RH48922.complete Sequence
2634 bp assembled on 2009-08-06
GenBank Submission: BT099498.1
> RH48922.complete
GAGAGTCGCGTCAGCAACGTCGAACTGAAAACAACGCGACTTTTGGACGG
GAAAAGCGAATGCTAAGCGCAAACGACGAAATATCACGCATACGCCGCGT
TGGACCGAAAAGAATTGCAAGTGAAGTGAGATAAAAAGAAACTGAGGGAA
AAGAGTTTACGCCTTGGCTCGTTAGTGGATTTTTTGCCTTTTTGGGCAGT
TTACGAGCGGCTCAGCATAAATTGCTGGTACCACATAATCCACCTCCGCC
TCCGTTGCCCATTTCCCATTCGCACGAGCGTAATGAGGCAATGAGACGGT
GGGCAGCCGGAAAAGCAACAGCGGGAAACTCAGCCGAGGAGCCATGACAT
CTGGAGTCTGCCGGATTCTGGAGCTTTGGCCTCTGCCCGAGTGAAGAGCC
CCAACCCCCAGCGATGCTGCGCGATATCTTTCTGTATTTAGTTCTAATCG
TTTTATTTTGCTTCATTTTCATGGCGCAGTTAATCGTCAACGTTTACGCC
TTCCAGCGCCAGCCGTCGCCCAACAAAGCGGAGCGCAATGAAATTATATT
TGTCTAGAAAGGAGACAAGCTCCCCACCCACAGAGCCCCCAAAAGGCACA
GAGAAATAAATTATCAAACATAACTAAGCAAAATATATACTTAAAACATA
CTTGTCTGGAGACTGTATAAGCCATTAGCTCAATATTCGTTTTTACAACG
AAATAATGCATTCATAATAACTAGGAGTTAACTTGATTAATAGGCATTTA
AGTAAGCATTAACATCGTAAACGCATAGAGATCACATAATAAGCTCAAGA
TATCATATTTTCTTCCGGTGCAGCTTTGGGGGGGTGGGAAAAGAAGGCAG
GAAAATGAAGACGCTACAAAAGCAAAGGCTACAAGTCAAGTCGCGGTGGT
TTCCATTTAATAAGAAAAGGAACTCAACTACGTTCAACTCTCAGTTGAGT
GAGAAAAGTGGGAAAAAGCGCAGGGAATAGGCGGGGAAATCCAGGGGAAA
TGGGTGGAATAAAGGGGGTGAGGTGCGGAGGGATCAGGGGGGATCACCGC
GGGCGGAAGATAAACCCTCGAAGAACTGTTAAACTAGGTTGCGCGCTAAT
TAGTAACGGTAGTCTTGGGAGTGCACAATACGCGCCACACACCACTACAC
ACGACCGCCACTGAGACACATGGATACACAGAGAGAAAAGTCATTAAAGT
GGGTTTCAGACACAATGTGCCATTTAACACGAACTTTTAGTTTATCATAT
TGCAGCTTATTTGATTTTTATTTCGAAAATAACTAAGTGAAATCCAGATG
CTTAAAGAATTTTGTTTGCCTCTTTTGTACACCTTTGAAAATATTTCTTG
GCGCATTGTCGTATTACTGCGAGTTTTTCATTTACCCGAGCCACTGATAT
TGTCGTCCTTTTTTTTTTTTTGCTCTGCATAAAGAAAGTTTTCCACAGCG
GCAAGTCGCCACGGGAAAAGGCGAAGAAAAACCACTGAAAAATCCGTAGC
AGCAGGAGCTAAAGAATTCAGTATAGTTGCCACCGCTAGAGGAAGCGAAT
AAAGAGCAGAAATTAATTTCATAATTTTTTGCATTTTTCATTGAACACTT
TGCTGCCACCTCCGTTGTTTGTCTTTCATTATAGTCTTTTTTTTTTTGCG
ATTTTCCATCAGCTACAAAATTAATTCACATTCTGTTGTTAAAGTAATGC
ATTGAATGTGACACCGAGAAATTTTCATTTACCGTTTTCCATGCCCGCTT
TAAATGGGGCGTTTTAATTTTCCGACAATTGAAAAGTGTTGGGCTGACTT
TTTTTTTTCTATCGACTTCTAGCCGCACTCGAGGCGGCAGTGTTTCAGCC
TTTTTGGGTTTTTTCTTTTTGTTCAATGGCTGTTTTTCTTTCTATATTTC
TCTGCTGGCTTCTGTAGCTTTCATATTTTTCGGTTGTTTTTCCTTTTGGC
ACGCCGCAGCGCGTTTTATTGTTTTCTTTCGAGCCTGAGCACTTGAGTCC
TCGAGGGGCATATACACACTTGACCCCGTTTGAAAGCGGGCATTGAAACT
TCACAATGGGTCCGGAAAACGGGGGCGGGTGCCGAGAGGGGGCGTGGTCG
GGCATTTAACTCTTGCCGGGGCAGTTTAACTTGATTGCTGTCAGTGTGTC
CAAATGGAAATTAAAGTTTCATCAAATGCTCTGAGCTCTCTAAGCGGATG
TGGGCCAAGTTTGCCGAGAGTTTTTCGAGGGGTTTCGCTGAAAATTTAAA
TTGAAATTTAATCTGAACGCAGCACAGAGAAGTCAGACACACACATACAC
ACACACCAGCACACACCATTCATATCGAAGGAGAATCAAAATGTATTAAT
CGAAAATTATAGAGTTTTACATCTAAACGAAAATCCAATATAGAGGAACA
TTTTACGAGTACGGTTATATACTCCACTATACATACTTAGATATATGATA
TATACATTCGAACAATAATAGTCTTAGTTGTCGATCGATAAGTGCTCAGC
AGCCCAAAAAAACATATTAAGCCCCTTAATTGTATCGAACTTGTAGTTAG
ATCTGAACAATTAAAACGAAAGTCGAATAAATAAAATAATGCAGATAAAT
GTTCTTTGGTGAAAAGGAGAAAAAAAAAAAAAAA
RH48922.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 16:29:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34155-RA | 2620 | CG34155-RA | 1..2620 | 2..2620 | 13000 | 99.8 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:55:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 26377042..26379437 | 2619..224 | 11845 | 99.6 | Minus |
chr3R | 27901430 | chr3R | 26382471..26382693 | 224..2 | 1100 | 99.6 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:31:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:55:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30554553..30556950 | 2620..224 | 11895 | 99.8 | Minus |
3R | 32079331 | 3R | 30559977..30560199 | 224..2 | 1100 | 99.6 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:24:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 30295384..30297781 | 2620..224 | 11905 | 99.8 | Minus |
3R | 31820162 | 3R | 30300808..30301030 | 224..2 | 1100 | 99.5 | Minus |
Blast to na_te.dros performed on 2019-03-16 07:55:16 has no hits.
RH48922.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:56:21 Download gff for
RH48922.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 26377042..26379436 | 225..2619 | 99 | <- | Minus |
chr3R | 26382471..26382693 | 1..224 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:12:58 Download gff for
RH48922.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34155-RA | 1..144 | 414..557 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:56:45 Download gff for
RH48922.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34155-RA | 1..144 | 414..557 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:40:50 Download gff for
RH48922.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34155-RA | 1..144 | 414..557 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:44:50 Download gff for
RH48922.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34155-RA | 1..144 | 414..557 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-06 10:38:04 Download gff for
RH48922.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34155-RA | 1..2619 | 2..2619 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:56:45 Download gff for
RH48922.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34155-RA | 1..2619 | 2..2619 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:40:50 Download gff for
RH48922.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34155-RA | 1..2619 | 2..2619 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:44:50 Download gff for
RH48922.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34155-RA | 1..2619 | 2..2619 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:56:21 Download gff for
RH48922.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30554554..30556949 | 225..2619 | 99 | <- | Minus |
3R | 30559977..30560199 | 1..224 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:56:21 Download gff for
RH48922.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30554554..30556949 | 225..2619 | 99 | <- | Minus |
3R | 30559977..30560199 | 1..224 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:56:21 Download gff for
RH48922.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30554554..30556949 | 225..2619 | 99 | <- | Minus |
3R | 30559977..30560199 | 1..224 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:40:50 Download gff for
RH48922.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26380276..26382671 | 225..2619 | 99 | <- | Minus |
arm_3R | 26385699..26385921 | 1..224 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:48:17 Download gff for
RH48922.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30295385..30297780 | 225..2619 | 99 | <- | Minus |
3R | 30300808..30301030 | 1..224 | 99 | | Minus |
RH48922.pep Sequence
Translation from 413 to 556
> RH48922.pep
MLRDIFLYLVLIVLFCFIFMAQLIVNVYAFQRQPSPNKAERNEIIFV*
RH48922.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:04:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34155-PA | 47 | CG34155-PA | 1..47 | 1..47 | 236 | 100 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 18:08:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA30041-PA | 48 | GA30041-PA | 1..48 | 1..47 | 204 | 87.5 | Plus |
RH48922.hyp Sequence
Translation from 1753 to 1916
> RH48922.hyp
MGRFNFPTIEKCWADFFFFYRFLAALEAAVFQPFWVFSFCSMAVFLSIFL
CWLL*
Sequence RH48922.hyp has no blast hits.