Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
RH44958.complete Sequence
3660 bp assembled on 2009-07-15
GenBank Submission: BT088926.1
> RH44958.complete
GCTCTAGTGCTTCCAAATTACTTCCAAAAATCATGTCCAGCCAGCAAAAA
CCCATCAATGTTTACGTGCCGCCGATCAGCAGTTTTCCCGAAGCCAGTTT
CCTGGGTGGCTATGGACTGCAGGATCGCATTGAGGTGCCCAAGAGCGCGG
AAGTCCTTGAGGATGTCATCGATGAGCGGGACGCGCACTTCCTCTACGTA
GTCGATAGCCAGGGACGCCTGTTGGAGCACATACGTTACTACGGGGACGA
TTACCGGATGGCTTTGCGTGAGGCCTTCACCACGAAAGTCCTTGACCAAC
AGAATACTGGCGCAGATCTCCCATTGAATCGGGAATAGCGAAGGAACGAG
GAACCATGCCAGTGTACACAACAAATGAATTAACTGTTTCAATTAGAGCA
CTTCATTGCTCGATGGCCGGAAAATCAAGTACAAATTCGCTATAATTCCC
GCCTCGTTGGTTACATGCGAATTTAGGAAATATAGACAAATTGAATTCAA
CAAATTAAGTTCATGGTCAATTTTTAACTTTGTGAAATCCATAAGTTTAG
AAATCTTTTTTTTTTTTATAACTTTATCGAATAGGCTGTTTTTAAGTCGA
CTATCTGGGATGATTGCAACTTTTGGAATTTTTGCAAAAGTAATTTTTTT
TTCCCTTTTGGGATCCAGCGAGCTATTTGTTATGTACCGCATTTCGAAGC
GTACATATTTGCACAACAGATGAGCCACTTCAGCGAATTTTCCCCCCTTT
CTGGCTCTCAGGAATGGTAGATAAAAATATTTGTATTTACTTTCTGGTCA
CAATTTGTGAAAAACGAATTCTTTATTATTTTTTTCGGTTGTAAAAATGA
AATGTGGAAAACGAATTACACTTGCATCGGCATGTGTTGGGCATGCAGAT
GGGATCCGTATCGCTGTTTGCATCTCCATCTGCATCTACACCTGAAAATG
AATCCGTATCTGCAGGTATTTGCGTGAGTTACTTCGTTGCATAATGTGGT
TTTTATGGCCGCTGAATTTAATATGTTACGTATTCACACTAGAAATATGT
AAAGTCCTGTGTAAACAACTGAATAAATTACATATTTTGCAAGGAGTCGA
TATCTGCAAATCATCAGTAATCAAATTATAGATTTAATAACTACGTACTC
ACAGTTGAGACGCACATTCGAACAGTTTACTGAAAATGTATGGTTCGTAA
ACCATTTACTGACCATAGAACTAATGAAAGAGGGATGTTCAACAATAATT
ACCCTGGTGAAAATATAGAAAATAATTACAAAATATTTACCAGCAGTTGA
AATCGTGTGGATCTGTTAGTGCCGTTTTAAGTGCCCTGTAAATTCGGATA
ATTGAGCTTGCATAAAAATTGCGTATTCGCCCCGTTGCCCCTGCCTCAGT
GCAATTTATATGTTTCTGCATTGCTACCCGATCTACCGTTTTAGGACCTG
AATGGATGGGTATTATGTTAAATTTTATTGGCGTTCTCGCTATGGCAACT
GGTCAAAAGGACAGGATATCTGGATAACTGGACTGGAATGCCGTCGCCTG
CACCGCACTTATAGCCTTGAGAATTGTTAAAAAAGAAAAGAATTTAGCTC
CATTGCCATGGAAGCCAATTTGTCCATACGTAAACACCTGAGCCCCCATA
GAGCTAACTCAGCTGAATACCATTTAGCTCCCTAATTGGATAGGTTACAT
ATCATTTTGGGCGTGTGTGTATCAGGGTAGATTACCATGTTGTCTCGTTT
TGACTGAGTGCCCAAAAACTAAAAGGTGAATGCAAAATCTCATGTTGATT
GAGTCCTTTTGGTTGAGGACTTCATTACCACGAACCACATTCTGATATAC
AAAATTCCAAAGAAACTTTACAAAGACTGTGCCTGGCCTACTAATGATTC
GCAAAAGGCTTACAAATTTGAAAAGATTTATGCAAAATAAATAACTTAAG
TCGAGAGTTAAGAAACTTAAAAATTGAAGTCCTACAGGCATGGAATTAAA
TTCCAAATTGACTATCGTTGAAGCCAACAGTATTGACTATTTTTATAGCC
TATCTTATAGTTTATCAACTATTAACGGAATATAGAACAAATATTATAAA
GTCAAGCATGCTTTGAAATAAATCCATTTCAATTTACTTATTACCAACTA
AATAATACTTACTTCATATGTCGATGAACATTTTTTTGATTGATAATCGG
TTTTAATGTAAATACTTATAAATATGAATCAGTTTAAAAATAAATGTGTT
CTGAACTTTTGTTTGCTTAAGAATACCTTTAAAAGCTGCTTAATTGCGAA
GATTGGTGATTTTGGTAATGGAAAAATTTTAAAGATTTTTATGGAAGTTT
TCAATGAATCGTGCATTTGTTTTGTTAGCCTAAAAGGGCCGTTCTTTGAA
GAATCGTTTTCCCCAAAAGACTGGATTCGCCGATTCTCAACTTTTCCCCT
TCAAAAAACTGAAAGCCAAAAAATCAAAAAAACAACCACTGAAAGTGCTG
AATCGGTTGAACCAATCCTAGTGATTCCGAGGATTCTCCGCCAGATTTTA
GACGCCTTCGCGTCTGGGGCATGCGCTGAATGTGCACCGGGTGCGAGCGA
GATGGCAACCGGGTGCGAGCGGGACGGGGCGAGGCCGACAAGCGGAGTAA
TCGGTGTCCTTGGCTGGGGCACAAGACTCAAGGCTAACCTGTTGACAAAG
TGCATATTGCGCATACGCCCCATACGGCGCACAAGTCCAACAGGTAAGCC
GCTGGCGTAGGCGTTGCACATCCATCCACACAGTCGCCAAAAAAAGCCCA
CCCACCCACCGAAATCCGCCCACCGAAATCCTCCCACTGAACCACGCGCA
ACCTTGCCGTTGGCACTCGGACCTACCAAGGCTAACAAGGCGCCAATAGC
ATTGATCTGCGTAAATCAAGTTACCAGAATTACAGCCAGCCGCCTTCGCA
CTGGATACAATTGCATTGCCTCATTCAGCAACTGCACACAATGGTCATTA
CCATTATTGCAGGAAACAGCCTTCACTTATGCTATAGTCTTTGATTATTC
AATGTTAAAATCATTTTGTAATTTTGTAGCTTTAAGTGAACAATAAACTT
AAAACACACAATATTCTCTGAACTTGATTTATATAATTATTTTCACATTT
ACTCAACATCAAAAATTATCCTTAATGAGAAATGTTATTTCTTGGAAGTT
TTCTTGGAAATTAGTTAAACGAAACAATCATTAAATAAGTTTCTTATGTT
TTCATTTTTCCGTGGAATATTTTTTTAATTGACTTAACATAATTTGTTGA
ATGCTACTTAATAATAATACTACTTAATAATTTAAGGAACCTTGATCTGA
TAAAGAAAACACGAATAATACATCTTGGAAATACCGAGACAGCCACAAAA
TAAGCTTATGCATCTAAAGTCAAAGGCTTAGAGATCTATATATAATCGCT
CGCACAAACTGACTTTTCCTTGACATTTGCGAAGGTGTTTTGAACGGATT
AGTCGTGTTTGAAAAGAGACTCCCCTCAGAAGTGCCACCAATAGCGGTTG
CAACATCACAAGTAGCCGCTGTGGGACGCTTTTCCCCTTTATCAGCGATT
CAGCGAGCTGAGCTGAGCATTTCCCCTCAAGTGGCAGCAACCCCAAAAAA
AAAAAAAAAA
RH44958.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 16:37:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32643-RA | 649 | CG32643-RA | 23..649 | 1..627 | 3135 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:19:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chrX | 22417052 | chrX | 12875552..12879185 | 6..3644 | 17660 | 99.2 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:30:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:19:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12984579..12988235 | 1..3657 | 18255 | 99.9 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:34:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23527363 | X | 12992677..12996333 | 1..3657 | 18255 | 99.9 | Plus |
Blast to na_te.dros performed 2019-03-16 02:19:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy5 | 7369 | gypsy5 GYPSY5 7369bp | 559..668 | 470..576 | 154 | 64.9 | Plus |
Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 6930..7017 | 1892..1978 | 131 | 62.5 | Plus |
Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 7016..7075 | 563..503 | 131 | 70.5 | Minus |
HeT-A | 6083 | HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). | 300..404 | 3305..3198 | 127 | 62.7 | Minus |
hopper | 1435 | hopper DMTRDNA 1435bp Derived from X80025 (g510507) (Rel. 44, Last updated, Version 11). | 681..826 | 3373..3233 | 121 | 61.1 | Minus |
I-element | 5371 | I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). | 4359..4420 | 3089..3149 | 118 | 69.8 | Plus |
RH44958.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:20:09 Download gff for
RH44958.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chrX | 12875547..12879185 | 1..3644 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:59:08 Download gff for
RH44958.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32643-RA | 1..306 | 33..338 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:08:46 Download gff for
RH44958.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32643-RA | 1..306 | 33..338 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:19:49 Download gff for
RH44958.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32643-RA | 1..306 | 33..338 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:05:53 Download gff for
RH44958.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32643-RA | 1..306 | 33..338 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-15 11:27:31 Download gff for
RH44958.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32643-RA | 23..649 | 1..627 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:08:46 Download gff for
RH44958.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32643-RA | 23..649 | 1..627 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:19:49 Download gff for
RH44958.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32643-RA | 56..548 | 1..493 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:05:53 Download gff for
RH44958.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32643-RA | 56..548 | 1..493 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:20:09 Download gff for
RH44958.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12984579..12988222 | 1..3644 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:20:09 Download gff for
RH44958.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12984579..12988222 | 1..3644 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:20:09 Download gff for
RH44958.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12984579..12988222 | 1..3644 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:19:49 Download gff for
RH44958.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12878612..12882255 | 1..3644 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:00:51 Download gff for
RH44958.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12992677..12996320 | 1..3644 | 99 | | Plus |
RH44958.pep Sequence
Translation from 2 to 337
> RH44958.pep
SSASKLLPKIMSSQQKPINVYVPPISSFPEASFLGGYGLQDRIEVPKSAE
VLEDVIDERDAHFLYVVDSQGRLLEHIRYYGDDYRMALREAFTTKVLDQQ
NTGADLPLNRE*
RH44958.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:28:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF21396-PA | 138 | GF21396-PA | 6..87 | 18..92 | 287 | 65.9 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:28:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG17747-PA | 101 | GG17747-PA | 1..101 | 11..111 | 447 | 81.2 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:31:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32643-PA | 101 | CG32643-PA | 1..101 | 11..111 | 521 | 100 | Plus |
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:28:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmoj\GI16286-PA | 110 | GI16286-PA | 1..102 | 10..93 | 161 | 37.3 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:28:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM11594-PA | 101 | GM11594-PA | 1..101 | 11..111 | 496 | 91.1 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:28:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD17095-PA | 101 | GD17095-PA | 1..101 | 11..111 | 500 | 92.1 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:28:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ16525-PA | 106 | GJ16525-PA | 1..99 | 11..94 | 147 | 40 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:28:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK25186-PA | 94 | GK25186-PA | 1..93 | 11..95 | 188 | 43.2 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:28:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE17037-PA | 117 | GE17037-PA | 1..103 | 11..111 | 426 | 80.6 | Plus |
RH44958.hyp Sequence
Translation from 2223 to 2759
> RH44958.hyp
MNQFKNKCVLNFCLLKNTFKSCLIAKIGDFGNGKILKIFMEVFNESCICF
VSLKGPFFEESFSPKDWIRRFSTFPLQKTESQKIKKTTTESAESVEPILV
IPRILRQILDAFASGACAECAPGASEMATGCERDGARPTSGVIGVLGWGT
RLKANLLTKCILRIRPIRRTSPTGKPLA*
Sequence RH44958.hyp has no blast hits.