1..111 | 1..111 | 516 | 85.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17271-PA | 111 | GD17271-PA | 1..111 | 1..111 | 582 | 100 | Plus |
Dsim\GD21370-PA | 111 | GD21370-PA | 1..111 | 1..111 | 516 | 85.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18506-PA | 111 | GJ18506-PA | 1..111 | 1..111 | 523 | 88.3 | Plus |
Translation from 67 to 402
> RH44664.hyp MSNYIARKGPAVLSNLGRWAYNLSGFNQYGLHRDDCLYENEDVKEAVRRL PRKLYDERNYRIMRALHLSMTKTILPKEQWTKYEEDVKYLEPYLKEVVKE REEREDWEKIH*