BDGP Sequence Production Resources |
Search the DGRC for RH48456
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 484 |
Well: | 56 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG42708-RB |
Protein status: | RH48456.pep: gold |
Sequenced Size: | 2292 |
Gene | Date | Evidence |
---|---|---|
nemy-RB | 2009-06-22 | Replacement based on scoring |
2292 bp assembled on 2009-09-23
GenBank Submission: BT099834.1
> RH48456.complete ATTTTGGCGGTGACGGGCCGCAAGTTTGCACAGTGAAAGAGCAGGATATA CCTTATCGGAACGATGGGCGATCGTAGTTGGAACCTGCTGCAGTATGCCA CCGAGAAGGCGCCAATACCACTGGACGGCTACACCGCCGAGGAGGCGGCC GAGTTCAAGGACAGCATCAGGCAGAAGATCGTAGACGATCTGAAGTCCAT GACGGGCGAGGAGCTGATAGAGCTGGTCAAGCAGAATGCTGCCAAGGTGG AGGAGGAGAAGGTGGAGATTCCGCCCACGGAACCCCTATCCGGCACCGAG GAGGGCAAGGAACGAGTGCAGGATGATGCGGATCTCATAGATGCCGGTAT CATAGCCGAAATGGTCGCTGGACTGTGCACCAAAAGCCAGAAGGAGACGT TCATCAAGGTGATAACGAAGTATATCAGCAGTCAGAGACGCCACTATTCG ATGCGGCCCCATCGCGAGCAGGAGCAGCGAAATGCGGAGGATGTGCTATT CGACATGTTCGCCAGCGAGGAGACGGGCCTCATCTCGATGGGCAAGTTCC TGGCCGGGCTAAAGACCACCGGAATTCGCCGGAACGATCCGCGAGTGCGA GAACTGATGGACAACTTGAAGAAAGTGCACAAGCTAAATAACTACGAGAC GGGTTCTTCGGCGGAAACTCAGCATCTCAATCGAGAGACCTTCAAGGCTG TGGTTGCCCCCAATATTGTGCTGATTGCCAAGGCCTTCCGGCAGCAGTTC GTTATTCCCGACTTTACGAGTTTCGTCAAGGACATCGAGGATATTTACAA TCGCTGCAAGACCAACACTTTGGGCAAGTTGGCCGACTACATTCCGCAGC TGGCTCGCTATAATCCCGATTCCTGGGGCCTGAGCATCTGCACGATTGAT GGCCAGCGCTTCTCCATCGGCGATGTGGATGTGCCCTTCACACTCCAGAG TTGCAGTAAGCCGCTGACCTACGCCATTGCCCTGGAGAAACTGGGTCCCA AGGTCGTGCACTCTTATGTGGGCCAGGAGCCGAGTGGCAGGAACTTCAAC GAACTTGTTCTGGATCAGAACAAAAAGCCACACAATCCGATGATCAACGC TGGTGCCATTCTGACGTGCTCCCTGATGAACGCCCTTGTCAAGCCGGACA TGACCTCCGCTGAGATCTTCGACTACACCATGTCTTGGTTCAAACGGCTG TCGGGCGGAGAGTATATCGGCTTTAATAATGCCGTATTCCTGTCCGAACG CGAGGCTGCCGATCGGAACTATGCCCTGGGCTTCTACATGCGGGAGAACA AGTGCTTCCCCAAGCGCACCAATCTCAAGGAGGTGATGGACTTTTACTTC CAGTGCTGCTCCATGGAGACCAACTGCGAGGCAATGTCCGTAATCGCGGC CAGTTTGGCCAATGGTGGCATCTGCCCCACCACCGAGGAGAAGGTGTTCC GGCCGGAGGTAATCCGGGATGTGCTCTCGATTATGCACTCATGCGGTACA TACGACTATTCCGGACAGTTCGCCTTCAAGGTGGGTCTGCCAGCCAAGTC TGGAGTGAGTGGCGGCATGATGCTGGTCATCCCCAACGTAATGGGCATCT TTGCCTGGTCTCCGCCCTTGGATCACTTAGGCAATACAGTGAGAGGACTA CAGTTTTGTGAGGAGCTGGTCTCCATGTTCAATTTCCATCGCTACGACAA CCTGAAGCATCTGTCCAACAAGAAGGATCCGCGGAAGCACCGCTACGAGA CCAAGGGTCTGTCCATCGTGAATCTACTCTTTTCAGCTGCCAGCGGCGAT GTTACAGCCTTGCGGCGTCATCGTCTCTCCGGAATGGATATCACTCTGGC CGACTACGATGGTCGCACTGCCCTCCATTTGGCTGCGTCCGAAGGACACT TGGAGTGCGTCAAGTTCCTGCTGGAACAGTGTCATGTACCACACAACCCC AAGGATCGCTGGGGAAATCTGCCCGTGGATGAGGCAGAGAACTTCGGCCA CTGTCACGTGGTGGAGTTCCTTCGCTCCTGGGCGGAGAAGGCCGACCAGT CCAGCGAGGAGTGCAAGCCCGAGGCGGTGACCAGCAAGACACAAGCGGAT GAGGAAATCTGCAGCACAAGCGACCTGGAGACCAGTCCGACAACCAGTCC CATTCCCACTCCCGTGGAATCCGGATCCAGGGCAGGATCAGGACGGTCCA GCCCGGTGCCATCGGATGCGGGCAGCACGGCGAGCGCCGGAAGCAGCATC GATGACAAAACCAAGCCGGGACTATAAGCGTACAGAGATCCA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
nemy-RB | 2970 | nemy-RB | 1..2292 | 1..2292 | 11460 | 100 | Plus |
nemy.j | 2817 | nemy.j | 274..2139 | 427..2292 | 9330 | 100 | Plus |
nemy.e | 2927 | nemy.e | 416..2249 | 459..2292 | 9170 | 100 | Plus |
nemy.e | 2927 | nemy.e | 1..416 | 14..429 | 2080 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 8558828..8559859 | 2104..1073 | 5040 | 99.2 | Minus |
chr2R | 21145070 | chr2R | 8562256..8562683 | 428..1 | 2140 | 100 | Minus |
chr2R | 21145070 | chr2R | 8559936..8560309 | 1072..699 | 1870 | 100 | Minus |
chr2R | 21145070 | chr2R | 8560372..8560611 | 698..459 | 1185 | 99.6 | Minus |
chr2R | 21145070 | chr2R | 8558434..8558623 | 2291..2102 | 950 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 12671556..12672587 | 2104..1073 | 5160 | 100 | Minus |
2R | 25286936 | 2R | 12674991..12675418 | 428..1 | 2140 | 100 | Minus |
2R | 25286936 | 2R | 12672664..12673037 | 1072..699 | 1870 | 100 | Minus |
2R | 25286936 | 2R | 12673100..12673339 | 698..459 | 1200 | 100 | Minus |
2R | 25286936 | 2R | 12671161..12671351 | 2292..2102 | 955 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 12672755..12673786 | 2104..1073 | 5160 | 100 | Minus |
2R | 25260384 | 2R | 12676190..12676617 | 428..1 | 2140 | 100 | Minus |
2R | 25260384 | 2R | 12673863..12674236 | 1072..699 | 1870 | 100 | Minus |
2R | 25260384 | 2R | 12674299..12674538 | 698..459 | 1200 | 100 | Minus |
2R | 25260384 | 2R | 12672360..12672550 | 2292..2102 | 955 | 100 | Minus |
2R | 25260384 | 2R | 12675098..12675129 | 458..427 | 160 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 8559936..8560309 | 699..1072 | 100 | <- | Minus |
chr2R | 8560372..8560611 | 459..698 | 99 | <- | Minus |
chr2R | 8561168..8561197 | 429..458 | 100 | <- | Minus |
chr2R | 8558434..8558621 | 2104..2291 | 100 | <- | Minus |
chr2R | 8558829..8559859 | 1073..2103 | 99 | <- | Minus |
chr2R | 8562256..8562683 | 1..428 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nemy-RB | 1..2214 | 64..2277 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42708-RB | 1..2214 | 64..2277 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42708-RB | 1..2214 | 64..2277 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42708-RB | 1..2214 | 64..2277 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nemy-RB | 1..2291 | 1..2291 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42708-RB | 1..2291 | 1..2291 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42708-RB | 1..2291 | 1..2291 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42708-RB | 1..2291 | 1..2291 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 12671162..12671349 | 2104..2291 | 100 | <- | Minus |
2R | 12671557..12672587 | 1073..2103 | 100 | <- | Minus |
2R | 12672664..12673037 | 699..1072 | 100 | <- | Minus |
2R | 12673100..12673339 | 459..698 | 100 | <- | Minus |
2R | 12673899..12673928 | 429..458 | 100 | <- | Minus |
2R | 12674991..12675418 | 1..428 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 12671162..12671349 | 2104..2291 | 100 | <- | Minus |
2R | 12671557..12672587 | 1073..2103 | 100 | <- | Minus |
2R | 12672664..12673037 | 699..1072 | 100 | <- | Minus |
2R | 12673100..12673339 | 459..698 | 100 | <- | Minus |
2R | 12673899..12673928 | 429..458 | 100 | <- | Minus |
2R | 12674991..12675418 | 1..428 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 12671162..12671349 | 2104..2291 | 100 | <- | Minus |
2R | 12671557..12672587 | 1073..2103 | 100 | <- | Minus |
2R | 12672664..12673037 | 699..1072 | 100 | <- | Minus |
2R | 12673100..12673339 | 459..698 | 100 | <- | Minus |
2R | 12673899..12673928 | 429..458 | 100 | <- | Minus |
2R | 12674991..12675418 | 1..428 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 8558667..8558854 | 2104..2291 | 100 | <- | Minus |
arm_2R | 8559062..8560092 | 1073..2103 | 100 | <- | Minus |
arm_2R | 8560169..8560542 | 699..1072 | 100 | <- | Minus |
arm_2R | 8560605..8560844 | 459..698 | 100 | <- | Minus |
arm_2R | 8561404..8561433 | 429..458 | 100 | <- | Minus |
arm_2R | 8562496..8562923 | 1..428 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 12672756..12673786 | 1073..2103 | 100 | <- | Minus |
2R | 12673863..12674236 | 699..1072 | 100 | <- | Minus |
2R | 12674299..12674538 | 459..698 | 100 | <- | Minus |
2R | 12675098..12675127 | 429..458 | 100 | <- | Minus |
2R | 12676190..12676617 | 1..428 | 100 | Minus | |
2R | 12672361..12672548 | 2104..2291 | 100 | <- | Minus |
Translation from 63 to 2276
> RH48456.pep MGDRSWNLLQYATEKAPIPLDGYTAEEAAEFKDSIRQKIVDDLKSMTGEE LIELVKQNAAKVEEEKVEIPPTEPLSGTEEGKERVQDDADLIDAGIIAEM VAGLCTKSQKETFIKVITKYISSQRRHYSMRPHREQEQRNAEDVLFDMFA SEETGLISMGKFLAGLKTTGIRRNDPRVRELMDNLKKVHKLNNYETGSSA ETQHLNRETFKAVVAPNIVLIAKAFRQQFVIPDFTSFVKDIEDIYNRCKT NTLGKLADYIPQLARYNPDSWGLSICTIDGQRFSIGDVDVPFTLQSCSKP LTYAIALEKLGPKVVHSYVGQEPSGRNFNELVLDQNKKPHNPMINAGAIL TCSLMNALVKPDMTSAEIFDYTMSWFKRLSGGEYIGFNNAVFLSEREAAD RNYALGFYMRENKCFPKRTNLKEVMDFYFQCCSMETNCEAMSVIAASLAN GGICPTTEEKVFRPEVIRDVLSIMHSCGTYDYSGQFAFKVGLPAKSGVSG GMMLVIPNVMGIFAWSPPLDHLGNTVRGLQFCEELVSMFNFHRYDNLKHL SNKKDPRKHRYETKGLSIVNLLFSAASGDVTALRRHRLSGMDITLADYDG RTALHLAASEGHLECVKFLLEQCHVPHNPKDRWGNLPVDEAENFGHCHVV EFLRSWAEKADQSSEECKPEAVTSKTQADEEICSTSDLETSPTTSPIPTP VESGSRAGSGRSSPVPSDAGSTASAGSSIDDKTKPGL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11462-PA | 725 | GF11462-PA | 109..725 | 123..737 | 3198 | 95 | Plus |
Dana\lyso-PA | 655 | GF19463-PA | 570..653 | 571..655 | 155 | 42.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22560-PA | 716 | GG22560-PA | 102..716 | 123..737 | 3322 | 98.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19960-PA | 711 | GH19960-PA | 104..711 | 124..737 | 2972 | 88.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
GLS-PB | 737 | CG8772-PB | 1..737 | 1..737 | 3859 | 100 | Plus |
GLS-PK | 727 | CG42708-PK | 1..727 | 1..737 | 3783 | 98.6 | Plus |
GLS-PC | 658 | CG8772-PC | 44..658 | 123..737 | 3247 | 100 | Plus |
GLS-PD | 716 | CG8772-PD | 102..716 | 123..737 | 3247 | 100 | Plus |
GLS-PF | 671 | CG8772-PF | 23..671 | 79..737 | 3226 | 93.6 | Plus |
GLS-PE | 648 | CG8772-PE | 44..648 | 133..737 | 3192 | 100 | Plus |
GLS-PA | 706 | CG8772-PA | 102..706 | 133..737 | 3192 | 100 | Plus |
GLS-PI | 701 | CG8772-PI | 44..701 | 133..737 | 3128 | 91.9 | Plus |
GLS-PJ | 712 | CG42708-PJ | 39..633 | 133..731 | 2947 | 94.3 | Plus |
GLS-PH | 775 | CG8772-PH | 102..696 | 133..731 | 2947 | 94.3 | Plus |
GLS-PJ | 712 | CG42708-PJ | 655..712 | 680..737 | 290 | 98.3 | Plus |
GLS-PH | 775 | CG8772-PH | 718..775 | 680..737 | 290 | 98.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19918-PA | 727 | GI19918-PA | 120..727 | 123..737 | 2948 | 88.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17734-PA | 719 | GL17734-PA | 114..719 | 123..737 | 3071 | 91.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21309-PF | 755 | GA21309-PF | 3..755 | 1..737 | 3539 | 86.3 | Plus |
Dpse\GA21309-PA | 719 | GA21309-PA | 114..719 | 123..737 | 3068 | 91.1 | Plus |
Dpse\GA21309-PD | 632 | GA21309-PD | 27..632 | 123..737 | 3059 | 91.1 | Plus |
Dpse\GA21309-PB | 746 | GA21309-PB | 114..746 | 123..737 | 3033 | 87.2 | Plus |
Dpse\GA21309-PC | 622 | GA21309-PC | 16..622 | 122..737 | 3010 | 89.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20343-PA | 716 | GM20343-PA | 102..716 | 123..737 | 3349 | 99.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25822-PA | 716 | GD25822-PA | 102..716 | 123..737 | 3361 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15085-PA | 706 | GJ15085-PA | 102..706 | 123..737 | 2957 | 89.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21608-PA | 701 | GK21608-PA | 103..701 | 123..737 | 3034 | 90.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE13430-PA | 716 | GE13430-PA | 102..716 | 123..737 | 3326 | 98.7 | Plus |
Translation from 63 to 2276
> RH48456.hyp MGDRSWNLLQYATEKAPIPLDGYTAEEAAEFKDSIRQKIVDDLKSMTGEE LIELVKQNAAKVEEEKVEIPPTEPLSGTEEGKERVQDDADLIDAGIIAEM VAGLCTKSQKETFIKVITKYISSQRRHYSMRPHREQEQRNAEDVLFDMFA SEETGLISMGKFLAGLKTTGIRRNDPRVRELMDNLKKVHKLNNYETGSSA ETQHLNRETFKAVVAPNIVLIAKAFRQQFVIPDFTSFVKDIEDIYNRCKT NTLGKLADYIPQLARYNPDSWGLSICTIDGQRFSIGDVDVPFTLQSCSKP LTYAIALEKLGPKVVHSYVGQEPSGRNFNELVLDQNKKPHNPMINAGAIL TCSLMNALVKPDMTSAEIFDYTMSWFKRLSGGEYIGFNNAVFLSEREAAD RNYALGFYMRENKCFPKRTNLKEVMDFYFQCCSMETNCEAMSVIAASLAN GGICPTTEEKVFRPEVIRDVLSIMHSCGTYDYSGQFAFKVGLPAKSGVSG GMMLVIPNVMGIFAWSPPLDHLGNTVRGLQFCEELVSMFNFHRYDNLKHL SNKKDPRKHRYETKGLSIVNLLFSAASGDVTALRRHRLSGMDITLADYDG RTALHLAASEGHLECVKFLLEQCHVPHNPKDRWGNLPVDEAENFGHCHVV EFLRSWAEKADQSSEECKPEAVTSKTQADEEICSTSDLETSPTTSPIPTP VESGSRAGSGRSSPVPSDAGSTASAGSSIDDKTKPGL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG42708-PB | 737 | CG8772-PB | 1..737 | 1..737 | 3859 | 100 | Plus |
CG42708-PK | 727 | CG42708-PK | 1..727 | 1..737 | 3783 | 98.6 | Plus |
CG42708-PC | 658 | CG8772-PC | 44..658 | 123..737 | 3247 | 100 | Plus |
CG42708-PD | 716 | CG8772-PD | 102..716 | 123..737 | 3247 | 100 | Plus |
CG42708-PF | 671 | CG8772-PF | 23..671 | 79..737 | 3226 | 93.6 | Plus |