BDGP Sequence Production Resources |
Search the DGRC for RH47329
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 473 |
Well: | 29 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Ak6-RA |
Protein status: | RH47329.pep: gold |
Preliminary Size: | 590 |
Sequenced Size: | 748 |
Gene | Date | Evidence |
---|---|---|
CG8816 | 2001-12-17 | Blastp of sequenced clone |
CG8816 | 2002-01-01 | Sim4 clustering to Release 2 |
CG8816 | 2003-01-01 | Sim4 clustering to Release 3 |
CG8816 | 2008-04-29 | Release 5.5 accounting |
CG8816 | 2008-08-15 | Release 5.9 accounting |
CG8816 | 2008-12-18 | 5.12 accounting |
748 bp (748 high quality bases) assembled on 2001-12-17
GenBank Submission: AY071739
> RH47329.complete GACCATGTGTACTAAAGAAACTAAGTTGACAGCTCCGGTTCTTAAGTATA AACAACTTTGCTTCACGTGCTAAACGTTATAAGTAACAAAAATAAAAGGT TGTTTTCTGGTCCAATATATACCCAACTGATTAGTAAAAGCTATGTCAGA ACCAGAGCCAGATGTCAAGCCCAACATACTAATAACCGGAACTCCTGGAG CGGGGAAATCGTATTTATGCGAACGTATAGCCTCCGAACTAAAGTTTGAG TGGCTGGACTGCTCCAAAATCGCCAAGGAGAAAAATTTTGTAGAGGAATA TGACGAGGAGTACGATTGTCCCATTCTGGATGAAGAAAAGCTGATGGATC ACTTGGAGCCCCTGATGGCAAAGGGGGGCAACGTCGTCGAGTATCATGGC TGTGATTTCTTTCCAGAGCGCTGGTTTCAAGCCGTCTTCGTGGTAACCTG TCCCAATACAACACTCTACGATCGTCTGAAGGAGCGCAACTACAACGAAA AGAAACTGGCATCCAATATTCAGTGCGAGATCTTTGGAACCATTTTGGAA GAGGCCCGCGATTCCTACAAATCAGATATAGTATTCGAACTTAAGGGCGA AACAAAGGCAGATGCCCATATAAGCATAAAAACAGTCAAAAACTGGTATC GTATGTGGAAAAGAAAATAAAAAAGCGATTGGTACTTTGTTATACTCGTT ATCTTATGTATAAATGCTTAAACATTTGTGTCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 8456288..8456680 | 731..339 | 1965 | 100 | Minus |
chr2R | 21145070 | chr2R | 8456953..8457140 | 189..2 | 940 | 100 | Minus |
chr2R | 21145070 | chr2R | 8456734..8456886 | 340..188 | 765 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 12569015..12569407 | 731..339 | 1965 | 100 | Minus |
2R | 25286936 | 2R | 12569680..12569867 | 189..2 | 940 | 100 | Minus |
2R | 25286936 | 2R | 12569461..12569613 | 340..188 | 765 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 12570214..12570606 | 731..339 | 1965 | 100 | Minus |
2R | 25260384 | 2R | 12570879..12571066 | 189..2 | 940 | 100 | Minus |
2R | 25260384 | 2R | 12570660..12570812 | 340..188 | 765 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 8456287..8456678 | 341..732 | 99 | <- | Minus |
chr2R | 8456734..8456885 | 189..340 | 100 | <- | Minus |
chr2R | 8456954..8457140 | 1..188 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8816-RA | 1..528 | 143..670 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ak6-RA | 1..528 | 143..670 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ak6-RA | 1..528 | 143..670 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8816-RA | 1..528 | 143..670 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ak6-RA | 1..528 | 143..670 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8816-RA | 1..730 | 2..732 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ak6-RA | 1..730 | 2..732 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ak6-RA | 1..710 | 22..732 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8816-RA | 1..730 | 2..732 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ak6-RA | 1..710 | 22..732 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 12569014..12569405 | 341..732 | 99 | <- | Minus |
2R | 12569461..12569612 | 189..340 | 100 | <- | Minus |
2R | 12569681..12569867 | 1..188 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 12569014..12569405 | 341..732 | 99 | <- | Minus |
2R | 12569461..12569612 | 189..340 | 100 | <- | Minus |
2R | 12569681..12569867 | 1..188 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 12569014..12569405 | 341..732 | 99 | <- | Minus |
2R | 12569461..12569612 | 189..340 | 100 | <- | Minus |
2R | 12569681..12569867 | 1..188 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 8456519..8456910 | 341..732 | 99 | <- | Minus |
arm_2R | 8456966..8457117 | 189..340 | 100 | <- | Minus |
arm_2R | 8457186..8457372 | 1..188 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 12570213..12570604 | 341..732 | 99 | <- | Minus |
2R | 12570660..12570811 | 189..340 | 100 | <- | Minus |
2R | 12570880..12571066 | 1..188 | 99 | Minus |
Translation from 142 to 669
> RH47329.pep MSEPEPDVKPNILITGTPGAGKSYLCERIASELKFEWLDCSKIAKEKNFV EEYDEEYDCPILDEEKLMDHLEPLMAKGGNVVEYHGCDFFPERWFQAVFV VTCPNTTLYDRLKERNYNEKKLASNIQCEIFGTILEEARDSYKSDIVFEL KGETKADAHISIKTVKNWYRMWKRK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11470-PA | 175 | GF11470-PA | 1..175 | 1..175 | 804 | 82.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22568-PA | 175 | GG22568-PA | 1..175 | 1..175 | 909 | 96.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19842-PA | 172 | GH19842-PA | 5..172 | 8..175 | 787 | 83.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Ak6-PA | 175 | CG8816-PA | 1..175 | 1..175 | 949 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20430-PA | 172 | GI20430-PA | 6..172 | 9..175 | 800 | 86.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21288-PA | 175 | GL21288-PA | 1..175 | 1..175 | 810 | 84 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21342-PA | 175 | GA21342-PA | 1..175 | 1..175 | 807 | 83.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20351-PA | 175 | GM20351-PA | 1..175 | 1..175 | 912 | 97.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25830-PA | 175 | GD25830-PA | 1..175 | 1..175 | 905 | 96 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20104-PA | 172 | GJ20104-PA | 6..172 | 9..175 | 804 | 86.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK23083-PA | 170 | GK23083-PA | 3..169 | 9..175 | 697 | 72.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE13438-PA | 175 | GE13438-PA | 1..175 | 1..175 | 908 | 96 | Plus |
Translation from 142 to 669
> RH47329.hyp MSEPEPDVKPNILITGTPGAGKSYLCERIASELKFEWLDCSKIAKEKNFV EEYDEEYDCPILDEEKLMDHLEPLMAKGGNVVEYHGCDFFPERWFQAVFV VTCPNTTLYDRLKERNYNEKKLASNIQCEIFGTILEEARDSYKSDIVFEL KGETKADAHISIKTVKNWYRMWKRK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Ak6-PA | 175 | CG8816-PA | 1..175 | 1..175 | 949 | 100 | Plus |