Clone RH45522 Report

Search the DGRC for RH45522

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:455
Well:22
Vector:pFlc-1
Associated Gene/TranscriptCG15927-RA
Protein status:RH45522.pep: gold
Sequenced Size:2276

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15927 2003-01-01 Sim4 clustering to Release 3
CG15927 2005-05-17 Blastp of sequenced clone
CG15927 2008-04-29 Release 5.5 accounting
CG15927 2008-08-15 Release 5.9 accounting
CG15927 2008-12-18 5.12 accounting

Clone Sequence Records

RH45522.complete Sequence

2276 bp (2276 high quality bases) assembled on 2005-05-17

GenBank Submission: BT022732

> RH45522.complete
GTTAAGCTTTGGAGCACATTGAAAATTTGTAATTCTAGTCAGTTAGCTAT
ACGTTTATATCTAAGTCTAATTGTACAGATATCCCTCCTCACATTTACCT
ATATACATATATATATACGTATGCATATAAATATTTTTTTTTTTTTGCAA
ATTATTTGTTCTAAATTTTAGTGATTAAGCAAAGGTCTACGTCTATGAGA
AATAAAAGAAAAGTAAATAAAAAATACAAACATAATGCGGGTCTAATGTG
GATATTGATGTTGAATAAAAACAATGTCAATCAAATGGGTTTGTGATTTA
GCTACCGTTACGAGCGCTTTCCGGTGATTATCAATTAATACAGTGCGTTT
CGAAAGAGTAAGTATTGAGTATTTCAGATGATAATTTCCAAATAAATACA
AAAATAGAATTTAAAAGGCTCATTACGAACCCAACACATTATTATAATCT
TAAAGTGGACTTTCATTAAGTTCTTCGGTTATGTCACGCACTGTACCGGA
CTGTCCATATGCAAATGTGGAACAGTGAGAGTGATCAGCGGTCAACTGCA
AATGCCGGCTGGAGTGAAAATTCTGAGCCACGCTTTTCCACATTGCTAAT
CTGCATAGAGAGTTTACTGCCTTTATAGTTTGTGGGTTTTTTTTTTTTTT
TTGATTGCGGGTGTCTTTTGTCTTAATGCTAATGGGCCGGAGATGTGTGT
GTGCTTATGATGGTTGTATTTTGGCTTTTTGTTTGGGCCACTACCAGTGG
CAGCGAGAGTGGACGGGTTATGTTTTAATGGCCATTGTAATGGCTCAACT
GTCGGCTAGTGAACCAGTGTTAATGTCAATCCACACGAAGGCATTCAAAG
AATTATTCTTCTCCACTTTGGCATAAATCAACACAACTCACATACGCTCA
CAACTCACTTGATGTTGTTAATAAATGTGTGTTGCTCATAACAAAATAGA
GGAAATAATGGAAGAAAGAGCCACTTCAACAGGCCACCAAACAATAAACG
TCCAGTCGCGGCCAGTTATGTTTTTATTTTCAATCCAAAGTGTTGGACAT
ATCACCACGCACAATGGTGCCAAAGCTATGAACTTCTAATAAATTTTGCT
ATTTAACTAACATCTATGCTATATCGTCTTATATATTTAAAATGGCAAAG
ACAGTGCATTTTATTTAATTTTTGGTTTTAAATTTGCATATATTTTAACC
CACTGTGCATTCGTGTACCGTACGGTATTTTCTCTAATTAATTCGCTTTT
ACGAGCGCATTCAGCTGACTTTAGGTTGATTTGAGCCGTGTATTTTTTAG
TCCGTTCAGTTGCTGCAACACGGGCCTAGAACGCGCTGCTTTTTCGCTTC
ACTCTCGACCGAATAACACATTTTGTTTATTTTTTATTCGAGTGCTTATA
TCGAGTGATCCTTGTGTTTATGATGAGCTAACAACCTGCCGGAAAATGCA
CATTTTGGCCTATTTAATTCTGAGCCTTTTTGGCCTGGTCGAGAGTTATG
GCCATCAGCCGGTACTGAGAAATATCATCAAAGTGCGAGCCAGCGGCTTT
ATGCCCTTCGAATCGGATTTACTACTGCCATTGAATATCCTGCGCCAGTT
GCAGTCGCACGATCGATCATCGCGTTACATTGGTCAGAGGCCAAAGCCAA
TAGTGAGGCCAAAGGTTAAGCAACAAATCAGATTGGAGAGAGCCAATCCT
TTGAGGGAGGCCAAAGGTGTTCAGCTCTATAACTTGATCGATGACGATGG
TGAACTACTGTTGAATCTCAAGGTTCACAACGAACAGAAGGGAACTGCAC
CGGCCAATTATCAAGAGGAGAAATATCAAAGTAGATACCAGAGCTACGAT
TCACCATGGATGCCCTCGAAATGGAGACCGACCAGCGAATTTCTGGGTGT
GACCTCCTCATCGCCACGCCCACTGCCCCTGCATCAGTATCTGGGCCAAA
ACAATAATCGCATCGATCAAAATACGGCGAAAAGGAGGCGGCAGGATATA
TGGCCCCACAAATAATAACTAAAATATAATAATATATATAATATATAATA
TATAACTCATTTAATTGTTTATTCTTAAACATCACAGCACCCAGAGCACA
TTCACATTTATGAACCTGATTTCAAGCAAAATCTCAATGATATTCATTTG
AATTTTTTTGAAAATAATCAATGATCCTAAAATATTTGCTAACATTTTAA
AACAAATTATATTAAAGCCAAATGATGGAATACTATTTCTAAAAGTTTAT
AAGATAATTGAAAAAAAAAAAAAAAA

RH45522.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:54:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG15927-RA 570 CG15927-RA 1..570 1446..2015 2850 100 Plus
Pkcdelta.b 2797 Pkcdelta.b 2571..2797 1..227 1135 100 Plus
Pkcdelta.d 2951 Pkcdelta.d 2725..2951 1..227 1135 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:43:59
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 12344400..12346653 1..2260 10755 98.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:30:36 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:43:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12453424..12455699 1..2276 11335 99.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:43:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 12461522..12463797 1..2276 11335 99.8 Plus
Blast to na_te.dros performed 2019-03-15 16:43:57
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy11 4428 gypsy11 GYPSY11 4428bp 3487..3601 163..52 151 66.9 Minus
S2 1735 S2 S2 1735bp 1427..1659 2240..2016 128 55.7 Minus
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 843..1016 2076..2257 124 58.4 Plus
mdg3 5519 mdg3 DMMDG3 5519bp Derived from X95908 (e990667) (Rel. 49, Last updated, Version 3). 3255..3359 2212..2110 114 60.4 Minus

RH45522.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:44:48 Download gff for RH45522.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 12344400..12346653 1..2260 95   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:47:40 Download gff for RH45522.complete
Subject Subject Range Query Range Percent Splice Strand
CG15927-RA 1..570 1446..2015 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:27:04 Download gff for RH45522.complete
Subject Subject Range Query Range Percent Splice Strand
CG15927-RA 1..570 1446..2015 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:09:13 Download gff for RH45522.complete
Subject Subject Range Query Range Percent Splice Strand
CG15927-RA 1..570 1446..2015 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:11:04 Download gff for RH45522.complete
Subject Subject Range Query Range Percent Splice Strand
CG15927-RA 1..570 1446..2015 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:48:12 Download gff for RH45522.complete
Subject Subject Range Query Range Percent Splice Strand
CG15927-RA 1..570 1446..2015 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:30:07 Download gff for RH45522.complete
Subject Subject Range Query Range Percent Splice Strand
CG15927-RA 1..570 1446..2015 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:27:04 Download gff for RH45522.complete
Subject Subject Range Query Range Percent Splice Strand
CG15927-RA 1..570 1446..2015 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:09:13 Download gff for RH45522.complete
Subject Subject Range Query Range Percent Splice Strand
CG15927-RA 1..945 1316..2260 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:11:04 Download gff for RH45522.complete
Subject Subject Range Query Range Percent Splice Strand
CG15927-RA 1..570 1446..2015 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:48:12 Download gff for RH45522.complete
Subject Subject Range Query Range Percent Splice Strand
CG15927-RA 1..955 1306..2260 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:44:48 Download gff for RH45522.complete
Subject Subject Range Query Range Percent Splice Strand
X 12453424..12455683 1..2260 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:44:48 Download gff for RH45522.complete
Subject Subject Range Query Range Percent Splice Strand
X 12453424..12455683 1..2260 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:44:48 Download gff for RH45522.complete
Subject Subject Range Query Range Percent Splice Strand
X 12453424..12455683 1..2260 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:09:13 Download gff for RH45522.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12347457..12349716 1..2260 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:47:38 Download gff for RH45522.complete
Subject Subject Range Query Range Percent Splice Strand
X 12461522..12463781 1..2260 99   Plus

RH45522.pep Sequence

Translation from 1445 to 2014

> RH45522.pep
MHILAYLILSLFGLVESYGHQPVLRNIIKVRASGFMPFESDLLLPLNILR
QLQSHDRSSRYIGQRPKPIVRPKVKQQIRLERANPLREAKGVQLYNLIDD
DGELLLNLKVHNEQKGTAPANYQEEKYQSRYQSYDSPWMPSKWRPTSEFL
GVTSSSPRPLPLHQYLGQNNNRIDQNTAKRRRQDIWPHK*

RH45522.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:23:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19395-PA 192 GF19395-PA 9..192 8..189 675 74.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:23:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17720-PA 190 GG17720-PA 1..190 1..189 882 89.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:23:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17963-PA 180 GH17963-PA 28..167 26..169 335 49.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:23:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG15927-PB 189 CG15927-PB 1..189 1..189 996 100 Plus
CG15927-PA 189 CG15927-PA 1..189 1..189 996 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:23:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21642-PA 216 GI21642-PA 39..205 22..182 403 53.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:23:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25255-PA 153 GL25255-PA 1..153 36..189 393 60.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:23:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14033-PA 215 GA14033-PA 26..215 21..189 488 63 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:23:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11563-PA 190 GM11563-PA 1..190 1..189 929 94.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:23:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16880-PA 201 GJ16880-PA 14..190 4..182 398 49.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:23:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16494-PA 223 GK16494-PA 3..223 1..189 393 44.7 Plus
Dwil\GK18058-PA 212 GK18058-PA 6..212 11..189 385 47.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:23:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17009-PA 193 GE17009-PA 1..193 1..189 859 88.1 Plus

RH45522.hyp Sequence

Translation from 1445 to 2014

> RH45522.hyp
MHILAYLILSLFGLVESYGHQPVLRNIIKVRASGFMPFESDLLLPLNILR
QLQSHDRSSRYIGQRPKPIVRPKVKQQIRLERANPLREAKGVQLYNLIDD
DGELLLNLKVHNEQKGTAPANYQEEKYQSRYQSYDSPWMPSKWRPTSEFL
GVTSSSPRPLPLHQYLGQNNNRIDQNTAKRRRQDIWPHK*

RH45522.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG15927-PB 189 CG15927-PB 1..189 1..189 996 100 Plus
CG15927-PA 189 CG15927-PA 1..189 1..189 996 100 Plus