Clone RH48856 Report

Search the DGRC for RH48856

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:488
Well:56
Vector:pFlc-1
Associated Gene/TranscriptAmy-d-RA
Protein status:RH48856.pep: gold
Preliminary Size:1482
Sequenced Size:1618

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17876 2002-01-01 Sim4 clustering to Release 2
CG17876 2004-07-15 Blastp of sequenced clone
Amy-d 2008-04-29 Release 5.5 accounting
Amy-d 2008-08-15 Release 5.9 accounting
Amy-d 2008-12-18 5.12 accounting

Clone Sequence Records

RH48856.complete Sequence

1618 bp (1618 high quality bases) assembled on 2004-07-15

GenBank Submission: BT021225

> RH48856.complete
GAGAGTGAAATTTAGCTTCCACCTAAAATCATCATGTTTCTGGCCAAGAG
CATAGTGTGCCTCTCCCTCCTGGCGGTGGCCAATGCCCAATTCGACACCA
ACTACGCATCCGGTCGTAGTGGAATGGTCCACCTCTTCGAGTGGAAGTGG
GACGACATCGCTGCCGAGTGCGAGAACTTCCTGGGACCCAATGGCTACGC
CGGTGTTCAGGTCTCCCCTGTGAACGAGAACGCCGTCAAGGACAGCCGCC
CCTGGTGGGAACGTTACCAACCCATCTCCTACAAGCTGGAGACCCGCTCC
GGAAACGAGGAGCAGTTCGCCAGCATGGTCAAGCGCTGCAACGCCGTCGG
AGTGCGCACCTACGTGGACGTGGTCTTCAACCACATGGCCGCCGACGGAG
GCACCTACGGCACTGGCGGCAGCACCGCCAGCCCCAGCAGCAAGAGCTAT
CCCGGAGTGCCCTACTCCTCGCTGGACTTCAACCCGACCTGCGCCATCAG
CAACTACAACGACGCCAACGAGGTGCGCAACTGCGAGCTGGTCGGTCTGC
GCGACCTTAACCAGGGCAACTCCTACGTGCAGGACAAGGTGGTCGAGTTC
CTGGACCATCTGATTGATCTCGGCGTGGCCGGATTCCGCGTGGACGCCGC
CAAGCACATGTGGCCCGCCGACCTGGCCGTCATCTATGGCCGCCTCAAGA
ACCTGAACACCGACCACGGCTTCGCCTCGGGATCCAAGGCGTACATCGTC
CAGGAGGTCATCGACATGGGCGGCGAGGCCATCAGCAAGTCCGAGTACAC
CGGACTGGGCGCCATCACCGAGTTCCGCCACTCCGACTCCATCGGCAAGG
TCTTCCGCGGCAAGGACCAGCTGCAGTATCTGACCAACTGGGGCACCGCC
TGGGGCTTCGCCGCCTCCGACCGCTCCCTGGTATTCGTCGACAACCACGA
CAACCAGCGCGGACATGGAGCAGGAGGCGCCGACGTGCTGACCTACAAGG
TGCCCAAGCAGTACAAGATGGCCTCCGCCTTCATGCTGGCGCACCCATTC
GGCACTCCCCGCGTGATGTCCTCCTTCTCCTTCACGGACACCGATCAGGG
CCCGCCCACCACCGACGGCCACAACATCGCCTCGCCCATCTTCAATAGCG
ACAACTCCTGCAGCGGCGGCTGGGTGTGCGAGCACCGCTGGCGCCAGATC
TACAACATGGTGGCCTTCCGGAACGCCGTGGGATTGGACGAGATCCAGAA
CTGGTGGGACAGCGGCAGCAATCAGATCTCCTTCAGCCGAGGTAGCCGCG
GCTTCGTGGCCTTCAACAACGACAACTACGACCTGAACAGCTCCCTGCAG
ACGGGCCTGCCCGCCGGCACCTACTGCGACGTCATTTCCGGCTCCAAGAG
CGGCTCCTCCTGCACGGGCAAGACGGTCACCGTCGGATCCGACGGACGGG
CTTCCATCTACATTGGCAGCTCCGAGGACGACGGAGTGCTGGCCATTCAC
GTCAACGCCAAGTTGTAAACAACTGGGGCAAAGACCAAGGCCGAAAAGCC
GAGCAATTACTTGAGATTATTCATTTTTAAAATATATATTATGCGATTAT
AACAAAAAAAAAAAAAAA

RH48856.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:59:37
Subject Length Description Subject Range Query Range Score Percent Strand
Amy-d-RA 1621 Amy-d-RA 7..1617 2..1612 7995 99.7 Plus
Amy-p-RA 1598 Amy-p-RA 2..1528 2..1528 7230 98.2 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:34:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 13011967..13013570 2..1603 7760 99.1 Plus
chr2R 21145070 chr2R 13005968..13007494 1528..2 7200 98.1 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:31:44 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:34:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17124768..17126378 2..1612 7995 99.8 Plus
2R 25286936 2R 17118776..17120302 1528..2 7230 98.2 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:48:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 17125967..17127577 2..1612 7995 99.7 Plus
2R 25260384 2R 17119975..17121501 1528..2 7230 98.2 Minus
Blast to na_te.dros performed on 2019-03-15 20:34:48 has no hits.

RH48856.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:35:57 Download gff for RH48856.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 13011966..13013570 1..1603 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:48:32 Download gff for RH48856.complete
Subject Subject Range Query Range Percent Splice Strand
Amy-d-RA 1..1485 34..1518 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:34:01 Download gff for RH48856.complete
Subject Subject Range Query Range Percent Splice Strand
Amy-d-RA 1..1485 34..1518 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:09:06 Download gff for RH48856.complete
Subject Subject Range Query Range Percent Splice Strand
Amy-d-RA 1..1485 34..1518 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:17:55 Download gff for RH48856.complete
Subject Subject Range Query Range Percent Splice Strand
Amy-d-RA 1..1485 34..1518 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:39:13 Download gff for RH48856.complete
Subject Subject Range Query Range Percent Splice Strand
Amy-d-RA 1..1485 34..1518 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:40:07 Download gff for RH48856.complete
Subject Subject Range Query Range Percent Splice Strand
Amy-d-RA 6..1608 1..1603 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:34:01 Download gff for RH48856.complete
Subject Subject Range Query Range Percent Splice Strand
Amy-d-RA 6..1608 1..1603 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:09:06 Download gff for RH48856.complete
Subject Subject Range Query Range Percent Splice Strand
Amy-d-RA 6..1608 1..1603 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:17:56 Download gff for RH48856.complete
Subject Subject Range Query Range Percent Splice Strand
Amy-d-RA 6..1608 1..1603 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:39:13 Download gff for RH48856.complete
Subject Subject Range Query Range Percent Splice Strand
Amy-d-RA 4..1606 1..1603 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:35:57 Download gff for RH48856.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17124767..17126369 1..1603 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:35:57 Download gff for RH48856.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17124767..17126369 1..1603 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:35:57 Download gff for RH48856.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17124767..17126369 1..1603 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:09:06 Download gff for RH48856.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13012272..13013874 1..1603 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:55:00 Download gff for RH48856.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17125966..17127568 1..1603 99   Plus

RH48856.hyp Sequence

Translation from 33 to 1517

> RH48856.hyp
MFLAKSIVCLSLLAVANAQFDTNYASGRSGMVHLFEWKWDDIAAECENFL
GPNGYAGVQVSPVNENAVKDSRPWWERYQPISYKLETRSGNEEQFASMVK
RCNAVGVRTYVDVVFNHMAADGGTYGTGGSTASPSSKSYPGVPYSSLDFN
PTCAISNYNDANEVRNCELVGLRDLNQGNSYVQDKVVEFLDHLIDLGVAG
FRVDAAKHMWPADLAVIYGRLKNLNTDHGFASGSKAYIVQEVIDMGGEAI
SKSEYTGLGAITEFRHSDSIGKVFRGKDQLQYLTNWGTAWGFAASDRSLV
FVDNHDNQRGHGAGGADVLTYKVPKQYKMASAFMLAHPFGTPRVMSSFSF
TDTDQGPPTTDGHNIASPIFNSDNSCSGGWVCEHRWRQIYNMVAFRNAVG
LDEIQNWWDSGSNQISFSRGSRGFVAFNNDNYDLNSSLQTGLPAGTYCDV
ISGSKSGSSCTGKTVTVGSDGRASIYIGSSEDDGVLAIHVNAKL*

RH48856.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:11:33
Subject Length Description Subject Range Query Range Score Percent Strand
Amy-d-PA 494 CG17876-PA 1..494 1..494 2641 100 Plus
Amy-p-PB 494 CG18730-PB 1..494 1..494 2631 99.4 Plus
Amy-p-PA 494 CG18730-PA 1..494 1..494 2631 99.4 Plus
Amyrel-PA 493 CG8221-PA 19..493 18..494 1579 61.2 Plus

RH48856.pep Sequence

Translation from 33 to 1517

> RH48856.pep
MFLAKSIVCLSLLAVANAQFDTNYASGRSGMVHLFEWKWDDIAAECENFL
GPNGYAGVQVSPVNENAVKDSRPWWERYQPISYKLETRSGNEEQFASMVK
RCNAVGVRTYVDVVFNHMAADGGTYGTGGSTASPSSKSYPGVPYSSLDFN
PTCAISNYNDANEVRNCELVGLRDLNQGNSYVQDKVVEFLDHLIDLGVAG
FRVDAAKHMWPADLAVIYGRLKNLNTDHGFASGSKAYIVQEVIDMGGEAI
SKSEYTGLGAITEFRHSDSIGKVFRGKDQLQYLTNWGTAWGFAASDRSLV
FVDNHDNQRGHGAGGADVLTYKVPKQYKMASAFMLAHPFGTPRVMSSFSF
TDTDQGPPTTDGHNIASPIFNSDNSCSGGWVCEHRWRQIYNMVAFRNAVG
LDEIQNWWDSGSNQISFSRGSRGFVAFNNDNYDLNSSLQTGLPAGTYCDV
ISGSKSGSSCTGKTVTVGSDGRASIYIGSSEDDGVLAIHVNAKL*

RH48856.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:35:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\Amy58-PA 494 GF18843-PA 1..494 1..494 2440 93.3 Plus
Dana\Amy35-PA 494 GF18844-PA 1..494 1..494 2436 93.1 Plus
Dana\Amy4N-PA 495 GF13835-PA 4..495 3..494 2427 92.7 Plus
Dana\Amyc1-PA 494 GF12581-PA 1..494 1..494 2159 78.9 Plus
Dana\Amy2E-PA 449 GF18842-PA 1..449 1..494 2125 84 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:35:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\Amy-p-PA 494 GG22216-PA 1..494 1..494 2497 95.3 Plus
Dere\Amy-d-PA 494 GG20663-PA 1..494 1..494 2491 94.9 Plus
Dere\Amyrel-PA 493 GG22255-PA 1..493 1..494 1573 59.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:35:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21468-PA 538 GH21468-PA 45..538 1..494 2242 83.6 Plus
Dgri\Amyrel-PA 490 GH22708-PA 1..490 2..494 1626 60.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:47:48
Subject Length Description Subject Range Query Range Score Percent Strand
Amy-d-PA 494 CG17876-PA 1..494 1..494 2641 100 Plus
Amy-p-PB 494 CG18730-PB 1..494 1..494 2631 99.4 Plus
Amy-p-PA 494 CG18730-PA 1..494 1..494 2631 99.4 Plus
Amyrel-PA 493 CG8221-PA 19..493 18..494 1579 61.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:35:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19946-PA 494 GI19946-PA 1..494 1..494 2193 84 Plus
Dmoj\GI18495-PA 490 GI18495-PA 1..490 2..494 1618 60 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:35:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\Amy4-PA 494 GL20050-PA 1..494 1..494 2354 88.3 Plus
Dper\Amy2-PA 494 GL20058-PA 1..494 1..494 2327 87.4 Plus
Dper\GL11824-PA 448 GL11824-PA 10..448 8..494 1378 53.2 Plus
Dper\GL20056-PA 309 GL20056-PA 1..254 1..254 1233 87 Plus
Dper\GL20056-PA 309 GL20056-PA 230..309 417..494 205 67.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:35:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\Amy2-PA 494 GA24912-PA 1..494 1..494 2359 88.7 Plus
Dpse\Amy1-PA 494 GA24265-PA 1..494 1..494 2359 88.7 Plus
Dpse\Amyrel-PA 494 GA20907-PA 10..494 8..494 1599 59.3 Plus
Dpse\Amy3-PA 262 GA24911-PA 10..262 228..494 1103 82.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:35:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\Amy-p-PA 485 GM20004-PA 1..485 1..494 2396 92.9 Plus
Dsec\Amy-d-PA 474 GM21759-PA 1..474 1..494 2387 92.3 Plus
Dsec\Amyrel-PA 493 GM20043-PA 4..493 2..494 1588 59.4 Plus
Dsec\GM23222-PA 173 GM23222-PA 1..121 1..121 644 95 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:35:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\Amy-d-PA 494 GD11250-PA 1..494 1..494 2604 97.2 Plus
Dsim\Amyrel-PA 493 GD25526-PA 4..493 2..494 1590 59.6 Plus
Dsim\Amy-p-PA 234 GD25494-PA 1..234 1..234 1242 97.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:35:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Amy-PA 494 GJ17794-PA 1..494 1..494 2261 86.4 Plus
Dvir\Amyrel-PA 490 GJ21358-PA 1..490 2..494 1592 58.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:35:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21763-PA 494 GK21763-PA 1..494 1..494 2309 87 Plus
Dwil\GK21544-PA 494 GK21544-PA 1..494 1..494 2309 87 Plus
Dwil\Amyrel-PA 460 GK10730-PA 1..459 1..461 1515 59.4 Plus
Dwil\GK21545-PA 286 GK21545-PA 1..286 209..494 1316 88.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:35:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Amy-d-PA 494 GE11648-PA 1..494 1..494 2524 96.2 Plus
Dyak\Amy-p-PA 528 GE14213-PA 1..528 1..494 2465 89.6 Plus
Dyak\Amyrel-PA 493 GE14048-PA 15..493 14..494 1582 60 Plus