BDGP Sequence Production Resources |
Search the DGRC for RH48856
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 488 |
Well: | 56 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Amy-d-RA |
Protein status: | RH48856.pep: gold |
Preliminary Size: | 1482 |
Sequenced Size: | 1618 |
Gene | Date | Evidence |
---|---|---|
CG17876 | 2002-01-01 | Sim4 clustering to Release 2 |
CG17876 | 2004-07-15 | Blastp of sequenced clone |
Amy-d | 2008-04-29 | Release 5.5 accounting |
Amy-d | 2008-08-15 | Release 5.9 accounting |
Amy-d | 2008-12-18 | 5.12 accounting |
1618 bp (1618 high quality bases) assembled on 2004-07-15
GenBank Submission: BT021225
> RH48856.complete GAGAGTGAAATTTAGCTTCCACCTAAAATCATCATGTTTCTGGCCAAGAG CATAGTGTGCCTCTCCCTCCTGGCGGTGGCCAATGCCCAATTCGACACCA ACTACGCATCCGGTCGTAGTGGAATGGTCCACCTCTTCGAGTGGAAGTGG GACGACATCGCTGCCGAGTGCGAGAACTTCCTGGGACCCAATGGCTACGC CGGTGTTCAGGTCTCCCCTGTGAACGAGAACGCCGTCAAGGACAGCCGCC CCTGGTGGGAACGTTACCAACCCATCTCCTACAAGCTGGAGACCCGCTCC GGAAACGAGGAGCAGTTCGCCAGCATGGTCAAGCGCTGCAACGCCGTCGG AGTGCGCACCTACGTGGACGTGGTCTTCAACCACATGGCCGCCGACGGAG GCACCTACGGCACTGGCGGCAGCACCGCCAGCCCCAGCAGCAAGAGCTAT CCCGGAGTGCCCTACTCCTCGCTGGACTTCAACCCGACCTGCGCCATCAG CAACTACAACGACGCCAACGAGGTGCGCAACTGCGAGCTGGTCGGTCTGC GCGACCTTAACCAGGGCAACTCCTACGTGCAGGACAAGGTGGTCGAGTTC CTGGACCATCTGATTGATCTCGGCGTGGCCGGATTCCGCGTGGACGCCGC CAAGCACATGTGGCCCGCCGACCTGGCCGTCATCTATGGCCGCCTCAAGA ACCTGAACACCGACCACGGCTTCGCCTCGGGATCCAAGGCGTACATCGTC CAGGAGGTCATCGACATGGGCGGCGAGGCCATCAGCAAGTCCGAGTACAC CGGACTGGGCGCCATCACCGAGTTCCGCCACTCCGACTCCATCGGCAAGG TCTTCCGCGGCAAGGACCAGCTGCAGTATCTGACCAACTGGGGCACCGCC TGGGGCTTCGCCGCCTCCGACCGCTCCCTGGTATTCGTCGACAACCACGA CAACCAGCGCGGACATGGAGCAGGAGGCGCCGACGTGCTGACCTACAAGG TGCCCAAGCAGTACAAGATGGCCTCCGCCTTCATGCTGGCGCACCCATTC GGCACTCCCCGCGTGATGTCCTCCTTCTCCTTCACGGACACCGATCAGGG CCCGCCCACCACCGACGGCCACAACATCGCCTCGCCCATCTTCAATAGCG ACAACTCCTGCAGCGGCGGCTGGGTGTGCGAGCACCGCTGGCGCCAGATC TACAACATGGTGGCCTTCCGGAACGCCGTGGGATTGGACGAGATCCAGAA CTGGTGGGACAGCGGCAGCAATCAGATCTCCTTCAGCCGAGGTAGCCGCG GCTTCGTGGCCTTCAACAACGACAACTACGACCTGAACAGCTCCCTGCAG ACGGGCCTGCCCGCCGGCACCTACTGCGACGTCATTTCCGGCTCCAAGAG CGGCTCCTCCTGCACGGGCAAGACGGTCACCGTCGGATCCGACGGACGGG CTTCCATCTACATTGGCAGCTCCGAGGACGACGGAGTGCTGGCCATTCAC GTCAACGCCAAGTTGTAAACAACTGGGGCAAAGACCAAGGCCGAAAAGCC GAGCAATTACTTGAGATTATTCATTTTTAAAATATATATTATGCGATTAT AACAAAAAAAAAAAAAAA
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 13011966..13013570 | 1..1603 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Amy-d-RA | 1..1485 | 34..1518 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Amy-d-RA | 1..1485 | 34..1518 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Amy-d-RA | 1..1485 | 34..1518 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Amy-d-RA | 1..1485 | 34..1518 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Amy-d-RA | 1..1485 | 34..1518 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Amy-d-RA | 6..1608 | 1..1603 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Amy-d-RA | 6..1608 | 1..1603 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Amy-d-RA | 6..1608 | 1..1603 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Amy-d-RA | 6..1608 | 1..1603 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Amy-d-RA | 4..1606 | 1..1603 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 17124767..17126369 | 1..1603 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 17124767..17126369 | 1..1603 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 17124767..17126369 | 1..1603 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 13012272..13013874 | 1..1603 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 17125966..17127568 | 1..1603 | 99 | Plus |
Translation from 33 to 1517
> RH48856.hyp MFLAKSIVCLSLLAVANAQFDTNYASGRSGMVHLFEWKWDDIAAECENFL GPNGYAGVQVSPVNENAVKDSRPWWERYQPISYKLETRSGNEEQFASMVK RCNAVGVRTYVDVVFNHMAADGGTYGTGGSTASPSSKSYPGVPYSSLDFN PTCAISNYNDANEVRNCELVGLRDLNQGNSYVQDKVVEFLDHLIDLGVAG FRVDAAKHMWPADLAVIYGRLKNLNTDHGFASGSKAYIVQEVIDMGGEAI SKSEYTGLGAITEFRHSDSIGKVFRGKDQLQYLTNWGTAWGFAASDRSLV FVDNHDNQRGHGAGGADVLTYKVPKQYKMASAFMLAHPFGTPRVMSSFSF TDTDQGPPTTDGHNIASPIFNSDNSCSGGWVCEHRWRQIYNMVAFRNAVG LDEIQNWWDSGSNQISFSRGSRGFVAFNNDNYDLNSSLQTGLPAGTYCDV ISGSKSGSSCTGKTVTVGSDGRASIYIGSSEDDGVLAIHVNAKL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Amy-d-PA | 494 | CG17876-PA | 1..494 | 1..494 | 2641 | 100 | Plus |
Amy-p-PB | 494 | CG18730-PB | 1..494 | 1..494 | 2631 | 99.4 | Plus |
Amy-p-PA | 494 | CG18730-PA | 1..494 | 1..494 | 2631 | 99.4 | Plus |
Amyrel-PA | 493 | CG8221-PA | 19..493 | 18..494 | 1579 | 61.2 | Plus |
Translation from 33 to 1517
> RH48856.pep MFLAKSIVCLSLLAVANAQFDTNYASGRSGMVHLFEWKWDDIAAECENFL GPNGYAGVQVSPVNENAVKDSRPWWERYQPISYKLETRSGNEEQFASMVK RCNAVGVRTYVDVVFNHMAADGGTYGTGGSTASPSSKSYPGVPYSSLDFN PTCAISNYNDANEVRNCELVGLRDLNQGNSYVQDKVVEFLDHLIDLGVAG FRVDAAKHMWPADLAVIYGRLKNLNTDHGFASGSKAYIVQEVIDMGGEAI SKSEYTGLGAITEFRHSDSIGKVFRGKDQLQYLTNWGTAWGFAASDRSLV FVDNHDNQRGHGAGGADVLTYKVPKQYKMASAFMLAHPFGTPRVMSSFSF TDTDQGPPTTDGHNIASPIFNSDNSCSGGWVCEHRWRQIYNMVAFRNAVG LDEIQNWWDSGSNQISFSRGSRGFVAFNNDNYDLNSSLQTGLPAGTYCDV ISGSKSGSSCTGKTVTVGSDGRASIYIGSSEDDGVLAIHVNAKL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\Amy58-PA | 494 | GF18843-PA | 1..494 | 1..494 | 2440 | 93.3 | Plus |
Dana\Amy35-PA | 494 | GF18844-PA | 1..494 | 1..494 | 2436 | 93.1 | Plus |
Dana\Amy4N-PA | 495 | GF13835-PA | 4..495 | 3..494 | 2427 | 92.7 | Plus |
Dana\Amyc1-PA | 494 | GF12581-PA | 1..494 | 1..494 | 2159 | 78.9 | Plus |
Dana\Amy2E-PA | 449 | GF18842-PA | 1..449 | 1..494 | 2125 | 84 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\Amy-p-PA | 494 | GG22216-PA | 1..494 | 1..494 | 2497 | 95.3 | Plus |
Dere\Amy-d-PA | 494 | GG20663-PA | 1..494 | 1..494 | 2491 | 94.9 | Plus |
Dere\Amyrel-PA | 493 | GG22255-PA | 1..493 | 1..494 | 1573 | 59.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21468-PA | 538 | GH21468-PA | 45..538 | 1..494 | 2242 | 83.6 | Plus |
Dgri\Amyrel-PA | 490 | GH22708-PA | 1..490 | 2..494 | 1626 | 60.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Amy-d-PA | 494 | CG17876-PA | 1..494 | 1..494 | 2641 | 100 | Plus |
Amy-p-PB | 494 | CG18730-PB | 1..494 | 1..494 | 2631 | 99.4 | Plus |
Amy-p-PA | 494 | CG18730-PA | 1..494 | 1..494 | 2631 | 99.4 | Plus |
Amyrel-PA | 493 | CG8221-PA | 19..493 | 18..494 | 1579 | 61.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19946-PA | 494 | GI19946-PA | 1..494 | 1..494 | 2193 | 84 | Plus |
Dmoj\GI18495-PA | 490 | GI18495-PA | 1..490 | 2..494 | 1618 | 60 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\Amy4-PA | 494 | GL20050-PA | 1..494 | 1..494 | 2354 | 88.3 | Plus |
Dper\Amy2-PA | 494 | GL20058-PA | 1..494 | 1..494 | 2327 | 87.4 | Plus |
Dper\GL11824-PA | 448 | GL11824-PA | 10..448 | 8..494 | 1378 | 53.2 | Plus |
Dper\GL20056-PA | 309 | GL20056-PA | 1..254 | 1..254 | 1233 | 87 | Plus |
Dper\GL20056-PA | 309 | GL20056-PA | 230..309 | 417..494 | 205 | 67.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\Amy2-PA | 494 | GA24912-PA | 1..494 | 1..494 | 2359 | 88.7 | Plus |
Dpse\Amy1-PA | 494 | GA24265-PA | 1..494 | 1..494 | 2359 | 88.7 | Plus |
Dpse\Amyrel-PA | 494 | GA20907-PA | 10..494 | 8..494 | 1599 | 59.3 | Plus |
Dpse\Amy3-PA | 262 | GA24911-PA | 10..262 | 228..494 | 1103 | 82.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\Amy-p-PA | 485 | GM20004-PA | 1..485 | 1..494 | 2396 | 92.9 | Plus |
Dsec\Amy-d-PA | 474 | GM21759-PA | 1..474 | 1..494 | 2387 | 92.3 | Plus |
Dsec\Amyrel-PA | 493 | GM20043-PA | 4..493 | 2..494 | 1588 | 59.4 | Plus |
Dsec\GM23222-PA | 173 | GM23222-PA | 1..121 | 1..121 | 644 | 95 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\Amy-d-PA | 494 | GD11250-PA | 1..494 | 1..494 | 2604 | 97.2 | Plus |
Dsim\Amyrel-PA | 493 | GD25526-PA | 4..493 | 2..494 | 1590 | 59.6 | Plus |
Dsim\Amy-p-PA | 234 | GD25494-PA | 1..234 | 1..234 | 1242 | 97.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\Amy-PA | 494 | GJ17794-PA | 1..494 | 1..494 | 2261 | 86.4 | Plus |
Dvir\Amyrel-PA | 490 | GJ21358-PA | 1..490 | 2..494 | 1592 | 58.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21763-PA | 494 | GK21763-PA | 1..494 | 1..494 | 2309 | 87 | Plus |
Dwil\GK21544-PA | 494 | GK21544-PA | 1..494 | 1..494 | 2309 | 87 | Plus |
Dwil\Amyrel-PA | 460 | GK10730-PA | 1..459 | 1..461 | 1515 | 59.4 | Plus |
Dwil\GK21545-PA | 286 | GK21545-PA | 1..286 | 209..494 | 1316 | 88.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\Amy-d-PA | 494 | GE11648-PA | 1..494 | 1..494 | 2524 | 96.2 | Plus |
Dyak\Amy-p-PA | 528 | GE14213-PA | 1..528 | 1..494 | 2465 | 89.6 | Plus |
Dyak\Amyrel-PA | 493 | GE14048-PA | 15..493 | 14..494 | 1582 | 60 | Plus |