Clone RH48922 Report

Search the DGRC for RH48922

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:489
Well:22
Vector:pFlc-1
Associated Gene/TranscriptCG34155-RA
Protein status:RH48922.pep: gold
Sequenced Size:2634

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2239 2002-01-01 Sim4 clustering to Release 2
jdp 2008-04-29 Stopped prior to 5.5
CG34155-RA 2009-01-21 est gleaning

Clone Sequence Records

RH48922.complete Sequence

2634 bp assembled on 2009-08-06

GenBank Submission: BT099498.1

> RH48922.complete
GAGAGTCGCGTCAGCAACGTCGAACTGAAAACAACGCGACTTTTGGACGG
GAAAAGCGAATGCTAAGCGCAAACGACGAAATATCACGCATACGCCGCGT
TGGACCGAAAAGAATTGCAAGTGAAGTGAGATAAAAAGAAACTGAGGGAA
AAGAGTTTACGCCTTGGCTCGTTAGTGGATTTTTTGCCTTTTTGGGCAGT
TTACGAGCGGCTCAGCATAAATTGCTGGTACCACATAATCCACCTCCGCC
TCCGTTGCCCATTTCCCATTCGCACGAGCGTAATGAGGCAATGAGACGGT
GGGCAGCCGGAAAAGCAACAGCGGGAAACTCAGCCGAGGAGCCATGACAT
CTGGAGTCTGCCGGATTCTGGAGCTTTGGCCTCTGCCCGAGTGAAGAGCC
CCAACCCCCAGCGATGCTGCGCGATATCTTTCTGTATTTAGTTCTAATCG
TTTTATTTTGCTTCATTTTCATGGCGCAGTTAATCGTCAACGTTTACGCC
TTCCAGCGCCAGCCGTCGCCCAACAAAGCGGAGCGCAATGAAATTATATT
TGTCTAGAAAGGAGACAAGCTCCCCACCCACAGAGCCCCCAAAAGGCACA
GAGAAATAAATTATCAAACATAACTAAGCAAAATATATACTTAAAACATA
CTTGTCTGGAGACTGTATAAGCCATTAGCTCAATATTCGTTTTTACAACG
AAATAATGCATTCATAATAACTAGGAGTTAACTTGATTAATAGGCATTTA
AGTAAGCATTAACATCGTAAACGCATAGAGATCACATAATAAGCTCAAGA
TATCATATTTTCTTCCGGTGCAGCTTTGGGGGGGTGGGAAAAGAAGGCAG
GAAAATGAAGACGCTACAAAAGCAAAGGCTACAAGTCAAGTCGCGGTGGT
TTCCATTTAATAAGAAAAGGAACTCAACTACGTTCAACTCTCAGTTGAGT
GAGAAAAGTGGGAAAAAGCGCAGGGAATAGGCGGGGAAATCCAGGGGAAA
TGGGTGGAATAAAGGGGGTGAGGTGCGGAGGGATCAGGGGGGATCACCGC
GGGCGGAAGATAAACCCTCGAAGAACTGTTAAACTAGGTTGCGCGCTAAT
TAGTAACGGTAGTCTTGGGAGTGCACAATACGCGCCACACACCACTACAC
ACGACCGCCACTGAGACACATGGATACACAGAGAGAAAAGTCATTAAAGT
GGGTTTCAGACACAATGTGCCATTTAACACGAACTTTTAGTTTATCATAT
TGCAGCTTATTTGATTTTTATTTCGAAAATAACTAAGTGAAATCCAGATG
CTTAAAGAATTTTGTTTGCCTCTTTTGTACACCTTTGAAAATATTTCTTG
GCGCATTGTCGTATTACTGCGAGTTTTTCATTTACCCGAGCCACTGATAT
TGTCGTCCTTTTTTTTTTTTTGCTCTGCATAAAGAAAGTTTTCCACAGCG
GCAAGTCGCCACGGGAAAAGGCGAAGAAAAACCACTGAAAAATCCGTAGC
AGCAGGAGCTAAAGAATTCAGTATAGTTGCCACCGCTAGAGGAAGCGAAT
AAAGAGCAGAAATTAATTTCATAATTTTTTGCATTTTTCATTGAACACTT
TGCTGCCACCTCCGTTGTTTGTCTTTCATTATAGTCTTTTTTTTTTTGCG
ATTTTCCATCAGCTACAAAATTAATTCACATTCTGTTGTTAAAGTAATGC
ATTGAATGTGACACCGAGAAATTTTCATTTACCGTTTTCCATGCCCGCTT
TAAATGGGGCGTTTTAATTTTCCGACAATTGAAAAGTGTTGGGCTGACTT
TTTTTTTTCTATCGACTTCTAGCCGCACTCGAGGCGGCAGTGTTTCAGCC
TTTTTGGGTTTTTTCTTTTTGTTCAATGGCTGTTTTTCTTTCTATATTTC
TCTGCTGGCTTCTGTAGCTTTCATATTTTTCGGTTGTTTTTCCTTTTGGC
ACGCCGCAGCGCGTTTTATTGTTTTCTTTCGAGCCTGAGCACTTGAGTCC
TCGAGGGGCATATACACACTTGACCCCGTTTGAAAGCGGGCATTGAAACT
TCACAATGGGTCCGGAAAACGGGGGCGGGTGCCGAGAGGGGGCGTGGTCG
GGCATTTAACTCTTGCCGGGGCAGTTTAACTTGATTGCTGTCAGTGTGTC
CAAATGGAAATTAAAGTTTCATCAAATGCTCTGAGCTCTCTAAGCGGATG
TGGGCCAAGTTTGCCGAGAGTTTTTCGAGGGGTTTCGCTGAAAATTTAAA
TTGAAATTTAATCTGAACGCAGCACAGAGAAGTCAGACACACACATACAC
ACACACCAGCACACACCATTCATATCGAAGGAGAATCAAAATGTATTAAT
CGAAAATTATAGAGTTTTACATCTAAACGAAAATCCAATATAGAGGAACA
TTTTACGAGTACGGTTATATACTCCACTATACATACTTAGATATATGATA
TATACATTCGAACAATAATAGTCTTAGTTGTCGATCGATAAGTGCTCAGC
AGCCCAAAAAAACATATTAAGCCCCTTAATTGTATCGAACTTGTAGTTAG
ATCTGAACAATTAAAACGAAAGTCGAATAAATAAAATAATGCAGATAAAT
GTTCTTTGGTGAAAAGGAGAAAAAAAAAAAAAAA

RH48922.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:29:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG34155-RA 2620 CG34155-RA 1..2620 2..2620 13000 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:55:18
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 26377042..26379437 2619..224 11845 99.6 Minus
chr3R 27901430 chr3R 26382471..26382693 224..2 1100 99.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:31:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:55:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30554553..30556950 2620..224 11895 99.8 Minus
3R 32079331 3R 30559977..30560199 224..2 1100 99.6 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:24:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 30295384..30297781 2620..224 11905 99.8 Minus
3R 31820162 3R 30300808..30301030 224..2 1100 99.5 Minus
Blast to na_te.dros performed on 2019-03-16 07:55:16 has no hits.

RH48922.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:56:21 Download gff for RH48922.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 26377042..26379436 225..2619 99 <- Minus
chr3R 26382471..26382693 1..224 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:12:58 Download gff for RH48922.complete
Subject Subject Range Query Range Percent Splice Strand
CG34155-RA 1..144 414..557 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:56:45 Download gff for RH48922.complete
Subject Subject Range Query Range Percent Splice Strand
CG34155-RA 1..144 414..557 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:40:50 Download gff for RH48922.complete
Subject Subject Range Query Range Percent Splice Strand
CG34155-RA 1..144 414..557 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:44:50 Download gff for RH48922.complete
Subject Subject Range Query Range Percent Splice Strand
CG34155-RA 1..144 414..557 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-06 10:38:04 Download gff for RH48922.complete
Subject Subject Range Query Range Percent Splice Strand
CG34155-RA 1..2619 2..2619 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:56:45 Download gff for RH48922.complete
Subject Subject Range Query Range Percent Splice Strand
CG34155-RA 1..2619 2..2619 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:40:50 Download gff for RH48922.complete
Subject Subject Range Query Range Percent Splice Strand
CG34155-RA 1..2619 2..2619 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:44:50 Download gff for RH48922.complete
Subject Subject Range Query Range Percent Splice Strand
CG34155-RA 1..2619 2..2619 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:56:21 Download gff for RH48922.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30554554..30556949 225..2619 99 <- Minus
3R 30559977..30560199 1..224 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:56:21 Download gff for RH48922.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30554554..30556949 225..2619 99 <- Minus
3R 30559977..30560199 1..224 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:56:21 Download gff for RH48922.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30554554..30556949 225..2619 99 <- Minus
3R 30559977..30560199 1..224 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:40:50 Download gff for RH48922.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26380276..26382671 225..2619 99 <- Minus
arm_3R 26385699..26385921 1..224 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:48:17 Download gff for RH48922.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30295385..30297780 225..2619 99 <- Minus
3R 30300808..30301030 1..224 99   Minus

RH48922.pep Sequence

Translation from 413 to 556

> RH48922.pep
MLRDIFLYLVLIVLFCFIFMAQLIVNVYAFQRQPSPNKAERNEIIFV*

RH48922.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:04:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG34155-PA 47 CG34155-PA 1..47 1..47 236 100 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 18:08:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA30041-PA 48 GA30041-PA 1..48 1..47 204 87.5 Plus

RH48922.hyp Sequence

Translation from 1753 to 1916

> RH48922.hyp
MGRFNFPTIEKCWADFFFFYRFLAALEAAVFQPFWVFSFCSMAVFLSIFL
CWLL*
Sequence RH48922.hyp has no blast hits.