Clone RH44874 Report

Search the DGRC for RH44874

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:448
Well:74
Vector:pFlc-1
Associated Gene/TranscriptCG15385-RA
Protein status:RH44874.pep: gold
Preliminary Size:1764
Sequenced Size:2652

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15385 2001-12-17 Blastp of sequenced clone
CG15385 2002-01-01 Sim4 clustering to Release 2
CG15385 2003-01-01 Sim4 clustering to Release 3
CG15385 2008-04-29 Release 5.5 accounting
CG15385 2008-08-15 Release 5.9 accounting
CG15385 2008-12-18 5.12 accounting

Clone Sequence Records

RH44874.complete Sequence

2652 bp (2652 high quality bases) assembled on 2001-12-17

GenBank Submission: AY071729

> RH44874.complete
GGTTTTTTCTACACTTAGCATTAAAAAAGCAATCCCCGTGCAGCGGAGCT
CTAGCCTGAAATTTAAGCACTGGATAGGAGTATATCAGAGCTATCGTATC
GACAGAAACCCTCCAGGAGTGCCGCCCAACGAGTTGATGCCGAGGAGCAG
CAGTGGAGCTAGCGGGCAGCAGTTAAGAGCCGGACTTTCTGGCCAGGATG
AGGCTGCTCAAGGAACTGATGCGAGTGGCCACCCAACACAGAGCCTTCTA
CTGCTATGTGCTGCTCAGCGTCTGGATATTCCTTCTTATAGCGGGAATGT
ATCGCTACATGGGCAATGTTGAGTCGACTCCAAGCGGTGGCTCAGTTTTC
GGACCCAGTTCGTCTGGCACCGTCAGTTCCTTGGGCGGCGATAGTTCGCC
ATCTTCCACTGCCCAGCGATTCGCCAAGTACAGAGAACGCTGTGCTCCGT
TGGCTCAGCTGCAGCGTTTGGATGATGGCGGCATCTTGGAGGGTTGGAAG
CTTCAGGGCGTGCTCCTGGTCATCAGGCACGGGGATCGGGGACCCATATC
CCACGTTCGCAGTGCTGGCATCAACTGCGGCGTGAGTGGTGGCTCAGATA
ACTTGGTCAACAGGTATCGCAGTTTTCTGTATAACTCGAGCAGCTCCGCT
TCGGGATCAAATCACATGTACTGGAACAAGGTGGGGCCGTTCCATGGGTT
TCCACTGCTGCCGGCCACAGAACGTGGTTGTCCACTGGGGCAGCTCACCT
ACAAGGGAATCTCGCAGCTGCTACACGTGGGCGACATCATGCACCAGGTC
TATGCTCATCCACTGGGTCTCCTGCTCAAACCGAATCCGAACCGAGCCTC
TGTGGAAACGACGCCCCACACGCTTCTTAATTCGGATGAAGTGGTGGTCT
TCACCACTCGCTATCGTCGCACCTTCCAGTCCGCATTGGCCATGCTGTTC
ACCTTGCTTCCGGCGGACAAGTGGCTGGCTTTGAATGTCCGGGAATCGCA
TAGCATGGCTTTCTGCTTCGGCGAGTGCAGCTGTCCTCAGTCGGCTCTGC
TGCGAAAACGTCTGGAGGCCATGGGTGATAAGCAGCTCCTGAAACGTGGC
GATGTCCTGGATGTGATGCAGTGGATCGGAGGCACCATACTGCAGCACAC
GCCGAATGGCATTAGCAATCCCTTCGAGGTGGTGGATGCCCTTTTGACAG
TTCTATGCCATGACGCCACCTTGCCATGTCGCAGGAAAAAAGCGCTTTCC
ACTCCAAAGCCCCTCAGAAAGAACTCCAATCAGGAACTGGTGGATGTGAT
CAATATAGATCAGGATGAAACAGCTGCCAACTTGATGCAGGAGGCACAAA
CACAGGTGGAACCCGACTCCCCTGAGGTGGAAAATGGGAATCCCTCAGTG
CAGGCGGATGAAGCTCAAGAGGGCTGCGTCGAGCCCAGCCACGTGGATAC
CCTGATGTCCTTTGCGGACGAACTATCGCAACGCTCCGCTGGTCACTCGT
ACTACAAGCTATCCGGATTGCTGCGATCCTACGGAATGATCCGTCACATA
GTCAGCTACATGCTGAAGATGATCTCTGGCGACAGGACGAAGTTTGTCCT
GTACTCTGGACACGACTGCACCATGCAGTATCTTACAGCTGCCCTGGGAA
TCATCACCAACCAGGGCCAAACCATAGCCTATGCCTCCAGACTAGCATTC
GAAGTTTACCGGAGCGACGCTCACACGGATTACTACTTCCGGGTGGTGTA
CAATGGAAAGGATGTCACGCAGCAGATCGATTTCTGCGAGGGAGGCAAAA
GCCTACGGGTCACCAGGGATTCCAGGGGCAACAAAGCCGATCTCTGTCCC
ATCGAGAACATCATTCGCTTCCTGCACGAAGATTACTTCAGTCCGCTGAA
TGCCACCAATTTTAAGGAAGCCTGTGGCTCTGTGAATCCCCCAAAAACTG
GCGAATTTTAGCAGCCCGCCCAGGTGATGAGTAGGAGATCCCTTTTATAA
AACTGTGATAAGTAGTTTAGATGCCACACATGAAAAGAAGAGCACTATGT
CCAGTCTTATCCCGAACTGGAAACGACCGCTTATTAGCGATGTTATCTAA
TTAGTTGGAATTTAGTTAATGCATTCAACTTGTTGATCCACAAATCGAAA
ACGATACATATCAATGGAGCACTTGTTAGACTATAAGAACCTCTTTCTAA
AAATCTAGCAATACGGAAATGAAACTTGATGTCGCAAACATATCAGCTTT
TTGAAGTTTATTATAAAAAAAATCTTAGGAAAACCCTTCCACAAATTTTA
GCATTTATAACATATTTTTATGAACATATCAAAGCAAAGAGTAAAAGAAC
TCTAGGAAGATGCGAATTTTTAGTTCTTGATTAAATACCGTAAAATAACA
ATTTTTTAATATACATATAAATAATTAGCAAATAAAAAATTTCAAAATTT
CCACGAATTCGTTAAATCTAAATTGAGATCTTATAAGCATACTATTAATA
TTATTAATATCCATCTGGAAACAACACAAAAAACCGAAACGCAAACATAT
CATGCCCAAAGTAATATTTTTAAGAGATAAATTGTAAATGTGGATACTAC
AGAAGTTTTAAATTGAAATAAATGTTCTCGAATTTTAAAAAAAAAAAAAA
AA

RH44874.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:36:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG15385-RA 2681 CG15385-RA 45..2681 2..2638 13185 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:43:52
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 2209305..2210602 2636..1338 6280 99.1 Minus
chr2L 23010047 chr2L 2210654..2211240 1341..755 2935 100 Minus
chr2L 23010047 chr2L 2211501..2211822 615..294 1610 100 Minus
chr2L 23010047 chr2L 2212008..2212301 295..2 1470 100 Minus
chr2L 23010047 chr2L 2211306..2211449 755..612 705 99.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:30:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:43:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2209572..2210872 2638..1338 6505 100 Minus
2L 23513712 2L 2210924..2211510 1341..755 2935 100 Minus
2L 23513712 2L 2211771..2212092 615..294 1610 100 Minus
2L 23513712 2L 2212278..2212571 295..2 1470 100 Minus
2L 23513712 2L 2211576..2211719 755..612 720 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:03:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2209572..2210872 2638..1338 6505 100 Minus
2L 23513712 2L 2210924..2211510 1341..755 2935 100 Minus
2L 23513712 2L 2211771..2212092 615..294 1610 100 Minus
2L 23513712 2L 2212278..2212571 295..2 1470 100 Minus
2L 23513712 2L 2211576..2211719 755..612 720 100 Minus
Blast to na_te.dros performed 2019-03-15 16:43:50
Subject Length Description Subject Range Query Range Score Percent Strand
TAHRE 10463 TAHRE OSV 10463bp 6702..6797 2418..2510 139 66.3 Plus

RH44874.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:44:45 Download gff for RH44874.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 2211503..2211821 295..613 100 <- Minus
chr2L 2209305..2210599 1341..2636 99 <- Minus
chr2L 2210655..2211240 755..1340 100 <- Minus
chr2L 2211307..2211447 614..754 99 <- Minus
chr2L 2212009..2212301 1..294 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:47:23 Download gff for RH44874.complete
Subject Subject Range Query Range Percent Splice Strand
CG15385-RA 1..1764 198..1961 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:58:55 Download gff for RH44874.complete
Subject Subject Range Query Range Percent Splice Strand
CG15385-RA 1..1764 198..1961 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:09:10 Download gff for RH44874.complete
Subject Subject Range Query Range Percent Splice Strand
CG15385-RA 1..1764 198..1961 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:23:40 Download gff for RH44874.complete
Subject Subject Range Query Range Percent Splice Strand
CG15385-RA 1..1764 198..1961 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:48:04 Download gff for RH44874.complete
Subject Subject Range Query Range Percent Splice Strand
CG15385-RA 1..1764 198..1961 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:24:15 Download gff for RH44874.complete
Subject Subject Range Query Range Percent Splice Strand
CG15385-RA 1..2635 2..2636 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:58:54 Download gff for RH44874.complete
Subject Subject Range Query Range Percent Splice Strand
CG15385-RA 1..2635 2..2636 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:09:10 Download gff for RH44874.complete
Subject Subject Range Query Range Percent Splice Strand
CG15385-RA 1..2635 2..2636 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:23:40 Download gff for RH44874.complete
Subject Subject Range Query Range Percent Splice Strand
CG15385-RA 1..2635 2..2636 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:48:04 Download gff for RH44874.complete
Subject Subject Range Query Range Percent Splice Strand
CG15385-RA 1..2635 2..2636 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:44:45 Download gff for RH44874.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2209574..2210869 1341..2636 100 <- Minus
2L 2210925..2211510 755..1340 100 <- Minus
2L 2211577..2211717 614..754 100 <- Minus
2L 2211773..2212091 295..613 100 <- Minus
2L 2212279..2212571 1..294 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:44:45 Download gff for RH44874.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2209574..2210869 1341..2636 100 <- Minus
2L 2210925..2211510 755..1340 100 <- Minus
2L 2211577..2211717 614..754 100 <- Minus
2L 2211773..2212091 295..613 100 <- Minus
2L 2212279..2212571 1..294 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:44:45 Download gff for RH44874.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2209574..2210869 1341..2636 100 <- Minus
2L 2210925..2211510 755..1340 100 <- Minus
2L 2211577..2211717 614..754 100 <- Minus
2L 2211773..2212091 295..613 100 <- Minus
2L 2212279..2212571 1..294 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:09:10 Download gff for RH44874.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2209574..2210869 1341..2636 100 <- Minus
arm_2L 2210925..2211510 755..1340 100 <- Minus
arm_2L 2211577..2211717 614..754 100 <- Minus
arm_2L 2211773..2212091 295..613 100 <- Minus
arm_2L 2212279..2212571 1..294 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:58:45 Download gff for RH44874.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2209574..2210869 1341..2636 100 <- Minus
2L 2210925..2211510 755..1340 100 <- Minus
2L 2211577..2211717 614..754 100 <- Minus
2L 2211773..2212091 295..613 100 <- Minus
2L 2212279..2212571 1..294 99   Minus

RH44874.pep Sequence

Translation from 197 to 1960

> RH44874.pep
MRLLKELMRVATQHRAFYCYVLLSVWIFLLIAGMYRYMGNVESTPSGGSV
FGPSSSGTVSSLGGDSSPSSTAQRFAKYRERCAPLAQLQRLDDGGILEGW
KLQGVLLVIRHGDRGPISHVRSAGINCGVSGGSDNLVNRYRSFLYNSSSS
ASGSNHMYWNKVGPFHGFPLLPATERGCPLGQLTYKGISQLLHVGDIMHQ
VYAHPLGLLLKPNPNRASVETTPHTLLNSDEVVVFTTRYRRTFQSALAML
FTLLPADKWLALNVRESHSMAFCFGECSCPQSALLRKRLEAMGDKQLLKR
GDVLDVMQWIGGTILQHTPNGISNPFEVVDALLTVLCHDATLPCRRKKAL
STPKPLRKNSNQELVDVINIDQDETAANLMQEAQTQVEPDSPEVENGNPS
VQADEAQEGCVEPSHVDTLMSFADELSQRSAGHSYYKLSGLLRSYGMIRH
IVSYMLKMISGDRTKFVLYSGHDCTMQYLTAALGIITNQGQTIAYASRLA
FEVYRSDAHTDYYFRVVYNGKDVTQQIDFCEGGKSLRVTRDSRGNKADLC
PIENIIRFLHEDYFSPLNATNFKEACGSVNPPKTGEF*

RH44874.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:08:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15300-PA 590 GF15300-PA 1..590 1..587 2852 90.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:08:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24549-PA 587 GG24549-PA 1..587 1..587 3097 97.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:08:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11471-PA 600 GH11471-PA 4..600 3..587 2179 73.4 Plus
Dgri\GH11473-PA 297 GH11473-PA 1..253 117..369 772 66.4 Plus
Dgri\GH12983-PA 187 GH12983-PA 4..187 3..186 688 73.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:49:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG15385-PB 587 CG15385-PB 1..587 1..587 3084 100 Plus
CG15385-PA 587 CG15385-PA 1..587 1..587 3084 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:08:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16940-PA 592 GI16940-PA 4..592 3..587 2237 76.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:08:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19417-PA 588 GL19417-PA 1..588 1..587 2640 85.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:08:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13691-PA 588 GA13691-PA 1..588 1..587 2633 84.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:08:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18257-PA 587 GM18257-PA 1..587 1..587 3127 98.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:08:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22866-PA 587 GD22866-PA 1..587 1..587 3144 98.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:08:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17212-PA 589 GJ17212-PA 4..589 3..587 2240 75.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:08:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15134-PA 599 GK15134-PA 4..599 3..587 2384 77.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:08:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15205-PA 587 GE15205-PA 1..587 1..587 3098 97.4 Plus

RH44874.hyp Sequence

Translation from 197 to 1960

> RH44874.hyp
MRLLKELMRVATQHRAFYCYVLLSVWIFLLIAGMYRYMGNVESTPSGGSV
FGPSSSGTVSSLGGDSSPSSTAQRFAKYRERCAPLAQLQRLDDGGILEGW
KLQGVLLVIRHGDRGPISHVRSAGINCGVSGGSDNLVNRYRSFLYNSSSS
ASGSNHMYWNKVGPFHGFPLLPATERGCPLGQLTYKGISQLLHVGDIMHQ
VYAHPLGLLLKPNPNRASVETTPHTLLNSDEVVVFTTRYRRTFQSALAML
FTLLPADKWLALNVRESHSMAFCFGECSCPQSALLRKRLEAMGDKQLLKR
GDVLDVMQWIGGTILQHTPNGISNPFEVVDALLTVLCHDATLPCRRKKAL
STPKPLRKNSNQELVDVINIDQDETAANLMQEAQTQVEPDSPEVENGNPS
VQADEAQEGCVEPSHVDTLMSFADELSQRSAGHSYYKLSGLLRSYGMIRH
IVSYMLKMISGDRTKFVLYSGHDCTMQYLTAALGIITNQGQTIAYASRLA
FEVYRSDAHTDYYFRVVYNGKDVTQQIDFCEGGKSLRVTRDSRGNKADLC
PIENIIRFLHEDYFSPLNATNFKEACGSVNPPKTGEF*

RH44874.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:51:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG15385-PB 587 CG15385-PB 1..587 1..587 3084 100 Plus
CG15385-PA 587 CG15385-PA 1..587 1..587 3084 100 Plus