BDGP Sequence Production Resources |
Search the DGRC for RH49003
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 490 |
Well: | 3 |
Vector: | pFlc-1 |
Associated Gene/Transcript | fabp-RB |
Protein status: | RH49003.pep: gold |
Sequenced Size: | 710 |
Gene | Date | Evidence |
---|---|---|
CG31305 | 2002-10-28 | Blastp of sequenced clone |
CG6783 | 2008-04-29 | Release 5.5 accounting |
CG6783 | 2008-08-15 | Release 5.9 accounting |
CG6782 | 2008-08-15 | Release 5.9 accounting |
CG6783 | 2008-12-18 | 5.12 accounting |
CG6782 | 2008-12-18 | 5.12 accounting |
710 bp (710 high quality bases) assembled on 2002-10-28
GenBank Submission: BT001835
> RH49003.complete CATTCGCTCAGAAAATTTCAACAGTGAACATCTTGTGCAGAACACAGACC AAATATTCCAAAAATGTCTTTCGTTGGCAAGAAGTACAAGCTGGACAAGT CCGAGAACTTCGATGAGTACATGAAGGAGCTGGGCGTCGGTCTGGTGACG CGCAAGATGGGCAACAGCCTGAGCCCCACAGTGGAGGTGACCTTGGAGGG CGATACCTACACCCTGACTACCACCTCCACCTTCAAGACCTCTGCCATCA GCTTCAAGCTGGGCGTTGAGTTCGACGAGGAGACCCTGGACGGTCGCAAC GTCAAGAGCATCATCACCCTGGATGGCAACAAGCTGACGCAGGAGCAGAA GGGCGACAAGCCCACCACCATCGTCCGCGAGTTCACCGACAACGAGCTGA TCACCACCCTCACCATCGGCAACGTTAAGTGCGTGCGCGTCTACAAGGCC GTCTAAGAGACTGATCTAAAACTATAATATCCATACGACTACATGCATTA AAACTAACTCAGGTAGCCAATATTCTTGTTGACTAACAGTGAACTAAACC AAATCAAATGGAACTGCACGCTCTGCCCAATGTTAATTTATAATCGCACC CGTACACCCGCAGTCGGTGTATGTGGGAATACTCCTCGTACTCGGGGACC AATTTCCGAATGCATTTGAATAAACTATTACTTGAAGTGCTTTTAAAAAA AAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG6783-RB | 714 | CG6783-RB | 1..697 | 2..698 | 3470 | 99.8 | Plus |
CG6783-RA | 1042 | CG6783-RA | 460..1025 | 133..698 | 2815 | 99.8 | Plus |
CG6783-RC | 1661 | CG6783-RC | 1..404 | 2..405 | 2020 | 100 | Plus |
CG6783-RA | 1042 | CG6783-RA | 1..132 | 2..133 | 660 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 7389572..7389860 | 694..406 | 1430 | 99.7 | Minus |
chr3R | 27901430 | chr3R | 7389929..7390201 | 405..133 | 1365 | 100 | Minus |
chr3R | 27901430 | chr3R | 7392406..7392539 | 134..1 | 670 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 11564079..11564371 | 698..406 | 1450 | 99.7 | Minus |
3R | 32079331 | 3R | 11564440..11564712 | 405..133 | 1365 | 100 | Minus |
3R | 32079331 | 3R | 11566917..11567050 | 134..1 | 670 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 11304910..11305202 | 698..406 | 1450 | 99.6 | Minus |
3R | 31820162 | 3R | 11305271..11305543 | 405..133 | 1365 | 100 | Minus |
3R | 31820162 | 3R | 11307748..11307881 | 134..1 | 670 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 7389572..7389860 | 406..694 | 99 | <- | Minus |
chr3R | 7389929..7390200 | 134..405 | 100 | <- | Minus |
chr3R | 7392407..7392539 | 1..133 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6783-RB | 1..393 | 64..456 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6783-RB | 1..393 | 64..456 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fabp-RB | 1..393 | 64..456 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6783-RB | 1..393 | 64..456 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fabp-RB | 1..393 | 64..456 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6783-RB | 1..693 | 2..694 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6783-RB | 1..693 | 2..694 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fabp-RB | 1..693 | 2..694 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6783-RB | 1..693 | 2..694 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fabp-RB | 5..698 | 1..694 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 11564083..11564371 | 406..694 | 99 | <- | Minus |
3R | 11564440..11564711 | 134..405 | 100 | <- | Minus |
3R | 11566918..11567050 | 1..133 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 11564083..11564371 | 406..694 | 99 | <- | Minus |
3R | 11564440..11564711 | 134..405 | 100 | <- | Minus |
3R | 11566918..11567050 | 1..133 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 11564083..11564371 | 406..694 | 99 | <- | Minus |
3R | 11564440..11564711 | 134..405 | 100 | <- | Minus |
3R | 11566918..11567050 | 1..133 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 7389805..7390093 | 406..694 | 99 | <- | Minus |
arm_3R | 7390162..7390433 | 134..405 | 100 | <- | Minus |
arm_3R | 7392640..7392772 | 1..133 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 11304914..11305202 | 406..694 | 99 | <- | Minus |
3R | 11305271..11305542 | 134..405 | 100 | <- | Minus |
3R | 11307749..11307881 | 1..133 | 100 | Minus |
Translation from 63 to 455
> RH49003.hyp MSFVGKKYKLDKSENFDEYMKELGVGLVTRKMGNSLSPTVEVTLEGDTYT LTTTSTFKTSAISFKLGVEFDEETLDGRNVKSIITLDGNKLTQEQKGDKP TTIVREFTDNELITTLTIGNVKCVRVYKAV*
Translation from 63 to 455
> RH49003.pep MSFVGKKYKLDKSENFDEYMKELGVGLVTRKMGNSLSPTVEVTLEGDTYT LTTTSTFKTSAISFKLGVEFDEETLDGRNVKSIITLDGNKLTQEQKGDKP TTIVREFTDNELITTLTIGNVKCVRVYKAV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16638-PA | 130 | GF16638-PA | 1..130 | 1..130 | 493 | 86.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17215-PA | 130 | GG17215-PA | 1..130 | 1..130 | 647 | 97.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15313-PA | 131 | GH15313-PA | 3..131 | 2..130 | 526 | 89.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
fabp-PB | 130 | CG6783-PB | 1..130 | 1..130 | 656 | 100 | Plus |
fabp-PC | 157 | CG6783-PC | 1..116 | 1..116 | 576 | 98.3 | Plus |
fabp-PA | 117 | CG6783-PA | 11..117 | 24..130 | 536 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22452-PA | 131 | GI22452-PA | 3..131 | 2..130 | 532 | 88.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12263-PA | 131 | GL12263-PA | 3..131 | 2..130 | 491 | 90.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA26243-PA | 99 | GA26243-PA | 1..99 | 32..130 | 345 | 89.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26093-PA | 130 | GM26093-PA | 1..130 | 1..130 | 648 | 98.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20655-PA | 117 | GD20655-PA | 6..117 | 19..130 | 527 | 93.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10051-PA | 131 | GJ10051-PA | 3..131 | 2..130 | 536 | 90.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11787-PA | 131 | GK11787-PA | 3..131 | 2..130 | 529 | 90.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10108-PA | 130 | GE10108-PA | 1..130 | 1..130 | 645 | 97.7 | Plus |