Clone RH48456 Report

Search the DGRC for RH48456

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:484
Well:56
Vector:pFlc-1
Associated Gene/TranscriptCG42708-RB
Protein status:RH48456.pep: gold
Sequenced Size:2292

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
nemy-RB 2009-06-22 Replacement based on scoring

Clone Sequence Records

RH48456.complete Sequence

2292 bp assembled on 2009-09-23

GenBank Submission: BT099834.1

> RH48456.complete
ATTTTGGCGGTGACGGGCCGCAAGTTTGCACAGTGAAAGAGCAGGATATA
CCTTATCGGAACGATGGGCGATCGTAGTTGGAACCTGCTGCAGTATGCCA
CCGAGAAGGCGCCAATACCACTGGACGGCTACACCGCCGAGGAGGCGGCC
GAGTTCAAGGACAGCATCAGGCAGAAGATCGTAGACGATCTGAAGTCCAT
GACGGGCGAGGAGCTGATAGAGCTGGTCAAGCAGAATGCTGCCAAGGTGG
AGGAGGAGAAGGTGGAGATTCCGCCCACGGAACCCCTATCCGGCACCGAG
GAGGGCAAGGAACGAGTGCAGGATGATGCGGATCTCATAGATGCCGGTAT
CATAGCCGAAATGGTCGCTGGACTGTGCACCAAAAGCCAGAAGGAGACGT
TCATCAAGGTGATAACGAAGTATATCAGCAGTCAGAGACGCCACTATTCG
ATGCGGCCCCATCGCGAGCAGGAGCAGCGAAATGCGGAGGATGTGCTATT
CGACATGTTCGCCAGCGAGGAGACGGGCCTCATCTCGATGGGCAAGTTCC
TGGCCGGGCTAAAGACCACCGGAATTCGCCGGAACGATCCGCGAGTGCGA
GAACTGATGGACAACTTGAAGAAAGTGCACAAGCTAAATAACTACGAGAC
GGGTTCTTCGGCGGAAACTCAGCATCTCAATCGAGAGACCTTCAAGGCTG
TGGTTGCCCCCAATATTGTGCTGATTGCCAAGGCCTTCCGGCAGCAGTTC
GTTATTCCCGACTTTACGAGTTTCGTCAAGGACATCGAGGATATTTACAA
TCGCTGCAAGACCAACACTTTGGGCAAGTTGGCCGACTACATTCCGCAGC
TGGCTCGCTATAATCCCGATTCCTGGGGCCTGAGCATCTGCACGATTGAT
GGCCAGCGCTTCTCCATCGGCGATGTGGATGTGCCCTTCACACTCCAGAG
TTGCAGTAAGCCGCTGACCTACGCCATTGCCCTGGAGAAACTGGGTCCCA
AGGTCGTGCACTCTTATGTGGGCCAGGAGCCGAGTGGCAGGAACTTCAAC
GAACTTGTTCTGGATCAGAACAAAAAGCCACACAATCCGATGATCAACGC
TGGTGCCATTCTGACGTGCTCCCTGATGAACGCCCTTGTCAAGCCGGACA
TGACCTCCGCTGAGATCTTCGACTACACCATGTCTTGGTTCAAACGGCTG
TCGGGCGGAGAGTATATCGGCTTTAATAATGCCGTATTCCTGTCCGAACG
CGAGGCTGCCGATCGGAACTATGCCCTGGGCTTCTACATGCGGGAGAACA
AGTGCTTCCCCAAGCGCACCAATCTCAAGGAGGTGATGGACTTTTACTTC
CAGTGCTGCTCCATGGAGACCAACTGCGAGGCAATGTCCGTAATCGCGGC
CAGTTTGGCCAATGGTGGCATCTGCCCCACCACCGAGGAGAAGGTGTTCC
GGCCGGAGGTAATCCGGGATGTGCTCTCGATTATGCACTCATGCGGTACA
TACGACTATTCCGGACAGTTCGCCTTCAAGGTGGGTCTGCCAGCCAAGTC
TGGAGTGAGTGGCGGCATGATGCTGGTCATCCCCAACGTAATGGGCATCT
TTGCCTGGTCTCCGCCCTTGGATCACTTAGGCAATACAGTGAGAGGACTA
CAGTTTTGTGAGGAGCTGGTCTCCATGTTCAATTTCCATCGCTACGACAA
CCTGAAGCATCTGTCCAACAAGAAGGATCCGCGGAAGCACCGCTACGAGA
CCAAGGGTCTGTCCATCGTGAATCTACTCTTTTCAGCTGCCAGCGGCGAT
GTTACAGCCTTGCGGCGTCATCGTCTCTCCGGAATGGATATCACTCTGGC
CGACTACGATGGTCGCACTGCCCTCCATTTGGCTGCGTCCGAAGGACACT
TGGAGTGCGTCAAGTTCCTGCTGGAACAGTGTCATGTACCACACAACCCC
AAGGATCGCTGGGGAAATCTGCCCGTGGATGAGGCAGAGAACTTCGGCCA
CTGTCACGTGGTGGAGTTCCTTCGCTCCTGGGCGGAGAAGGCCGACCAGT
CCAGCGAGGAGTGCAAGCCCGAGGCGGTGACCAGCAAGACACAAGCGGAT
GAGGAAATCTGCAGCACAAGCGACCTGGAGACCAGTCCGACAACCAGTCC
CATTCCCACTCCCGTGGAATCCGGATCCAGGGCAGGATCAGGACGGTCCA
GCCCGGTGCCATCGGATGCGGGCAGCACGGCGAGCGCCGGAAGCAGCATC
GATGACAAAACCAAGCCGGGACTATAAGCGTACAGAGATCCA

RH48456.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:49:36
Subject Length Description Subject Range Query Range Score Percent Strand
nemy-RB 2970 nemy-RB 1..2292 1..2292 11460 100 Plus
nemy.j 2817 nemy.j 274..2139 427..2292 9330 100 Plus
nemy.e 2927 nemy.e 416..2249 459..2292 9170 100 Plus
nemy.e 2927 nemy.e 1..416 14..429 2080 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:33:59
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 8558828..8559859 2104..1073 5040 99.2 Minus
chr2R 21145070 chr2R 8562256..8562683 428..1 2140 100 Minus
chr2R 21145070 chr2R 8559936..8560309 1072..699 1870 100 Minus
chr2R 21145070 chr2R 8560372..8560611 698..459 1185 99.6 Minus
chr2R 21145070 chr2R 8558434..8558623 2291..2102 950 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:31:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:33:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12671556..12672587 2104..1073 5160 100 Minus
2R 25286936 2R 12674991..12675418 428..1 2140 100 Minus
2R 25286936 2R 12672664..12673037 1072..699 1870 100 Minus
2R 25286936 2R 12673100..12673339 698..459 1200 100 Minus
2R 25286936 2R 12671161..12671351 2292..2102 955 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:46:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 12672755..12673786 2104..1073 5160 100 Minus
2R 25260384 2R 12676190..12676617 428..1 2140 100 Minus
2R 25260384 2R 12673863..12674236 1072..699 1870 100 Minus
2R 25260384 2R 12674299..12674538 698..459 1200 100 Minus
2R 25260384 2R 12672360..12672550 2292..2102 955 100 Minus
2R 25260384 2R 12675098..12675129 458..427 160 100 Minus
Blast to na_te.dros performed on 2019-03-16 21:33:58 has no hits.

RH48456.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:34:40 Download gff for RH48456.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 8559936..8560309 699..1072 100 <- Minus
chr2R 8560372..8560611 459..698 99 <- Minus
chr2R 8561168..8561197 429..458 100 <- Minus
chr2R 8558434..8558621 2104..2291 100 <- Minus
chr2R 8558829..8559859 1073..2103 99 <- Minus
chr2R 8562256..8562683 1..428 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:55:24 Download gff for RH48456.complete
Subject Subject Range Query Range Percent Splice Strand
nemy-RB 1..2214 64..2277 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:33:20 Download gff for RH48456.complete
Subject Subject Range Query Range Percent Splice Strand
CG42708-RB 1..2214 64..2277 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:57:22 Download gff for RH48456.complete
Subject Subject Range Query Range Percent Splice Strand
CG42708-RB 1..2214 64..2277 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:23:56 Download gff for RH48456.complete
Subject Subject Range Query Range Percent Splice Strand
CG42708-RB 1..2214 64..2277 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-09-25 08:14:32 Download gff for RH48456.complete
Subject Subject Range Query Range Percent Splice Strand
nemy-RB 1..2291 1..2291 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:33:20 Download gff for RH48456.complete
Subject Subject Range Query Range Percent Splice Strand
CG42708-RB 1..2291 1..2291 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:57:22 Download gff for RH48456.complete
Subject Subject Range Query Range Percent Splice Strand
CG42708-RB 1..2291 1..2291 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:23:56 Download gff for RH48456.complete
Subject Subject Range Query Range Percent Splice Strand
CG42708-RB 1..2291 1..2291 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:34:40 Download gff for RH48456.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12671162..12671349 2104..2291 100 <- Minus
2R 12671557..12672587 1073..2103 100 <- Minus
2R 12672664..12673037 699..1072 100 <- Minus
2R 12673100..12673339 459..698 100 <- Minus
2R 12673899..12673928 429..458 100 <- Minus
2R 12674991..12675418 1..428 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:34:40 Download gff for RH48456.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12671162..12671349 2104..2291 100 <- Minus
2R 12671557..12672587 1073..2103 100 <- Minus
2R 12672664..12673037 699..1072 100 <- Minus
2R 12673100..12673339 459..698 100 <- Minus
2R 12673899..12673928 429..458 100 <- Minus
2R 12674991..12675418 1..428 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:34:40 Download gff for RH48456.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12671162..12671349 2104..2291 100 <- Minus
2R 12671557..12672587 1073..2103 100 <- Minus
2R 12672664..12673037 699..1072 100 <- Minus
2R 12673100..12673339 459..698 100 <- Minus
2R 12673899..12673928 429..458 100 <- Minus
2R 12674991..12675418 1..428 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:57:22 Download gff for RH48456.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8558667..8558854 2104..2291 100 <- Minus
arm_2R 8559062..8560092 1073..2103 100 <- Minus
arm_2R 8560169..8560542 699..1072 100 <- Minus
arm_2R 8560605..8560844 459..698 100 <- Minus
arm_2R 8561404..8561433 429..458 100 <- Minus
arm_2R 8562496..8562923 1..428 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:17:38 Download gff for RH48456.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12672756..12673786 1073..2103 100 <- Minus
2R 12673863..12674236 699..1072 100 <- Minus
2R 12674299..12674538 459..698 100 <- Minus
2R 12675098..12675127 429..458 100 <- Minus
2R 12676190..12676617 1..428 100   Minus
2R 12672361..12672548 2104..2291 100 <- Minus

RH48456.pep Sequence

Translation from 63 to 2276

> RH48456.pep
MGDRSWNLLQYATEKAPIPLDGYTAEEAAEFKDSIRQKIVDDLKSMTGEE
LIELVKQNAAKVEEEKVEIPPTEPLSGTEEGKERVQDDADLIDAGIIAEM
VAGLCTKSQKETFIKVITKYISSQRRHYSMRPHREQEQRNAEDVLFDMFA
SEETGLISMGKFLAGLKTTGIRRNDPRVRELMDNLKKVHKLNNYETGSSA
ETQHLNRETFKAVVAPNIVLIAKAFRQQFVIPDFTSFVKDIEDIYNRCKT
NTLGKLADYIPQLARYNPDSWGLSICTIDGQRFSIGDVDVPFTLQSCSKP
LTYAIALEKLGPKVVHSYVGQEPSGRNFNELVLDQNKKPHNPMINAGAIL
TCSLMNALVKPDMTSAEIFDYTMSWFKRLSGGEYIGFNNAVFLSEREAAD
RNYALGFYMRENKCFPKRTNLKEVMDFYFQCCSMETNCEAMSVIAASLAN
GGICPTTEEKVFRPEVIRDVLSIMHSCGTYDYSGQFAFKVGLPAKSGVSG
GMMLVIPNVMGIFAWSPPLDHLGNTVRGLQFCEELVSMFNFHRYDNLKHL
SNKKDPRKHRYETKGLSIVNLLFSAASGDVTALRRHRLSGMDITLADYDG
RTALHLAASEGHLECVKFLLEQCHVPHNPKDRWGNLPVDEAENFGHCHVV
EFLRSWAEKADQSSEECKPEAVTSKTQADEEICSTSDLETSPTTSPIPTP
VESGSRAGSGRSSPVPSDAGSTASAGSSIDDKTKPGL*

RH48456.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:47:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11462-PA 725 GF11462-PA 109..725 123..737 3198 95 Plus
Dana\lyso-PA 655 GF19463-PA 570..653 571..655 155 42.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:47:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22560-PA 716 GG22560-PA 102..716 123..737 3322 98.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:47:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19960-PA 711 GH19960-PA 104..711 124..737 2972 88.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:33:53
Subject Length Description Subject Range Query Range Score Percent Strand
GLS-PB 737 CG8772-PB 1..737 1..737 3859 100 Plus
GLS-PK 727 CG42708-PK 1..727 1..737 3783 98.6 Plus
GLS-PC 658 CG8772-PC 44..658 123..737 3247 100 Plus
GLS-PD 716 CG8772-PD 102..716 123..737 3247 100 Plus
GLS-PF 671 CG8772-PF 23..671 79..737 3226 93.6 Plus
GLS-PE 648 CG8772-PE 44..648 133..737 3192 100 Plus
GLS-PA 706 CG8772-PA 102..706 133..737 3192 100 Plus
GLS-PI 701 CG8772-PI 44..701 133..737 3128 91.9 Plus
GLS-PJ 712 CG42708-PJ 39..633 133..731 2947 94.3 Plus
GLS-PH 775 CG8772-PH 102..696 133..731 2947 94.3 Plus
GLS-PJ 712 CG42708-PJ 655..712 680..737 290 98.3 Plus
GLS-PH 775 CG8772-PH 718..775 680..737 290 98.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:47:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19918-PA 727 GI19918-PA 120..727 123..737 2948 88.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:47:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17734-PA 719 GL17734-PA 114..719 123..737 3071 91.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:47:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21309-PF 755 GA21309-PF 3..755 1..737 3539 86.3 Plus
Dpse\GA21309-PA 719 GA21309-PA 114..719 123..737 3068 91.1 Plus
Dpse\GA21309-PD 632 GA21309-PD 27..632 123..737 3059 91.1 Plus
Dpse\GA21309-PB 746 GA21309-PB 114..746 123..737 3033 87.2 Plus
Dpse\GA21309-PC 622 GA21309-PC 16..622 122..737 3010 89.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:47:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20343-PA 716 GM20343-PA 102..716 123..737 3349 99.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:47:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25822-PA 716 GD25822-PA 102..716 123..737 3361 99.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:47:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15085-PA 706 GJ15085-PA 102..706 123..737 2957 89.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21608-PA 701 GK21608-PA 103..701 123..737 3034 90.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13430-PA 716 GE13430-PA 102..716 123..737 3326 98.7 Plus

RH48456.hyp Sequence

Translation from 63 to 2276

> RH48456.hyp
MGDRSWNLLQYATEKAPIPLDGYTAEEAAEFKDSIRQKIVDDLKSMTGEE
LIELVKQNAAKVEEEKVEIPPTEPLSGTEEGKERVQDDADLIDAGIIAEM
VAGLCTKSQKETFIKVITKYISSQRRHYSMRPHREQEQRNAEDVLFDMFA
SEETGLISMGKFLAGLKTTGIRRNDPRVRELMDNLKKVHKLNNYETGSSA
ETQHLNRETFKAVVAPNIVLIAKAFRQQFVIPDFTSFVKDIEDIYNRCKT
NTLGKLADYIPQLARYNPDSWGLSICTIDGQRFSIGDVDVPFTLQSCSKP
LTYAIALEKLGPKVVHSYVGQEPSGRNFNELVLDQNKKPHNPMINAGAIL
TCSLMNALVKPDMTSAEIFDYTMSWFKRLSGGEYIGFNNAVFLSEREAAD
RNYALGFYMRENKCFPKRTNLKEVMDFYFQCCSMETNCEAMSVIAASLAN
GGICPTTEEKVFRPEVIRDVLSIMHSCGTYDYSGQFAFKVGLPAKSGVSG
GMMLVIPNVMGIFAWSPPLDHLGNTVRGLQFCEELVSMFNFHRYDNLKHL
SNKKDPRKHRYETKGLSIVNLLFSAASGDVTALRRHRLSGMDITLADYDG
RTALHLAASEGHLECVKFLLEQCHVPHNPKDRWGNLPVDEAENFGHCHVV
EFLRSWAEKADQSSEECKPEAVTSKTQADEEICSTSDLETSPTTSPIPTP
VESGSRAGSGRSSPVPSDAGSTASAGSSIDDKTKPGL*

RH48456.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:58:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG42708-PB 737 CG8772-PB 1..737 1..737 3859 100 Plus
CG42708-PK 727 CG42708-PK 1..727 1..737 3783 98.6 Plus
CG42708-PC 658 CG8772-PC 44..658 123..737 3247 100 Plus
CG42708-PD 716 CG8772-PD 102..716 123..737 3247 100 Plus
CG42708-PF 671 CG8772-PF 23..671 79..737 3226 93.6 Plus