BDGP Sequence Production Resources |
Search the DGRC for RH45308
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 453 |
Well: | 8 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG3566-RC |
Protein status: | RH45308.pep: gold |
Preliminary Size: | 482 |
Sequenced Size: | 1578 |
Gene | Date | Evidence |
---|---|---|
CG3566 | 2001-12-17 | Blastp of sequenced clone |
CG3566 | 2002-01-01 | Sim4 clustering to Release 2 |
CG3566 | 2003-01-01 | Sim4 clustering to Release 3 |
CG3566 | 2008-04-29 | Release 5.5 accounting |
CG3566 | 2008-08-15 | Release 5.9 accounting |
CG3566 | 2008-12-18 | 5.12 accounting |
1578 bp (1578 high quality bases) assembled on 2001-12-17
GenBank Submission: AY071735
> RH45308.complete GAAATTTGCGGAGAAGAGCAGGCAGGCGCAGTCAGGCAAGATGAGCAAGG AAATCCGTTTGGCCACCGTCAACGAACACAACAAAGCCACGGATCTGTGG GTGGTCATCGACAACAAGGTCTACGATGTGACCAAGTTCCGTCTCGAGCA TCCCGGTGGCGAGGAATCCCTGGTGGATGAGGCCGGTCGCGATGCCACCA AGGCCTTCAATGACGTGGGTCACAGCTCGGAGGCGAGAGAGATGTTGAAG AAATACTACATTGGTGACCTGGCTGCTGCGGACATCAAGAAGAAAAGCCC AATTAGGTGAGAATCCTGTCCAGCAAGTGCATGCAAAGACCCAACCAAGC CAAAATGCCATATCATCATGTAAATAAAGAAAGCCCTGCGGATTTCCCTT CTCCGCTCCCACACGGATTGATCTCCTTATCTCGCTAGAACACCAGTATT CCTGATAAGGCATTTCATCATCATCATTTCGTACGCTCCACTTTCCTTAA TGCATGAAGCTCCTATTCCGACCACAACCGGTTTCGCATGAGCATGGCCT GCGTTTCAATCAATAAGTACAATTAGCCAACTCTTATGTAATCCATTAAT TGCCTCGAAGCCCCCAAAGTTTCACGCTTCACGTGTCCTGAAAGTCTCTA TTTCGTACACTTTTTGGTGTACTACTTTGATACCCTTTGATACGATTGGA TACCCTGAAGAAGATAATGATGATACAGAAGTGTTCCTTAAATTATATCA ATTATTTATATTCCCATATAGAGTATCAACTTTTTCTTTACCAACCGCTA ACAAAGCCACAATACTTAATATTTAATGAATCTAATGAATCTCAACTTGC ATGTATGATATTTGCTCCATTCAAGATTTAATTCCTTCTCAAGCACGAAA ATAAGGTTCTACAAAAGCTAGTTGGACTTGTAAGTTCTAACCACTGACCT GTGTACATATATTACCCATCATGATTAACCCAAAGCACACGTCAAGCAAC TGGAATTATGTACATATATAAATGTGATAATCTAGAATACCAACAATTTG CACGCTGTAATTGGTCACTCTTTGGTTTTGTGAATGGCACCCCACCTTGA CTTGCGTTTTTATTTTGATTCTTGGTTCTGTGCCTTGGTAAAGTGCCACG CCTACTGATGCCGCCGCCACCCCCAAGCAATGCTGCATCCTAAGTTAAAT CAACCCCTCTAGAAATGCCTGCAAAACCGTGTAATCCTAGCTAGCTAACC AAAGTGCACCCAGTTTTGTTGTTGTGACACCCAGTCGGTCGGAGTGCCTT ATCCTGACCATGATACTCCCATTGATTTAAACCGCCTTTCATATTCTCTA TTCCATGCAACAGCTGCCGTCATGTGGCACTGGCCCTGGGCGCCGCCTTC ATCGGCATCTCGCTGGTCTATGTGATCCGACGCGGTGTGGCCAGAAACTA GTCTGCGGCCGGACTGCATTACGAGATTCCAGATATATTCCCCCAATTTG GGAACATCAATTTCCTCACACATTTGACACGAAATAAATTGTACAAATTG CTTAAATTACACAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG3566-RC | 1631 | CG3566-RC | 69..1631 | 2..1564 | 7815 | 100 | Plus |
CG3566.a | 748 | CG3566.a | 69..547 | 2..480 | 2395 | 100 | Plus |
CG3566-RB | 645 | CG3566-RB | 140..444 | 2..306 | 1525 | 100 | Plus |
CG3566-RB | 645 | CG3566-RB | 443..645 | 1362..1564 | 1015 | 100 | Plus |
CG3566.a | 748 | CG3566.a | 548..748 | 1364..1564 | 1005 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 6167158..6168478 | 1562..236 | 6315 | 98.7 | Minus |
chrX | 22417052 | chrX | 6168711..6168857 | 148..2 | 720 | 99.3 | Minus |
chrX | 22417052 | chrX | 6168550..6168645 | 237..142 | 465 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 6167158..6168476 | 238..1562 | 98 | <- | Minus |
chrX | 6168550..6168638 | 149..237 | 100 | <- | Minus |
chrX | 6168711..6168857 | 1..148 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3566-RC | 1..270 | 41..310 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3566-RC | 1..270 | 41..310 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3566-RC | 1..270 | 41..310 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3566-RC | 1..270 | 41..310 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3566-RC | 1..270 | 41..310 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3566-RC | 1..1561 | 2..1562 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3566-RC | 1..1561 | 2..1562 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3566-RC | 46..1607 | 1..1562 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3566-RC | 1..1561 | 2..1562 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3566-RC | 46..1607 | 1..1562 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 6274972..6276296 | 238..1562 | 100 | <- | Minus |
X | 6276370..6276458 | 149..237 | 100 | <- | Minus |
X | 6276532..6276678 | 1..148 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 6274972..6276296 | 238..1562 | 100 | <- | Minus |
X | 6276370..6276458 | 149..237 | 100 | <- | Minus |
X | 6276532..6276678 | 1..148 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 6274972..6276296 | 238..1562 | 100 | <- | Minus |
X | 6276370..6276458 | 149..237 | 100 | <- | Minus |
X | 6276532..6276678 | 1..148 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 6169005..6170329 | 238..1562 | 100 | <- | Minus |
arm_X | 6170403..6170491 | 149..237 | 100 | <- | Minus |
arm_X | 6170565..6170711 | 1..148 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 6284630..6284776 | 1..148 | 99 | Minus | |
X | 6283070..6284394 | 238..1562 | 100 | <- | Minus |
X | 6284468..6284556 | 149..237 | 100 | <- | Minus |
Translation from 0 to 309
> RH45308.hyp KFAEKSRQAQSGKMSKEIRLATVNEHNKATDLWVVIDNKVYDVTKFRLEH PGGEESLVDEAGRDATKAFNDVGHSSEAREMLKKYYIGDLAAADIKKKSP IR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG3566-PC | 89 | CG3566-PC | 1..89 | 14..102 | 457 | 100 | Plus |
CG3566-PD | 106 | CG3566-PD | 1..88 | 14..101 | 452 | 100 | Plus |
CG3566-PB | 117 | CG3566-PB | 1..88 | 14..101 | 452 | 100 | Plus |
Cyt-b5-PB | 134 | CG2140-PB | 2..85 | 11..94 | 238 | 51.2 | Plus |
CG6870-PB | 137 | CG6870-PB | 43..116 | 17..90 | 205 | 52.7 | Plus |
Translation from 40 to 309
> RH45308.pep MSKEIRLATVNEHNKATDLWVVIDNKVYDVTKFRLEHPGGEESLVDEAGR DATKAFNDVGHSSEAREMLKKYYIGDLAAADIKKKSPIR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF20301-PA | 117 | GF20301-PA | 1..88 | 1..88 | 371 | 77.3 | Plus |
Dana\GF13182-PA | 134 | GF13182-PA | 6..85 | 2..81 | 235 | 53.8 | Plus |
Dana\GF15091-PA | 138 | GF15091-PA | 44..117 | 4..77 | 207 | 52.7 | Plus |
Dana\GF10319-PA | 119 | GF10319-PA | 1..79 | 1..77 | 183 | 45.6 | Plus |
Dana\GF12339-PA | 534 | GF12339-PA | 98..168 | 13..83 | 147 | 42.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17685-PA | 117 | GG17685-PA | 1..88 | 1..88 | 424 | 92 | Plus |
Dere\GG23285-PA | 134 | GG23285-PA | 6..85 | 2..81 | 234 | 52.5 | Plus |
Dere\GG21732-PA | 137 | GG21732-PA | 43..118 | 4..79 | 207 | 50 | Plus |
Dere\GG13493-PA | 119 | GG13493-PA | 1..82 | 1..80 | 193 | 46.3 | Plus |
Dere\GG21968-PA | 535 | GG21968-PA | 98..168 | 13..83 | 142 | 39.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24801-PA | 118 | GH24801-PA | 1..88 | 1..88 | 331 | 67 | Plus |
Dgri\GH20101-PA | 134 | GH20101-PA | 7..88 | 3..84 | 234 | 52.4 | Plus |
Dgri\GH10148-PA | 140 | GH10148-PA | 43..122 | 1..80 | 212 | 48.8 | Plus |
Dgri\GH22815-PA | 547 | GH22815-PA | 99..172 | 13..86 | 145 | 39.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG3566-PC | 89 | CG3566-PC | 1..89 | 1..89 | 457 | 100 | Plus |
CG3566-PD | 106 | CG3566-PD | 1..88 | 1..88 | 452 | 100 | Plus |
CG3566-PB | 117 | CG3566-PB | 1..88 | 1..88 | 452 | 100 | Plus |
Cyt-b5-PB | 134 | CG2140-PB | 6..85 | 2..81 | 235 | 52.5 | Plus |
CG6870-PB | 137 | CG6870-PB | 43..116 | 4..77 | 205 | 52.7 | Plus |
CG6870-PA | 137 | CG6870-PA | 43..116 | 4..77 | 205 | 52.7 | Plus |
CG5157-PA | 119 | CG5157-PA | 1..82 | 1..80 | 191 | 47.6 | Plus |
Cyt-b5-PA | 123 | CG2140-PA | 30..74 | 37..81 | 160 | 60 | Plus |
CG11257-PA | 535 | CG11257-PA | 98..174 | 13..87 | 143 | 40.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21528-PA | 117 | GI21528-PA | 1..88 | 1..88 | 324 | 67 | Plus |
Dmoj\GI18997-PA | 135 | GI18997-PA | 12..83 | 8..79 | 233 | 59.7 | Plus |
Dmoj\GI22344-PA | 139 | GI22344-PA | 45..118 | 4..77 | 203 | 50 | Plus |
Dmoj\GI12677-PA | 121 | GI12677-PA | 1..80 | 1..78 | 181 | 43.8 | Plus |
Dmoj\GI21190-PA | 528 | GI21190-PA | 93..157 | 13..77 | 140 | 41.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21352-PA | 118 | GL21352-PA | 1..89 | 1..89 | 378 | 79.8 | Plus |
Dper\GL20014-PA | 135 | GL20014-PA | 7..85 | 3..81 | 233 | 54.4 | Plus |
Dper\GL18032-PA | 132 | GL18032-PA | 1..79 | 1..77 | 197 | 49.4 | Plus |
Dper\GL15857-PA | 138 | GL15857-PA | 43..116 | 4..77 | 195 | 48.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17524-PA | 118 | GA17524-PA | 1..89 | 1..89 | 381 | 80.9 | Plus |
Dpse\GA15264-PA | 135 | GA15264-PA | 7..85 | 3..81 | 233 | 54.4 | Plus |
Dpse\GA18697-PA | 132 | GA18697-PA | 1..79 | 1..77 | 197 | 49.4 | Plus |
Dpse\GA19919-PA | 138 | GA19919-PA | 43..116 | 4..77 | 195 | 48.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20961-PA | 134 | GM20961-PA | 6..85 | 2..81 | 234 | 52.5 | Plus |
Dsec\GM17113-PA | 137 | GM17113-PA | 43..118 | 4..79 | 209 | 51.3 | Plus |
Dsec\GM24442-PA | 119 | GM24442-PA | 1..82 | 1..80 | 192 | 46.3 | Plus |
Dsec\GM12584-PA | 76 | GM12584-PA | 1..42 | 1..42 | 189 | 83.3 | Plus |
Dsec\GM21957-PA | 535 | GM21957-PA | 98..174 | 13..87 | 148 | 40.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10488-PA | 134 | GD10488-PA | 6..85 | 2..81 | 234 | 52.5 | Plus |
Dsim\GD12511-PA | 119 | GD12511-PA | 1..82 | 1..80 | 195 | 47.6 | Plus |
Dsim\GD21856-PA | 136 | GD21856-PA | 43..117 | 4..79 | 192 | 51.3 | Plus |
Dsim\GD11452-PA | 535 | GD11452-PA | 98..174 | 13..87 | 148 | 40.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16001-PA | 117 | GJ16001-PA | 1..88 | 1..88 | 317 | 67 | Plus |
Dvir\GJ19962-PA | 135 | GJ19962-PA | 7..85 | 3..81 | 243 | 57 | Plus |
Dvir\GJ20242-PA | 104 | GJ20242-PA | 9..86 | 3..80 | 189 | 42.3 | Plus |
Dvir\GJ12661-PA | 120 | GJ12661-PA | 1..80 | 1..78 | 186 | 45 | Plus |
Dvir\GJ20792-PA | 539 | GJ20792-PA | 94..163 | 8..77 | 143 | 40 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK19965-PA | 118 | GK19965-PA | 4..89 | 3..88 | 320 | 68.6 | Plus |
Dwil\GK10686-PA | 133 | GK10686-PA | 12..85 | 8..81 | 235 | 55.4 | Plus |
Dwil\GK18221-PA | 140 | GK18221-PA | 45..118 | 4..77 | 214 | 51.4 | Plus |
Dwil\GK11351-PA | 124 | GK11351-PA | 1..92 | 1..85 | 192 | 44.6 | Plus |
Dwil\GK22167-PA | 528 | GK22167-PA | 91..155 | 13..77 | 144 | 43.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE16473-PA | 117 | GE16473-PA | 1..88 | 1..88 | 424 | 90.9 | Plus |
Dyak\GE19131-PA | 134 | GE19131-PA | 6..85 | 2..81 | 234 | 52.5 | Plus |
Dyak\GE13120-PA | 137 | GE13120-PA | 43..118 | 4..79 | 206 | 50 | Plus |
Dyak\GE22584-PA | 119 | GE22584-PA | 1..82 | 1..80 | 197 | 47.6 | Plus |
Dyak\GE12047-PA | 537 | GE12047-PA | 98..174 | 13..87 | 143 | 39 | Plus |