BDGP Sequence Production Resources |
Search the DGRC for RH48056
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 480 |
Well: | 56 |
Vector: | pFlc-1 |
Associated Gene/Transcript | RpL34b-RA |
Protein status: | RH48056.pep: gold |
Preliminary Size: | 771 |
Sequenced Size: | 667 |
Gene | Date | Evidence |
---|---|---|
CG9354 | 2002-01-01 | Sim4 clustering to Release 2 |
CG9354 | 2002-02-27 | Blastp of sequenced clone |
CG9354 | 2003-01-01 | Sim4 clustering to Release 3 |
RpL34b | 2008-04-29 | Release 5.5 accounting |
RpL34b | 2008-08-15 | Release 5.9 accounting |
RpL34b | 2008-12-18 | 5.12 accounting |
667 bp (667 high quality bases) assembled on 2002-02-27
GenBank Submission: AY089676
> RH48056.complete GAAGTTCACGTCGTGCGCGAACAGGGTTGCCACCTTTCTTTCTAGTTTCG TCTCTTTGAGCAACAACAACAGCAAAATGGTCCAACGTCTGACGCTCCGG AGACGCCTGTCCTACAACACACGCTCCAACAAGCGGCGCATTGTTCGCAC GCCCGGTGGTCGTCTGGTTTACCAGTATGTGAAGAAGAACCCCACCGTGC CCCGTTGCGGCCAGTGCAAGGAGAAGTTGAAGGGTATCACCCCCTCCCGC CCCAGCGAGCGCCCCCGCATGTCCAAGCGCCTGAAGACCGTGTCCAGGAC CTACGGTGGAGTGCTGTGCCACAGCTGCCTGCGCGAGCGTATCGTGCGCG CCTTCCTCATCGAGGAGCAGAAGATCGTCAAGGCCCTGAAGAGCCAGCGC GAGGCGCTCGTCAAGCCGGTGAAGGCCCCCAAGGCCAAGCCCGAGCCCAA GAAGAAGCCCGCTGCTGGAGCCAAGGGAACCAAGGCCGGTGCCGGCAAGG TCACCAAGGGTGGTGCTGGCGCCAAGGGAGCCGCTGGCAAGAAGCCCGGC CAGAAGCCAGCCGCTGGCAAGCCCAGGAAGTAAACAGCCCACGCAACGAG TTCGGTGTACTGCTAAATAACTTTTAAAATAAATTGGTTTTTTCCAACTG GAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RpL34b-RB | 883 | RpL34b-RB | 87..737 | 2..652 | 3255 | 100 | Plus |
RpL34b.a | 803 | RpL34b.a | 36..689 | 2..652 | 3200 | 99.5 | Plus |
RpL34b-RA | 991 | RpL34b-RA | 252..845 | 59..652 | 2970 | 100 | Plus |
RpL34b-RA | 991 | RpL34b-RA | 22..80 | 2..60 | 295 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 5226202..5226711 | 651..142 | 2550 | 100 | Minus |
chr3R | 27901430 | chr3R | 21881621..21881903 | 424..142 | 830 | 86.2 | Minus |
chr3R | 27901430 | chr3R | 5226775..5226857 | 141..59 | 415 | 100 | Minus |
chr3R | 27901430 | chr3R | 5227029..5227087 | 60..2 | 295 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 9400368..9400878 | 652..142 | 2555 | 100 | Minus |
3R | 32079331 | 3R | 26058635..26058917 | 424..142 | 830 | 86.2 | Minus |
3R | 32079331 | 3R | 9400942..9401024 | 141..59 | 415 | 100 | Minus |
3R | 32079331 | 3R | 9401196..9401254 | 60..2 | 295 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 9141199..9141709 | 652..142 | 2555 | 100 | Minus |
3R | 31820162 | 3R | 25799466..25799748 | 424..142 | 830 | 86.2 | Minus |
3R | 31820162 | 3R | 9141773..9141855 | 141..59 | 415 | 100 | Minus |
3R | 31820162 | 3R | 9142027..9142085 | 60..2 | 295 | 100 | Minus |
3R | 31820162 | 3R | 25799811..25799878 | 141..74 | 175 | 83.8 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 5226775..5226855 | 61..141 | 100 | <- | Minus |
chr3R | 5227029..5227087 | 1..60 | 98 | Minus | |
chr3R | 5226202..5226711 | 142..651 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL34b-RA | 1..507 | 77..583 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL34b-RA | 1..507 | 77..583 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL34b-RA | 1..507 | 77..583 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL34b-RA | 1..507 | 77..583 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL34b-RA | 1..507 | 77..583 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL34b-RB | 2..652 | 1..651 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL34b-RB | 2..652 | 1..651 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL34b-RB | 1..622 | 30..651 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL34b-RB | 2..652 | 1..651 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL34b-RB | 1..622 | 30..651 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9400369..9400878 | 142..651 | 100 | <- | Minus |
3R | 9400942..9401022 | 61..141 | 100 | <- | Minus |
3R | 9401196..9401254 | 1..60 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9400369..9400878 | 142..651 | 100 | <- | Minus |
3R | 9400942..9401022 | 61..141 | 100 | <- | Minus |
3R | 9401196..9401254 | 1..60 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9400369..9400878 | 142..651 | 100 | <- | Minus |
3R | 9400942..9401022 | 61..141 | 100 | <- | Minus |
3R | 9401196..9401254 | 1..60 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 5226091..5226600 | 142..651 | 100 | <- | Minus |
arm_3R | 5226664..5226744 | 61..141 | 100 | <- | Minus |
arm_3R | 5226918..5226976 | 1..60 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9141200..9141709 | 142..651 | 100 | <- | Minus |
3R | 9141773..9141853 | 61..141 | 100 | <- | Minus |
3R | 9142027..9142085 | 1..60 | 98 | Minus |
Translation from 0 to 582
> RH48056.hyp KFTSCANRVATFLSSFVSLSNNNSKMVQRLTLRRRLSYNTRSNKRRIVRT PGGRLVYQYVKKNPTVPRCGQCKEKLKGITPSRPSERPRMSKRLKTVSRT YGGVLCHSCLRERIVRAFLIEEQKIVKALKSQREALVKPVKAPKAKPEPK KKPAAGAKGTKAGAGKVTKGGAGAKGAAGKKPGQKPAAGKPRK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RpL34b-PD | 168 | CG9354-PD | 1..168 | 26..193 | 864 | 100 | Plus |
RpL34b-PC | 168 | CG9354-PC | 1..168 | 26..193 | 864 | 100 | Plus |
RpL34b-PA | 168 | CG9354-PA | 1..168 | 26..193 | 864 | 100 | Plus |
RpL34b-PB | 168 | CG9354-PB | 1..168 | 26..193 | 864 | 100 | Plus |
RpL34a-PC | 162 | CG6090-PC | 1..153 | 26..187 | 618 | 82.7 | Plus |
Translation from 76 to 582
> RH48056.pep MVQRLTLRRRLSYNTRSNKRRIVRTPGGRLVYQYVKKNPTVPRCGQCKEK LKGITPSRPSERPRMSKRLKTVSRTYGGVLCHSCLRERIVRAFLIEEQKI VKALKSQREALVKPVKAPKAKPEPKKKPAAGAKGTKAGAGKVTKGGAGAK GAAGKKPGQKPAAGKPRK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17768-PA | 167 | GF17768-PA | 1..115 | 1..115 | 560 | 95.7 | Plus |
Dana\GF18218-PA | 157 | GF18218-PA | 1..110 | 1..110 | 535 | 93.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17378-PA | 168 | GG17378-PA | 1..168 | 1..168 | 832 | 100 | Plus |
Dere\GG12199-PA | 162 | GG12199-PA | 1..111 | 1..111 | 567 | 99.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18140-PA | 158 | GH18140-PA | 1..111 | 1..111 | 549 | 96.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RpL34b-PD | 168 | CG9354-PD | 1..168 | 1..168 | 864 | 100 | Plus |
RpL34b-PC | 168 | CG9354-PC | 1..168 | 1..168 | 864 | 100 | Plus |
RpL34b-PA | 168 | CG9354-PA | 1..168 | 1..168 | 864 | 100 | Plus |
RpL34b-PB | 168 | CG9354-PB | 1..168 | 1..168 | 864 | 100 | Plus |
RpL34a-PC | 162 | CG6090-PC | 1..153 | 1..162 | 618 | 82.7 | Plus |
RpL34a-PB | 162 | CG6090-PB | 1..153 | 1..162 | 618 | 82.7 | Plus |
RpL34a-PA | 162 | CG6090-PA | 1..153 | 1..162 | 618 | 82.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22901-PA | 158 | GI22901-PA | 1..153 | 1..162 | 554 | 76.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13673-PA | 170 | GL13673-PA | 1..170 | 1..168 | 603 | 77.8 | Plus |
Dper\GL22011-PA | 159 | GL22011-PA | 1..152 | 1..160 | 567 | 82.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA26986-PA | 170 | GA26986-PA | 1..170 | 1..168 | 603 | 77.8 | Plus |
Dpse\GA27345-PA | 159 | GA27345-PA | 1..152 | 1..160 | 567 | 82.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23916-PA | 130 | GM23916-PA | 1..130 | 1..130 | 655 | 99.2 | Plus |
Dsec\GM26264-PA | 164 | GM26264-PA | 1..164 | 1..168 | 610 | 93.5 | Plus |
Dsec\GM10197-PA | 162 | GM10197-PA | 1..111 | 1..111 | 561 | 98.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20801-PA | 168 | GD20801-PA | 1..168 | 1..168 | 825 | 98.8 | Plus |
Dsim\GD18147-PA | 162 | GD18147-PA | 1..111 | 1..111 | 566 | 99.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23314-PA | 158 | GJ23314-PA | 1..154 | 1..163 | 556 | 77.9 | Plus |