Clone RH44722 Report

Search the DGRC for RH44722

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:447
Well:22
Vector:pFlc-1
Associated Gene/TranscriptCG17065-RA
Protein status:RH44722.pep: gold
Preliminary Size:1332
Sequenced Size:1573

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17065 2002-01-01 Sim4 clustering to Release 2
CG17065 2002-02-27 Blastp of sequenced clone
CG17065 2003-01-01 Sim4 clustering to Release 3
CG17065 2008-04-29 Release 5.5 accounting
CG17065 2008-08-15 Release 5.9 accounting
CG17065 2008-12-18 5.12 accounting

Clone Sequence Records

RH44722.complete Sequence

1573 bp (1573 high quality bases) assembled on 2002-02-27

GenBank Submission: AY089672

> RH44722.complete
GTCAGTTTAGTTTACGCTCCCCTGTTTATTTGCGAGCCATCGCTCATTCC
GCCCGCAACGCCAGCCCCGCCCCCTGCGCTCCGCAGCCCCCACCAATGGA
CGTTCGGATTAAGTGCAACAGCGAGGAGCCAGAGTCTCCGGAGCAGAAGA
TCCTGGCGAGCAGCCAGCGCCTGCTGCAGTTCACCAACTGCCGCCTTGTA
CGCGACCACCGGATCATCCACGACGATCTGTGGGTTCGCGACGGTCGGAT
CGTGAACCCAGAGCCTGTGTTCTTCGACGAGCGGACCAAGGCCCACTGTC
GCATCGACTGCGGGGGCGCCATCATCGCGCCCGGCTACATCGACCTCCAG
ATCAATGGTGGCTATGGCGTGGACTTCTCGTACGACACGGAGACCATCGA
GGAGGGCGTGGCCACGGTGGCACGCGGCCTGGTCAAGAGCGGAGTCACCT
CCTTCTGTCCCACGCTGGTGACCTCGCCCAGCGACAGCTACCACACCATC
CTGCCGCGCATTCCCGCAGAGGTTCCCAAGGGCGCCGGCATACTGGGCAT
CCATGCGGAGGGTCCGTTTATCAATCCGCAGAAAAAGGGCGCGCATCCGG
AGCACTGCATCCAGACCATTGATAAGGGACTCAGCACGCTGAAGGAGACG
TACGGCTCGCTGGAACGCATTAAAATCATCACCCTGGCGCCGGAGAAGGT
CACCGACCCGGAGGTGATTGGCCAGCTGGTGGAGCGTGGCATCACCGTGG
CCCTGGGCCACTCGATGGCCTCGCTAAGCGACGGAGAGAGGGCCGTGCAG
CAGGGCGCCACGCTGATCACGCATCTGTTCAACGCCATGCTGCCGTTCCA
TCACCGCGATCCCGGCCTGGTGGGACTGCTGGCCTCGGACGCAGTGCCGC
ACGGTAGGACCGTGTACTTCGGCATCATCTCGGACGGAGTGCACACTCAT
CCGGCGGCACTGAGGATCGCCTACCGCACGCATCCGCAGGGCCTGATCCT
GGTGACGGACGCCATATCGGCGCTGGGCCTCGAGGAGGGTGTCCACCACA
TCGGACAGCTGCCGCTGCAGGTTAAGCAGGGCAAGGCGTTCATCGCAGGC
ACAGAGACGCTGTGCGGCAGCATCGCCCCGATGGACGAGTGCGTGCGGAT
CTTCCAGAAGGCGACCGACTGCTCCGTGGTCTATGCCATCGAGGCGGCCA
CCTTGCATCCAGCACAGTGCCTGAAGATCGAAAAGCAGAAGGGCACCCTG
GACTTTGGCTCGGACGCGGACTTCGTTCTCCTGGACGACCAGCTCCGGGT
GCTATCCACCTGGATCGCTGGCGTATGTGTTCATAGGACTGTCAAGTAGC
GCATCGAATGTGCAACTGTTGCAATTGTTTTTATTTACCTGATGCAGGAT
GCAGGATTCTACACCGAAGATTCTCCAAATAAATTGTTAAACTTATACAT
TCCAATTGAAGGAGCTTGAGATTCTTGTGAGTGCAGCCAAGGATGTTCAA
ATGAATTGTTTAACGATGATTGTTTGCCATTTGAAATAAGGAATCACTCA
CTGGTTTAAAAAAAAAAAAAAAA

RH44722.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:22:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG17065-RA 1755 CG17065-RA 188..1744 2..1558 7785 100 Plus
CG17065-RB 1598 CG17065-RB 665..1598 624..1557 4670 100 Plus
CG17065-RB 1598 CG17065-RB 1..625 2..626 3125 100 Plus
Rab10-RA 2392 Rab10-RA 2286..2392 1558..1452 535 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:05:28
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 20120657..20121200 1167..624 2705 99.8 Minus
chrX 22417052 chrX 20120217..20120607 1557..1167 1955 100 Minus
chrX 22417052 chrX 20122298..20122656 360..2 1780 99.7 Minus
chrX 22417052 chrX 20121288..20121558 627..357 1355 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:30:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:05:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20255132..20255675 1167..624 2720 100 Minus
X 23542271 X 20254691..20255082 1558..1167 1960 100 Minus
X 23542271 X 20256773..20257131 360..2 1795 100 Minus
X 23542271 X 20255763..20256033 627..357 1355 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:52:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 20240223..20240766 1167..624 2720 100 Minus
X 23527363 X 20239782..20240173 1558..1167 1960 100 Minus
X 23527363 X 20241864..20242222 360..2 1795 100 Minus
X 23527363 X 20240854..20241124 627..357 1355 100 Minus
Blast to na_te.dros performed on 2019-03-16 05:05:27 has no hits.

RH44722.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:06:36 Download gff for RH44722.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 20120217..20120606 1168..1557 100 <- Minus
chrX 20120657..20121197 627..1167 99 <- Minus
chrX 20121289..20121557 358..626 100 <- Minus
chrX 20122301..20122655 1..357 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:47:20 Download gff for RH44722.complete
Subject Subject Range Query Range Percent Splice Strand
CG17065-RA 1..1254 96..1349 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:32:28 Download gff for RH44722.complete
Subject Subject Range Query Range Percent Splice Strand
CG17065-RA 1..1254 96..1349 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:05:52 Download gff for RH44722.complete
Subject Subject Range Query Range Percent Splice Strand
CG17065-RA 1..1254 96..1349 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:05:20 Download gff for RH44722.complete
Subject Subject Range Query Range Percent Splice Strand
CG17065-RA 1..1254 96..1349 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:56:41 Download gff for RH44722.complete
Subject Subject Range Query Range Percent Splice Strand
CG17065-RA 1..1254 96..1349 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:58:23 Download gff for RH44722.complete
Subject Subject Range Query Range Percent Splice Strand
CG17065-RA 1..1556 2..1557 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:32:28 Download gff for RH44722.complete
Subject Subject Range Query Range Percent Splice Strand
CG17065-RA 1..1556 2..1557 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:05:52 Download gff for RH44722.complete
Subject Subject Range Query Range Percent Splice Strand
CG17065-RA 1..1556 2..1557 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:05:21 Download gff for RH44722.complete
Subject Subject Range Query Range Percent Splice Strand
CG17065-RA 1..1556 2..1557 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:56:41 Download gff for RH44722.complete
Subject Subject Range Query Range Percent Splice Strand
CG17065-RA 1..1556 2..1557 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:06:36 Download gff for RH44722.complete
Subject Subject Range Query Range Percent Splice Strand
X 20254692..20255081 1168..1557 100 <- Minus
X 20255132..20255672 627..1167 100 <- Minus
X 20255764..20256032 358..626 100 <- Minus
X 20256776..20257131 1..357 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:06:36 Download gff for RH44722.complete
Subject Subject Range Query Range Percent Splice Strand
X 20254692..20255081 1168..1557 100 <- Minus
X 20255132..20255672 627..1167 100 <- Minus
X 20255764..20256032 358..626 100 <- Minus
X 20256776..20257131 1..357 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:06:36 Download gff for RH44722.complete
Subject Subject Range Query Range Percent Splice Strand
X 20254692..20255081 1168..1557 100 <- Minus
X 20255132..20255672 627..1167 100 <- Minus
X 20255764..20256032 358..626 100 <- Minus
X 20256776..20257131 1..357 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:05:52 Download gff for RH44722.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20125718..20126107 1168..1557 100 <- Minus
arm_X 20126158..20126698 627..1167 100 <- Minus
arm_X 20126790..20127058 358..626 100 <- Minus
arm_X 20127802..20128157 1..357 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:39:08 Download gff for RH44722.complete
Subject Subject Range Query Range Percent Splice Strand
X 20239783..20240172 1168..1557 100 <- Minus
X 20240223..20240763 627..1167 100 <- Minus
X 20240855..20241123 358..626 100 <- Minus
X 20241867..20242222 1..357 99   Minus

RH44722.hyp Sequence

Translation from 2 to 1348

> RH44722.hyp
QFSLRSPVYLRAIAHSARNASPAPCAPQPPPMDVRIKCNSEEPESPEQKI
LASSQRLLQFTNCRLVRDHRIIHDDLWVRDGRIVNPEPVFFDERTKAHCR
IDCGGAIIAPGYIDLQINGGYGVDFSYDTETIEEGVATVARGLVKSGVTS
FCPTLVTSPSDSYHTILPRIPAEVPKGAGILGIHAEGPFINPQKKGAHPE
HCIQTIDKGLSTLKETYGSLERIKIITLAPEKVTDPEVIGQLVERGITVA
LGHSMASLSDGERAVQQGATLITHLFNAMLPFHHRDPGLVGLLASDAVPH
GRTVYFGIISDGVHTHPAALRIAYRTHPQGLILVTDAISALGLEEGVHHI
GQLPLQVKQGKAFIAGTETLCGSIAPMDECVRIFQKATDCSVVYAIEAAT
LHPAQCLKIEKQKGTLDFGSDADFVLLDDQLRVLSTWIAGVCVHRTVK*

RH44722.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:20:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG17065-PD 417 CG17065-PD 1..417 32..448 2180 100 Plus
CG17065-PA 417 CG17065-PA 1..417 32..448 2180 100 Plus
CG17065-PB 431 CG17065-PB 1..431 32..448 2155 96.8 Plus

RH44722.pep Sequence

Translation from 95 to 1348

> RH44722.pep
MDVRIKCNSEEPESPEQKILASSQRLLQFTNCRLVRDHRIIHDDLWVRDG
RIVNPEPVFFDERTKAHCRIDCGGAIIAPGYIDLQINGGYGVDFSYDTET
IEEGVATVARGLVKSGVTSFCPTLVTSPSDSYHTILPRIPAEVPKGAGIL
GIHAEGPFINPQKKGAHPEHCIQTIDKGLSTLKETYGSLERIKIITLAPE
KVTDPEVIGQLVERGITVALGHSMASLSDGERAVQQGATLITHLFNAMLP
FHHRDPGLVGLLASDAVPHGRTVYFGIISDGVHTHPAALRIAYRTHPQGL
ILVTDAISALGLEEGVHHIGQLPLQVKQGKAFIAGTETLCGSIAPMDECV
RIFQKATDCSVVYAIEAATLHPAQCLKIEKQKGTLDFGSDADFVLLDDQL
RVLSTWIAGVCVHRTVK*

RH44722.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:44:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20445-PA 410 GF20445-PA 14..408 21..415 1912 89.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:44:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18004-PA 417 GG18004-PA 1..417 1..417 2077 93.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:44:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12083-PA 401 GH12083-PA 5..397 22..414 1751 81.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:37:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG17065-PD 417 CG17065-PD 1..417 1..417 2180 100 Plus
CG17065-PA 417 CG17065-PA 1..417 1..417 2180 100 Plus
CG17065-PB 431 CG17065-PB 1..431 1..417 2155 96.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:44:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11091-PA 401 GI11091-PA 6..399 22..415 1692 79.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:44:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12914-PA 342 GL12914-PA 13..342 88..417 1477 83.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:44:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14308-PA 407 GA14308-PA 15..407 25..417 1811 84.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:44:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22684-PA 417 GM22684-PA 1..417 1..417 2150 97.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:44:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15776-PA 406 GJ15776-PA 1..401 3..414 1785 80.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:44:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10075-PA 415 GK10075-PA 22..411 25..414 1773 83.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:44:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15361-PA 419 GE15361-PA 1..419 1..417 2066 93.8 Plus