Clone RH45308 Report

Search the DGRC for RH45308

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:453
Well:8
Vector:pFlc-1
Associated Gene/TranscriptCG3566-RC
Protein status:RH45308.pep: gold
Preliminary Size:482
Sequenced Size:1578

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3566 2001-12-17 Blastp of sequenced clone
CG3566 2002-01-01 Sim4 clustering to Release 2
CG3566 2003-01-01 Sim4 clustering to Release 3
CG3566 2008-04-29 Release 5.5 accounting
CG3566 2008-08-15 Release 5.9 accounting
CG3566 2008-12-18 5.12 accounting

Clone Sequence Records

RH45308.complete Sequence

1578 bp (1578 high quality bases) assembled on 2001-12-17

GenBank Submission: AY071735

> RH45308.complete
GAAATTTGCGGAGAAGAGCAGGCAGGCGCAGTCAGGCAAGATGAGCAAGG
AAATCCGTTTGGCCACCGTCAACGAACACAACAAAGCCACGGATCTGTGG
GTGGTCATCGACAACAAGGTCTACGATGTGACCAAGTTCCGTCTCGAGCA
TCCCGGTGGCGAGGAATCCCTGGTGGATGAGGCCGGTCGCGATGCCACCA
AGGCCTTCAATGACGTGGGTCACAGCTCGGAGGCGAGAGAGATGTTGAAG
AAATACTACATTGGTGACCTGGCTGCTGCGGACATCAAGAAGAAAAGCCC
AATTAGGTGAGAATCCTGTCCAGCAAGTGCATGCAAAGACCCAACCAAGC
CAAAATGCCATATCATCATGTAAATAAAGAAAGCCCTGCGGATTTCCCTT
CTCCGCTCCCACACGGATTGATCTCCTTATCTCGCTAGAACACCAGTATT
CCTGATAAGGCATTTCATCATCATCATTTCGTACGCTCCACTTTCCTTAA
TGCATGAAGCTCCTATTCCGACCACAACCGGTTTCGCATGAGCATGGCCT
GCGTTTCAATCAATAAGTACAATTAGCCAACTCTTATGTAATCCATTAAT
TGCCTCGAAGCCCCCAAAGTTTCACGCTTCACGTGTCCTGAAAGTCTCTA
TTTCGTACACTTTTTGGTGTACTACTTTGATACCCTTTGATACGATTGGA
TACCCTGAAGAAGATAATGATGATACAGAAGTGTTCCTTAAATTATATCA
ATTATTTATATTCCCATATAGAGTATCAACTTTTTCTTTACCAACCGCTA
ACAAAGCCACAATACTTAATATTTAATGAATCTAATGAATCTCAACTTGC
ATGTATGATATTTGCTCCATTCAAGATTTAATTCCTTCTCAAGCACGAAA
ATAAGGTTCTACAAAAGCTAGTTGGACTTGTAAGTTCTAACCACTGACCT
GTGTACATATATTACCCATCATGATTAACCCAAAGCACACGTCAAGCAAC
TGGAATTATGTACATATATAAATGTGATAATCTAGAATACCAACAATTTG
CACGCTGTAATTGGTCACTCTTTGGTTTTGTGAATGGCACCCCACCTTGA
CTTGCGTTTTTATTTTGATTCTTGGTTCTGTGCCTTGGTAAAGTGCCACG
CCTACTGATGCCGCCGCCACCCCCAAGCAATGCTGCATCCTAAGTTAAAT
CAACCCCTCTAGAAATGCCTGCAAAACCGTGTAATCCTAGCTAGCTAACC
AAAGTGCACCCAGTTTTGTTGTTGTGACACCCAGTCGGTCGGAGTGCCTT
ATCCTGACCATGATACTCCCATTGATTTAAACCGCCTTTCATATTCTCTA
TTCCATGCAACAGCTGCCGTCATGTGGCACTGGCCCTGGGCGCCGCCTTC
ATCGGCATCTCGCTGGTCTATGTGATCCGACGCGGTGTGGCCAGAAACTA
GTCTGCGGCCGGACTGCATTACGAGATTCCAGATATATTCCCCCAATTTG
GGAACATCAATTTCCTCACACATTTGACACGAAATAAATTGTACAAATTG
CTTAAATTACACAAAAAAAAAAAAAAAA

RH45308.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:37:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG3566-RC 1631 CG3566-RC 69..1631 2..1564 7815 100 Plus
CG3566.a 748 CG3566.a 69..547 2..480 2395 100 Plus
CG3566-RB 645 CG3566-RB 140..444 2..306 1525 100 Plus
CG3566-RB 645 CG3566-RB 443..645 1362..1564 1015 100 Plus
CG3566.a 748 CG3566.a 548..748 1364..1564 1005 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:34:00
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 6167158..6168478 1562..236 6315 98.7 Minus
chrX 22417052 chrX 6168711..6168857 148..2 720 99.3 Minus
chrX 22417052 chrX 6168550..6168645 237..142 465 99 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:30:30 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:33:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6274970..6276298 1564..236 6645 100 Minus
X 23542271 X 6276532..6276678 148..2 735 100 Minus
X 23542271 X 6276370..6276465 237..142 465 99 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:04:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 6283068..6284396 1564..236 6645 100 Minus
X 23527363 X 6284630..6284776 148..2 735 100 Minus
X 23527363 X 6284468..6284563 237..142 465 98.9 Minus
Blast to na_te.dros performed on 2019-03-15 20:33:59 has no hits.

RH45308.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:34:38 Download gff for RH45308.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 6167158..6168476 238..1562 98 <- Minus
chrX 6168550..6168638 149..237 100 <- Minus
chrX 6168711..6168857 1..148 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:47:33 Download gff for RH45308.complete
Subject Subject Range Query Range Percent Splice Strand
CG3566-RC 1..270 41..310 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:00:29 Download gff for RH45308.complete
Subject Subject Range Query Range Percent Splice Strand
CG3566-RC 1..270 41..310 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:15:56 Download gff for RH45308.complete
Subject Subject Range Query Range Percent Splice Strand
CG3566-RC 1..270 41..310 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:25:09 Download gff for RH45308.complete
Subject Subject Range Query Range Percent Splice Strand
CG3566-RC 1..270 41..310 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:24:20 Download gff for RH45308.complete
Subject Subject Range Query Range Percent Splice Strand
CG3566-RC 1..270 41..310 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:26:31 Download gff for RH45308.complete
Subject Subject Range Query Range Percent Splice Strand
CG3566-RC 1..1561 2..1562 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:00:29 Download gff for RH45308.complete
Subject Subject Range Query Range Percent Splice Strand
CG3566-RC 1..1561 2..1562 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:15:56 Download gff for RH45308.complete
Subject Subject Range Query Range Percent Splice Strand
CG3566-RC 46..1607 1..1562 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:25:09 Download gff for RH45308.complete
Subject Subject Range Query Range Percent Splice Strand
CG3566-RC 1..1561 2..1562 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:24:20 Download gff for RH45308.complete
Subject Subject Range Query Range Percent Splice Strand
CG3566-RC 46..1607 1..1562 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:34:38 Download gff for RH45308.complete
Subject Subject Range Query Range Percent Splice Strand
X 6274972..6276296 238..1562 100 <- Minus
X 6276370..6276458 149..237 100 <- Minus
X 6276532..6276678 1..148 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:34:38 Download gff for RH45308.complete
Subject Subject Range Query Range Percent Splice Strand
X 6274972..6276296 238..1562 100 <- Minus
X 6276370..6276458 149..237 100 <- Minus
X 6276532..6276678 1..148 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:34:38 Download gff for RH45308.complete
Subject Subject Range Query Range Percent Splice Strand
X 6274972..6276296 238..1562 100 <- Minus
X 6276370..6276458 149..237 100 <- Minus
X 6276532..6276678 1..148 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:15:56 Download gff for RH45308.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6169005..6170329 238..1562 100 <- Minus
arm_X 6170403..6170491 149..237 100 <- Minus
arm_X 6170565..6170711 1..148 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:00:33 Download gff for RH45308.complete
Subject Subject Range Query Range Percent Splice Strand
X 6284630..6284776 1..148 99   Minus
X 6283070..6284394 238..1562 100 <- Minus
X 6284468..6284556 149..237 100 <- Minus

RH45308.hyp Sequence

Translation from 0 to 309

> RH45308.hyp
KFAEKSRQAQSGKMSKEIRLATVNEHNKATDLWVVIDNKVYDVTKFRLEH
PGGEESLVDEAGRDATKAFNDVGHSSEAREMLKKYYIGDLAAADIKKKSP
IR*

RH45308.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:28:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG3566-PC 89 CG3566-PC 1..89 14..102 457 100 Plus
CG3566-PD 106 CG3566-PD 1..88 14..101 452 100 Plus
CG3566-PB 117 CG3566-PB 1..88 14..101 452 100 Plus
Cyt-b5-PB 134 CG2140-PB 2..85 11..94 238 51.2 Plus
CG6870-PB 137 CG6870-PB 43..116 17..90 205 52.7 Plus

RH45308.pep Sequence

Translation from 40 to 309

> RH45308.pep
MSKEIRLATVNEHNKATDLWVVIDNKVYDVTKFRLEHPGGEESLVDEAGR
DATKAFNDVGHSSEAREMLKKYYIGDLAAADIKKKSPIR*

RH45308.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:49:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20301-PA 117 GF20301-PA 1..88 1..88 371 77.3 Plus
Dana\GF13182-PA 134 GF13182-PA 6..85 2..81 235 53.8 Plus
Dana\GF15091-PA 138 GF15091-PA 44..117 4..77 207 52.7 Plus
Dana\GF10319-PA 119 GF10319-PA 1..79 1..77 183 45.6 Plus
Dana\GF12339-PA 534 GF12339-PA 98..168 13..83 147 42.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:49:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17685-PA 117 GG17685-PA 1..88 1..88 424 92 Plus
Dere\GG23285-PA 134 GG23285-PA 6..85 2..81 234 52.5 Plus
Dere\GG21732-PA 137 GG21732-PA 43..118 4..79 207 50 Plus
Dere\GG13493-PA 119 GG13493-PA 1..82 1..80 193 46.3 Plus
Dere\GG21968-PA 535 GG21968-PA 98..168 13..83 142 39.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:49:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24801-PA 118 GH24801-PA 1..88 1..88 331 67 Plus
Dgri\GH20101-PA 134 GH20101-PA 7..88 3..84 234 52.4 Plus
Dgri\GH10148-PA 140 GH10148-PA 43..122 1..80 212 48.8 Plus
Dgri\GH22815-PA 547 GH22815-PA 99..172 13..86 145 39.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:22:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG3566-PC 89 CG3566-PC 1..89 1..89 457 100 Plus
CG3566-PD 106 CG3566-PD 1..88 1..88 452 100 Plus
CG3566-PB 117 CG3566-PB 1..88 1..88 452 100 Plus
Cyt-b5-PB 134 CG2140-PB 6..85 2..81 235 52.5 Plus
CG6870-PB 137 CG6870-PB 43..116 4..77 205 52.7 Plus
CG6870-PA 137 CG6870-PA 43..116 4..77 205 52.7 Plus
CG5157-PA 119 CG5157-PA 1..82 1..80 191 47.6 Plus
Cyt-b5-PA 123 CG2140-PA 30..74 37..81 160 60 Plus
CG11257-PA 535 CG11257-PA 98..174 13..87 143 40.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:49:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21528-PA 117 GI21528-PA 1..88 1..88 324 67 Plus
Dmoj\GI18997-PA 135 GI18997-PA 12..83 8..79 233 59.7 Plus
Dmoj\GI22344-PA 139 GI22344-PA 45..118 4..77 203 50 Plus
Dmoj\GI12677-PA 121 GI12677-PA 1..80 1..78 181 43.8 Plus
Dmoj\GI21190-PA 528 GI21190-PA 93..157 13..77 140 41.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:49:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21352-PA 118 GL21352-PA 1..89 1..89 378 79.8 Plus
Dper\GL20014-PA 135 GL20014-PA 7..85 3..81 233 54.4 Plus
Dper\GL18032-PA 132 GL18032-PA 1..79 1..77 197 49.4 Plus
Dper\GL15857-PA 138 GL15857-PA 43..116 4..77 195 48.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:49:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17524-PA 118 GA17524-PA 1..89 1..89 381 80.9 Plus
Dpse\GA15264-PA 135 GA15264-PA 7..85 3..81 233 54.4 Plus
Dpse\GA18697-PA 132 GA18697-PA 1..79 1..77 197 49.4 Plus
Dpse\GA19919-PA 138 GA19919-PA 43..116 4..77 195 48.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:49:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20961-PA 134 GM20961-PA 6..85 2..81 234 52.5 Plus
Dsec\GM17113-PA 137 GM17113-PA 43..118 4..79 209 51.3 Plus
Dsec\GM24442-PA 119 GM24442-PA 1..82 1..80 192 46.3 Plus
Dsec\GM12584-PA 76 GM12584-PA 1..42 1..42 189 83.3 Plus
Dsec\GM21957-PA 535 GM21957-PA 98..174 13..87 148 40.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:49:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10488-PA 134 GD10488-PA 6..85 2..81 234 52.5 Plus
Dsim\GD12511-PA 119 GD12511-PA 1..82 1..80 195 47.6 Plus
Dsim\GD21856-PA 136 GD21856-PA 43..117 4..79 192 51.3 Plus
Dsim\GD11452-PA 535 GD11452-PA 98..174 13..87 148 40.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:49:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16001-PA 117 GJ16001-PA 1..88 1..88 317 67 Plus
Dvir\GJ19962-PA 135 GJ19962-PA 7..85 3..81 243 57 Plus
Dvir\GJ20242-PA 104 GJ20242-PA 9..86 3..80 189 42.3 Plus
Dvir\GJ12661-PA 120 GJ12661-PA 1..80 1..78 186 45 Plus
Dvir\GJ20792-PA 539 GJ20792-PA 94..163 8..77 143 40 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:49:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19965-PA 118 GK19965-PA 4..89 3..88 320 68.6 Plus
Dwil\GK10686-PA 133 GK10686-PA 12..85 8..81 235 55.4 Plus
Dwil\GK18221-PA 140 GK18221-PA 45..118 4..77 214 51.4 Plus
Dwil\GK11351-PA 124 GK11351-PA 1..92 1..85 192 44.6 Plus
Dwil\GK22167-PA 528 GK22167-PA 91..155 13..77 144 43.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:49:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16473-PA 117 GE16473-PA 1..88 1..88 424 90.9 Plus
Dyak\GE19131-PA 134 GE19131-PA 6..85 2..81 234 52.5 Plus
Dyak\GE13120-PA 137 GE13120-PA 43..118 4..79 206 50 Plus
Dyak\GE22584-PA 119 GE22584-PA 1..82 1..80 197 47.6 Plus
Dyak\GE12047-PA 537 GE12047-PA 98..174 13..87 143 39 Plus