BDGP Sequence Production Resources |
Search the DGRC for RH48239
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 482 |
Well: | 39 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Arpc5-RA |
Protein status: | RH48239.pep: gold |
Preliminary Size: | 750 |
Sequenced Size: | 801 |
Gene | Date | Evidence |
---|---|---|
CG9881 | 2002-01-01 | Sim4 clustering to Release 2 |
CG9881 | 2002-02-27 | Blastp of sequenced clone |
CG9881 | 2003-01-01 | Sim4 clustering to Release 3 |
p16-ARC | 2008-04-29 | Release 5.5 accounting |
p16-ARC | 2008-08-15 | Release 5.9 accounting |
p16-ARC | 2008-12-18 | 5.12 accounting |
801 bp (801 high quality bases) assembled on 2002-02-27
GenBank Submission: AY089678
> RH48239.complete GCCTCATCTGTTTTGCCTTGCCGGATTTTGTGATTCATATTTTTGTAGAG AAAAGTGGTGGGAATTTAGCGAAAACATGGCCAAAAACACGTCCAGCAAC GCGTTCCGCAAGATCGATGTGGACCAGTACAATGAGGACAACTTCCGGGA GGATGATGGGGTGGAGAGCGCGGCAGCCGGTCCGGATGAGAGCGAGATTA CGACGCTGCTGACGCAGGGAAAATCCGTGGAGGCGCTCCTGAGTGCGCTG CAGAATGCCCCGCTGCGCTGCAAGAACCAGAATGTGAAGGACCACGCCCT GAACATCACGCTGCGGGTGCTGCTGTCCATCAAGTCGACGCAAATGGACC AGGCCATCGACACCTTGGACCAGAACGACCTAATAGACGTGCTGATGAAG TACATATATCGGGGATTCGAGATCCCCTCGGAGGGCTCCAGTGGCCACCT GCTGCAGTGGCATGAGAAGGCCTTCGCCAAGGGAGGAGTGGGCTGCATTG TCCGCGTGCTGTCCGACACAAATCGCGCCTAGAGGAGATCAGCACAGCCA AAGGCGGTCATAGAGTCACTACCCCAACTGTTCCCTGCCCCATAAACCGA TTCATACGCATCGCGGAGCATTTAATCAACACAGGATTGGAGCACTGGAC ACCACATCCTTATCTTCGGGATTTGCCACGCCCCAGCTGGAACCCACTTC TGTTTCTTCGCCGCAATACAAATGACGTTTTCCAAATTAGATTTTAACTG GTATCCAAGTATTAAAGTTTTTATTACGAAAGGTCAAAAAAAAAAAAAAA A
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
p16-ARC-RA | 1076 | p16-ARC-RA | 145..926 | 3..784 | 3910 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 2580096..2580386 | 1..289 | 98 | -> | Plus |
chr2L | 2580449..2580943 | 290..785 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
p16-ARC-RA | 1..456 | 77..532 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
p16-ARC-RA | 1..456 | 77..532 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Arpc5-RA | 1..456 | 77..532 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
p16-ARC-RA | 1..456 | 77..532 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Arpc5-RA | 1..456 | 77..532 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
p16-ARC-RA | 1..762 | 1..760 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
p16-ARC-RA | 1..762 | 1..760 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Arpc5-RA | 2..785 | 2..784 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
p16-ARC-RA | 1..762 | 1..760 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Arpc5-RA | 2..785 | 2..784 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 2580644..2581138 | 290..785 | 99 | Plus | |
2L | 2580291..2580581 | 1..289 | 99 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 2580644..2581138 | 290..785 | 99 | Plus | |
2L | 2580291..2580581 | 1..289 | 99 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 2580644..2581138 | 290..785 | 99 | Plus | |
2L | 2580291..2580581 | 1..289 | 99 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 2580291..2580581 | 1..289 | 99 | -> | Plus |
arm_2L | 2580644..2581138 | 290..785 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 2580291..2580581 | 1..289 | 99 | -> | Plus |
2L | 2580644..2581138 | 290..785 | 99 | Plus |
Translation from 0 to 531
> RH48239.hyp ATHLFCLAGFCDSYFCREKWWEFSENMAKNTSSNAFRKIDVDQYNEDNFR EDDGVESAAAGPDESEITTLLTQGKSVEALLSALQNAPLRCKNQNVKDHA LNITLRVLLSIKSTQMDQAIDTLDQNDLIDVLMKYIYRGFEIPSEGSSGH LLQWHEKAFAKGGVGCIVRVLSDTNRA*
Translation from 76 to 531
> RH48239.pep MAKNTSSNAFRKIDVDQYNEDNFREDDGVESAAAGPDESEITTLLTQGKS VEALLSALQNAPLRCKNQNVKDHALNITLRVLLSIKSTQMDQAIDTLDQN DLIDVLMKYIYRGFEIPSEGSSGHLLQWHEKAFAKGGVGCIVRVLSDTNR A*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF20591-PA | 151 | GF20591-PA | 1..151 | 1..151 | 792 | 98 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24865-PA | 151 | GG24865-PA | 1..151 | 1..151 | 792 | 98.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11156-PA | 151 | GH11156-PA | 1..151 | 1..151 | 742 | 90.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Arpc5-PB | 151 | CG9881-PB | 1..151 | 1..151 | 767 | 100 | Plus |
Arpc5-PA | 151 | CG9881-PA | 1..151 | 1..151 | 767 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17862-PA | 151 | GI17862-PA | 1..151 | 1..151 | 750 | 92.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL26566-PA | 133 | GL26566-PA | 16..133 | 34..151 | 601 | 94.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA22095-PA | 151 | GA22095-PA | 1..151 | 1..151 | 765 | 94.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18347-PA | 151 | GM18347-PA | 1..151 | 1..151 | 799 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23162-PA | 151 | GD23162-PA | 1..151 | 1..151 | 799 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17361-PA | 151 | GJ17361-PA | 1..151 | 1..151 | 731 | 90.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24566-PA | 151 | GK24566-PA | 1..151 | 1..151 | 765 | 94 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE18163-PA | 151 | GE18163-PA | 1..151 | 1..151 | 799 | 99.3 | Plus |