BDGP Sequence Production Resources |
Search the DGRC for RH47216
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 472 |
Well: | 16 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG33506-RA |
Protein status: | RH47216.pep: gold |
Sequenced Size: | 1066 |
Gene | Date | Evidence |
---|---|---|
CG33506 | 2008-04-29 | Release 5.5 accounting |
CG33506 | 2008-04-29 | Picked prior to 5.5 |
CG33506 | 2008-08-15 | Release 5.9 accounting |
CG33506 | 2008-12-18 | 5.12 accounting |
1066 bp assembled on 2007-11-15
GenBank Submission: BT031299
> RH47216.complete GACAAAACAATAAGTGCTGAAATGTTGCCGAAATTAAAAACCGGTGGAGG GTTCTTCTCCTATTTTAAGACTGAAAAGGGCCGAAAACTCGTATTCTACG CGGCGGGAGCCACCACAGTGGGCCTCTTTCTTGGAAACTTCCTGCCGCAC ACATTCGGCCTGAAATATTACCGCGATTTCGTGCAATGCTACCAACACGG CGTGGGGCGTCCAGTGCCGGAGGCAGTGCAGCAGCGCCTGGAAAAGGCAT TGGATCAGCTGGGCGTGACGCCCTTTGAGCGAAAGTTTGTGAAGCCCTTC ACCGTCTTTGGATTCGATGTTTTCCAGGCGGGCACCACTAAGTTTCGATT TGGAGGCGCTTTGGGCATACCGGTGAACTATGGATACGACAGTCTGGAGG AGATTAAGCGGGCAGACATTCGGTTTAGAGACAAACAGATCAACTGGAGT TCTCCCAGCGGAAAACTGCTAGAGGAAGCCATCGTTTTGAATGAGGATGA ACAGATTTTCGGTCTTAGCAAGGCTGTTCTGCAGATGCAAACCCATCGGG TACTGCTCAACTCCATCTTTCCCAGCGTCAGCTTTCTTATGGTTTACACC ATGGGTCACTACCTCAACCTGCGGCTAGATCTCTTCGCCCGCCATGGAAG CGTGCGGTTTGTGCTCTACAGCATTCTGGGTCTGTTTGGCTTAGGGCTCT GGTCCTTCATGAAAGACTACAATCAGGTCTCTACGGACGCAGAGATTGAC CAGCGACTGGCCACGATGGGTCCCCAACTTGTGGCAGCTGGAGCTAGCTT TTACGACAAACATCTAAAGAAGAACATCGCGCTGAGGGAGCTGATTGGAA ATGACGTTTACACTGCACTGGGCAACGAAAACTATATGATTCGGCAAAAG TCCATGCCGCTAACAGCACGAAAATCTTTCTTCCTGGAGAAGCTGGAGGA ACTCAAAAAGGCGCAACAGCCTGAAACAGAGTAAACACACATTTATTGTT ACATTTTTATTGCCGGTTGAAGAAAATATATATGTTTCCAATAACTTTAC AAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 10745231..10745690 | 654..195 | 2285 | 99.8 | Minus |
chr2R | 21145070 | chr2R | 10744773..10745171 | 1050..652 | 1995 | 100 | Minus |
chr2R | 21145070 | chr2R | 10745750..10745942 | 194..2 | 950 | 99.5 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 14857905..14858364 | 654..195 | 2300 | 100 | Minus |
2R | 25286936 | 2R | 14857444..14857845 | 1053..652 | 2010 | 100 | Minus |
2R | 25286936 | 2R | 14858424..14858616 | 194..2 | 965 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 14859104..14859563 | 654..195 | 2300 | 100 | Minus |
2R | 25260384 | 2R | 14858643..14859044 | 1053..652 | 2010 | 100 | Minus |
2R | 25260384 | 2R | 14859623..14859815 | 194..2 | 965 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 228..271 | 57..15 | 118 | 77.3 | Minus |
Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 8463..8506 | 57..15 | 118 | 77.3 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 10745750..10745942 | 1..194 | 98 | Minus | |
chr2R | 10744773..10745171 | 652..1050 | 100 | <- | Minus |
chr2R | 10745234..10745690 | 195..651 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33506-RA | 1..963 | 22..984 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33506-RA | 1..963 | 22..984 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33506-RA | 1..963 | 22..984 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33506-RA | 1..963 | 22..984 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33506-RA | 1..963 | 22..984 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33506-RA | 1..1037 | 12..1048 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33506-RA | 17..1066 | 1..1050 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33506-RA | 24..1073 | 1..1050 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33506-RA | 1..1037 | 12..1048 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33506-RA | 24..1073 | 1..1050 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 14857447..14857845 | 652..1050 | 100 | <- | Minus |
2R | 14857908..14858364 | 195..651 | 100 | <- | Minus |
2R | 14858424..14858616 | 1..194 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 14857447..14857845 | 652..1050 | 100 | <- | Minus |
2R | 14857908..14858364 | 195..651 | 100 | <- | Minus |
2R | 14858424..14858616 | 1..194 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 14857447..14857845 | 652..1050 | 100 | <- | Minus |
2R | 14857908..14858364 | 195..651 | 100 | <- | Minus |
2R | 14858424..14858616 | 1..194 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 10745929..10746121 | 1..194 | 99 | Minus | |
arm_2R | 10744952..10745350 | 652..1050 | 100 | <- | Minus |
arm_2R | 10745413..10745869 | 195..651 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 14858646..14859044 | 652..1050 | 100 | <- | Minus |
2R | 14859107..14859563 | 195..651 | 100 | <- | Minus |
2R | 14859623..14859815 | 1..194 | 99 | Minus |
Translation from 3 to 983
> RH47216.hyp KTISAEMLPKLKTGGGFFSYFKTEKGRKLVFYAAGATTVGLFLGNFLPHT FGLKYYRDFVQCYQHGVGRPVPEAVQQRLEKALDQLGVTPFERKFVKPFT VFGFDVFQAGTTKFRFGGALGIPVNYGYDSLEEIKRADIRFRDKQINWSS PSGKLLEEAIVLNEDEQIFGLSKAVLQMQTHRVLLNSIFPSVSFLMVYTM GHYLNLRLDLFARHGSVRFVLYSILGLFGLGLWSFMKDYNQVSTDAEIDQ RLATMGPQLVAAGASFYDKHLKKNIALRELIGNDVYTALGNENYMIRQKS MPLTARKSFFLEKLEELKKAQQPETE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG33506-PA | 320 | CG33506-PA | 1..320 | 7..326 | 1657 | 100 | Plus |
Translation from 21 to 983
> RH47216.pep MLPKLKTGGGFFSYFKTEKGRKLVFYAAGATTVGLFLGNFLPHTFGLKYY RDFVQCYQHGVGRPVPEAVQQRLEKALDQLGVTPFERKFVKPFTVFGFDV FQAGTTKFRFGGALGIPVNYGYDSLEEIKRADIRFRDKQINWSSPSGKLL EEAIVLNEDEQIFGLSKAVLQMQTHRVLLNSIFPSVSFLMVYTMGHYLNL RLDLFARHGSVRFVLYSILGLFGLGLWSFMKDYNQVSTDAEIDQRLATMG PQLVAAGASFYDKHLKKNIALRELIGNDVYTALGNENYMIRQKSMPLTAR KSFFLEKLEELKKAQQPETE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12084-PA | 318 | GF12084-PA | 1..318 | 1..320 | 1455 | 84.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22390-PA | 320 | GG22390-PA | 1..320 | 1..320 | 1592 | 91.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22987-PA | 355 | GH22987-PA | 37..342 | 6..311 | 1338 | 79.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG33506-PA | 320 | CG33506-PA | 1..320 | 1..320 | 1657 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18955-PA | 319 | GI18955-PA | 4..310 | 6..312 | 1311 | 76.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10826-PA | 324 | GL10826-PA | 6..322 | 6..320 | 1463 | 85.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA24503-PA | 324 | GA24503-PA | 6..322 | 6..320 | 1461 | 84.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20173-PA | 320 | GM20173-PA | 1..320 | 1..320 | 1639 | 95.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25650-PA | 320 | GD25650-PA | 1..320 | 1..320 | 1646 | 96.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21561-PA | 319 | GJ21561-PA | 4..314 | 6..316 | 1333 | 76.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22123-PA | 323 | GK22123-PA | 1..319 | 2..319 | 1307 | 74.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE12279-PA | 320 | GE12279-PA | 1..320 | 1..320 | 1593 | 92.8 | Plus |