BDGP Sequence Production Resources |
Search the DGRC for RH49324
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 493 |
Well: | 24 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CoVb-RA |
Protein status: | RH49324.pep: gold |
Preliminary Size: | 590 |
Sequenced Size: | 585 |
Gene | Date | Evidence |
---|---|---|
CG11015 | 2002-01-01 | Sim4 clustering to Release 2 |
CG11015 | 2003-02-13 | Blastp of sequenced clone |
CG11015 | 2008-04-29 | Release 5.5 accounting |
CG11015 | 2008-08-15 | Release 5.9 accounting |
CG11015 | 2008-12-18 | 5.12 accounting |
585 bp (585 high quality bases) assembled on 2003-02-13
GenBank Submission: BT004475
> RH49324.complete GACTTTACCGCGGTCACACTGATCCATAGCTGTGTGAAAAATTACGAAAG AATTTTTGGTGTTCACCACTTAAGACCGACCGAAATTTTCGCAAAACGAA CAATGGCATCGATCTGTGGACGCATGGCGCTCCGTGCCGCCGCACGCCAG AATGTTGCCTACACGCCCGTGCGCTTCTGCAAAATGATGAACGATCCTTT GGAGCACGCCACTGGTATCGAGAAGCGCGAGCTGCTGCTTAAGGCCGCCG GCAATGATAACCCCTTCGACATGAAGGTCTTCAAGCGGGGCGCCGGCACC AAGGAGAACCCCAACCTTATTCCATCGGCCTTCGATGCTCGCATTGTGGG CTGCATCTGCGAAGAGGATCAGACCTACGTGCAATGGATGTGGCTGCAGA AGGGCAACCAGAAACGTTGTGAGTGCGGCCATTGGTTCAAGCTGGTGGAG AAGGCAGCTGTTTAAAGTTATTATTAATTAATTCAATAAACCAATTAATA ACAAAAACACAACAACTACTAAGCTAAAAGTCAACCCACTTAGCTGTCCA AATAAACAAACATCAACCCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 6557918..6558128 | 359..569 | 1055 | 100 | Plus |
chr2L | 23010047 | chr2L | 6556781..6556963 | 2..184 | 915 | 100 | Plus |
chr2L | 23010047 | chr2L | 6557397..6557571 | 185..359 | 815 | 97.7 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 6556780..6556963 | 1..184 | 99 | -> | Plus |
chr2L | 6557397..6557570 | 185..358 | 97 | -> | Plus |
chr2L | 6557918..6558128 | 359..569 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11015-RA | 1..363 | 103..465 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11015-RA | 1..363 | 103..465 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CoVb-RA | 1..363 | 103..465 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11015-RA | 1..363 | 103..465 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CoVb-RA | 1..363 | 103..465 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11015-RA | 2..570 | 1..569 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11015-RA | 2..570 | 1..569 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CoVb-RA | 2..570 | 1..569 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11015-RA | 2..570 | 1..569 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CoVb-RA | 2..570 | 1..569 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6557801..6557984 | 1..184 | 99 | -> | Plus |
2L | 6558418..6558591 | 185..358 | 100 | -> | Plus |
2L | 6558939..6559149 | 359..569 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6557801..6557984 | 1..184 | 99 | -> | Plus |
2L | 6558418..6558591 | 185..358 | 100 | -> | Plus |
2L | 6558939..6559149 | 359..569 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6557801..6557984 | 1..184 | 99 | -> | Plus |
2L | 6558418..6558591 | 185..358 | 100 | -> | Plus |
2L | 6558939..6559149 | 359..569 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 6558418..6558591 | 185..358 | 100 | -> | Plus |
arm_2L | 6558939..6559149 | 359..569 | 100 | Plus | |
arm_2L | 6557801..6557984 | 1..184 | 99 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6558939..6559149 | 359..569 | 100 | Plus | |
2L | 6557801..6557984 | 1..184 | 99 | -> | Plus |
2L | 6558418..6558591 | 185..358 | 100 | -> | Plus |
Translation from 0 to 464
> RH49324.hyp YFTAVTLIHSCVKNYERIFGVHHLRPTEIFAKRTMASICGRMALRAAARQ NVAYTPVRFCKMMNDPLEHATGIEKRELLLKAAGNDNPFDMKVFKRGAGT KENPNLIPSAFDARIVGCICEEDQTYVQWMWLQKGNQKRCECGHWFKLVE KAAV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CoVb-PB | 120 | CG11015-PB | 1..120 | 35..154 | 651 | 100 | Plus |
CoVb-PA | 120 | CG11015-PA | 1..120 | 35..154 | 651 | 100 | Plus |
CG11043-PA | 154 | CG11043-PA | 29..148 | 35..148 | 223 | 41.8 | Plus |
Translation from 102 to 464
> RH49324.pep MASICGRMALRAAARQNVAYTPVRFCKMMNDPLEHATGIEKRELLLKAAG NDNPFDMKVFKRGAGTKENPNLIPSAFDARIVGCICEEDQTYVQWMWLQK GNQKRCECGHWFKLVEKAAV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14170-PA | 120 | GF14170-PA | 1..120 | 1..120 | 639 | 98.3 | Plus |
Dana\GF14171-PA | 155 | GF14171-PA | 47..149 | 12..114 | 219 | 41.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10419-PA | 120 | GG10419-PA | 1..120 | 1..120 | 643 | 99.2 | Plus |
Dere\GG10420-PA | 155 | GG10420-PA | 44..149 | 9..114 | 220 | 41.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13841-PA | 120 | GH13841-PA | 1..120 | 1..120 | 616 | 95 | Plus |
Dgri\GH13842-PA | 157 | GH13842-PA | 66..157 | 29..120 | 257 | 53.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
COX5B-PB | 120 | CG11015-PB | 1..120 | 1..120 | 651 | 100 | Plus |
COX5B-PA | 120 | CG11015-PA | 1..120 | 1..120 | 651 | 100 | Plus |
COX5BL-PA | 154 | CG11043-PA | 29..148 | 1..114 | 223 | 41.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20346-PA | 120 | GI20346-PA | 1..120 | 1..120 | 625 | 96.7 | Plus |
Dmoj\GI20357-PA | 160 | GI20357-PA | 53..160 | 12..120 | 279 | 53.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25676-PA | 120 | GL25676-PA | 1..120 | 1..120 | 629 | 96.7 | Plus |
Dper\GL25677-PA | 151 | GL25677-PA | 29..145 | 1..114 | 264 | 45.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA28177-PA | 120 | GA28177-PA | 1..120 | 1..120 | 629 | 96.7 | Plus |
Dpse\GA10709-PA | 120 | GA10709-PA | 1..120 | 1..120 | 629 | 96.7 | Plus |
Dpse\GA28178-PA | 151 | GA28178-PA | 29..145 | 1..114 | 264 | 45.4 | Plus |
Dpse\GA10724-PA | 151 | GA10724-PA | 29..145 | 1..114 | 264 | 45.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM16172-PA | 120 | GM16172-PA | 1..120 | 1..120 | 647 | 100 | Plus |
Dsec\GM16174-PA | 155 | GM16174-PA | 44..149 | 9..114 | 222 | 42.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23418-PA | 120 | GD23418-PA | 1..120 | 1..120 | 647 | 100 | Plus |
Dsim\CoVb-PA | 155 | GD23419-PA | 44..149 | 9..114 | 222 | 42.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13698-PA | 120 | GJ13698-PA | 1..120 | 1..120 | 624 | 96.7 | Plus |
Dvir\GJ13709-PA | 158 | GJ13709-PA | 51..158 | 12..120 | 272 | 50 | Plus |