Clone RH48586 Report

Search the DGRC for RH48586

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:485
Well:86
Vector:pFlc-1
Associated Gene/TranscriptTango14-RA
Protein status:RH48586.pep: gold
Preliminary Size:992
Sequenced Size:1271

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4775 2002-01-01 Sim4 clustering to Release 2
CG4775 2002-02-27 Blastp of sequenced clone
CG4775 2003-01-01 Sim4 clustering to Release 3
Tango14 2008-04-29 Release 5.5 accounting
Tango14 2008-08-15 Release 5.9 accounting
Tango14 2008-12-18 5.12 accounting

Clone Sequence Records

RH48586.complete Sequence

1271 bp (1271 high quality bases) assembled on 2002-02-27

GenBank Submission: AY089679

> RH48586.complete
GACACTGACGAACACGTATTTTCATTATTCTTGCGAAGCGCATCGCTTAA
AACTTGATTACGCTCGGATAACAAGATGCACCCGCGTCTCAAGTGACTGA
ACAGGTAGCGAAGTGACCCTGGATGAGCGTGGGTAGGCAGCCGGCACCTC
TGGAAAGCCCTAATCCCAGGTCCGCCAGCCGTTTGCAGGTTATGTCCGCT
TGTGTACACTGTGACGGGGAACCGAAGAAGCAACAGGAGCGGATTCCTGG
CAGAAGAGACAACCGCTGTACGAGATACCGCCCCTGACCTGCGCAACATG
ATCGAGGTGCTGTGCCTGCTGCTGGGCAGGATCCTGCTGCTCCTGGTCGG
CGGCTACGAACTGATGTGGCGGCTCCGAGAGCGACTGAATGCACTGGCCG
TCCGGTCATATGACCTTTGGCGCAGCAAAGCGGCACGTGAGGCGCACGAG
CGGCGCGTGCTCGCTGACTGCCGCTCCCAGTTGACGAAGACGCCGCAGCA
TCTGGTCCTGGTTATCTCCCCCGTAGATGCCGGCGTGGATGCGGTGCTCC
TCAGCAGGATCTTCGACTTTGCCCTGGACGTGGGCATCAAACACGTCAGC
CTGTACGACAGGCGGACGAAAGGCAGGGGATACGTGGACATGGCCGATCT
CTGTCGATCCACCAACGCGGACACGGGCAGCTGCTTAAAGTGGCCACCCG
TAGCCAGTCCCAGCAAACTGGAGAACCAGCCCAAAAACGGACAAAAGACA
AATGGTTATGTGAACGGTTCACATTCCCCTCAACTGCAGCTCCATCAAAT
CAGCGCCTCCGACGGCCATGCCCTGATCGCCGACGTCTGCCGCGAGTTGT
ACGAAGACAGTAAGACGGAGTTGGTGCAGAGCCTACTTAAGCAGAAGCGC
GAAGCGCTGACGGAGCAGATCAGCGACATGCTGAGCAAGCGACTCGGGTT
CGAGGCCCCGGAGCCGGAGCTGGGCATCGTGTTCGCCCGGCAGACGTGCA
CCTACGGCCTGCTTCCCTGGCACGCGCGCTTCACCGAGTTCCACACGCAT
CCCAGCGGACGCCACTTCGACGTGGAGACGTTCGCCAGCATCCTGTGCAA
GTACTCGCGGTGCGAGCAGCGGTGGGGCACGTAGGCACATCGTTCGCGTG
GGTAGCGACACCCTTATATTAACTAGTTACCTTAACATTATGTAAATTAT
CGCCAGGAATTCCTTTTAGTTCGTAAGAGTAAACTGCAAAAGTGTATTGT
TCACACAAAAAAAAAAAAAAA

RH48586.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:22:47
Subject Length Description Subject Range Query Range Score Percent Strand
Tango14-RA 1372 Tango14-RA 57..1310 2..1255 6270 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:12:05
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 1158600..1159387 2..789 3820 99 Plus
chr2L 23010047 chr2L 1159679..1160147 787..1255 2315 99.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:31:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:12:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1158680..1159467 2..789 3940 100 Plus
2L 23513712 2L 1159753..1160221 787..1255 2345 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:52:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1158680..1159467 2..789 3940 100 Plus
2L 23513712 2L 1159753..1160221 787..1255 2345 100 Plus
Blast to na_te.dros performed on 2019-03-16 00:12:03 has no hits.

RH48586.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:13:11 Download gff for RH48586.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 1158599..1159387 1..789 98 -> Plus
chr2L 1159682..1160147 790..1256 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:48:26 Download gff for RH48586.complete
Subject Subject Range Query Range Percent Splice Strand
Tango14-RA 1..837 298..1134 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:32:10 Download gff for RH48586.complete
Subject Subject Range Query Range Percent Splice Strand
Tango14-RA 1..837 298..1134 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:51:09 Download gff for RH48586.complete
Subject Subject Range Query Range Percent Splice Strand
Tango14-RA 1..837 298..1134 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:05:10 Download gff for RH48586.complete
Subject Subject Range Query Range Percent Splice Strand
Tango14-RA 1..837 298..1134 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:00:58 Download gff for RH48586.complete
Subject Subject Range Query Range Percent Splice Strand
Tango14-RA 1..837 298..1134 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:58:07 Download gff for RH48586.complete
Subject Subject Range Query Range Percent Splice Strand
Tango14-RA 2..1255 2..1255 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:32:10 Download gff for RH48586.complete
Subject Subject Range Query Range Percent Splice Strand
Tango14-RA 2..1255 2..1255 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:51:09 Download gff for RH48586.complete
Subject Subject Range Query Range Percent Splice Strand
Tango14-RA 19..1272 1..1254 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 17:07:11 Download gff for RH48586.complete
Subject Subject Range Query Range Percent Splice Strand
Tango14-RA 2..1255 2..1255 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:00:58 Download gff for RH48586.complete
Subject Subject Range Query Range Percent Splice Strand
Tango14-RA 19..1272 1..1254 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:13:11 Download gff for RH48586.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1158679..1159467 1..789 99 -> Plus
2L 1159756..1160221 790..1256 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:13:11 Download gff for RH48586.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1158679..1159467 1..789 99 -> Plus
2L 1159756..1160221 790..1256 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:13:11 Download gff for RH48586.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1158679..1159467 1..789 99 -> Plus
2L 1159756..1160221 790..1256 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:51:09 Download gff for RH48586.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1158679..1159467 1..789 99 -> Plus
arm_2L 1159756..1160221 790..1256 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:38:56 Download gff for RH48586.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1158679..1159467 1..789 99 -> Plus
2L 1159756..1160221 790..1256 99   Plus

RH48586.pep Sequence

Translation from 297 to 1133

> RH48586.pep
MIEVLCLLLGRILLLLVGGYELMWRLRERLNALAVRSYDLWRSKAAREAH
ERRVLADCRSQLTKTPQHLVLVISPVDAGVDAVLLSRIFDFALDVGIKHV
SLYDRRTKGRGYVDMADLCRSTNADTGSCLKWPPVASPSKLENQPKNGQK
TNGYVNGSHSPQLQLHQISASDGHALIADVCRELYEDSKTELVQSLLKQK
REALTEQISDMLSKRLGFEAPEPELGIVFARQTCTYGLLPWHARFTEFHT
HPSGRHFDVETFASILCKYSRCEQRWGT*

RH48586.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:40:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15168-PA 282 GF15168-PA 31..282 31..278 973 72.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:40:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24771-PA 278 GG24771-PA 1..278 1..278 1319 93.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:40:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13897-PA 286 GH13897-PA 1..285 1..277 772 52.9 Plus
Dgri\GH10056-PA 286 GH10056-PA 1..285 1..277 766 52.6 Plus
Dgri\GH10552-PA 257 GH10552-PA 1..256 30..277 682 53.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:30:31
Subject Length Description Subject Range Query Range Score Percent Strand
Tango14-PB 278 CG4775-PB 1..278 1..278 1459 100 Plus
Tango14-PA 278 CG4775-PA 1..278 1..278 1459 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:40:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21419-PA 277 GI21419-PA 2..276 1..277 741 51.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:40:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15601-PA 523 GL15601-PA 243..522 1..277 826 60.1 Plus
Dper\GL15601-PA 523 GL15601-PA 1..228 1..225 571 55.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:40:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18423-PB 281 GA18423-PB 1..280 1..277 822 60.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:40:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16799-PA 278 GM16799-PA 1..278 1..278 1440 96.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:40:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23075-PA 278 GD23075-PA 1..278 1..278 1432 96.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:40:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11212-PA 277 GJ11212-PA 2..276 1..277 753 53.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:40:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18421-PA 276 GK18421-PA 1..275 1..277 916 65.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:40:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17374-PA 278 GE17374-PA 1..278 1..278 1307 93.9 Plus

RH48586.hyp Sequence

Translation from 297 to 1133

> RH48586.hyp
MIEVLCLLLGRILLLLVGGYELMWRLRERLNALAVRSYDLWRSKAAREAH
ERRVLADCRSQLTKTPQHLVLVISPVDAGVDAVLLSRIFDFALDVGIKHV
SLYDRRTKGRGYVDMADLCRSTNADTGSCLKWPPVASPSKLENQPKNGQK
TNGYVNGSHSPQLQLHQISASDGHALIADVCRELYEDSKTELVQSLLKQK
REALTEQISDMLSKRLGFEAPEPELGIVFARQTCTYGLLPWHARFTEFHT
HPSGRHFDVETFASILCKYSRCEQRWGT*

RH48586.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:04
Subject Length Description Subject Range Query Range Score Percent Strand
Tango14-PB 278 CG4775-PB 1..278 1..278 1459 100 Plus
Tango14-PA 278 CG4775-PA 1..278 1..278 1459 100 Plus