BDGP Sequence Production Resources |
Search the DGRC for RH49330
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 493 |
Well: | 30 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG5167-RA |
Protein status: | RH49330.pep: gold |
Preliminary Size: | 1453 |
Sequenced Size: | 1590 |
Gene | Date | Evidence |
---|---|---|
CG5167 | 2002-01-01 | Sim4 clustering to Release 2 |
CG5167 | 2003-01-01 | Sim4 clustering to Release 3 |
CG5167 | 2008-04-29 | Release 5.5 accounting |
CG5167 | 2008-08-15 | Release 5.9 accounting |
CG5167 | 2008-12-18 | 5.12 accounting |
1590 bp (1590 high quality bases) assembled on 2006-01-17
GenBank Submission: BT024191
> RH49330.complete GTTTTACCTGTTCGATTCAGTTTTGTACAGTCACGACGCTACTATCTTCA ATAAATACAGCTCTTATACGGTGCGATTAGCATTATTAACATTTCGCCAG TCGGCCGAAGCAGACGAATTACCTTTCGGTCTGGAAGTGATAAGACATTT CTAGTCAAATCATTATAGTCGCATATCTGTGGACTCTGGAATGGCGGCTA AGAAACTGGATGCCATAATCTTCGGTGCCTCCGGGTTTACCGGAAAGTAC ACCGTCTTCGAGGCTGTCAGCGTGCTGAAGGGGCTGCAATGGGGCATCGC CGGACGCAACCAGGAGAAGCTGCAGTCGGTGCTGCGGGAGATGGGTGCAA AGTCCAAGACAGACCTCTCCCAAACGCCGATCGTCATCGCGGACGTGAAC AACGAGGCGTCACTGCTAGAGATGGCCAAACGCTGCCGCATTTTAGTCAA TACGGCCGGACCATATCGGTTCTTCGGCGAGCGAGTGGTCAGGGCTTGCA TCGAGGCGGGAACGCATCACGTAGACGTAAGCGGAGAGCCACAGTACATG GAAACCATGCAGCTGCGCTACCATGATCTCGCCAAGGAGCGTGGCGTGTA CGTGATCAGTGCGTGCGGCTTTGATTCCATTCCCGCCGACATGGGAGTCA CCTTCGTGGAGAAGAACTTCGACGGCGTGGTCAACTCAGTGGAGAACTTT GTCCATCTGGGCGTCAAGGGAGGTACCAAGGGAACGGGCAGTGCTGCACT CAACACCGGCACCTGGGAGAGCGCCATTCACGCTATCGCCAACCGGAGCG AGTCCGTGGCCATCCGGCGCAAGTTGTTTCCCGAGCGTCTGCCCAACTTT CATCCGGCTCTTAAGTCACGATCGCCGCTTTCCCGTGCCGCGGAAGTGGA CAACAAGGTGATCCTGCCGTTCCCTGAAACAGATCGCTCGGTGGTGATGC GCTCGCAGCGTTTCCTTTACGAACTGGAGAAGAAGCGACCCGTTCAGATG CAGGCCTACATGACGTATCCCTCATGGTTTGCGGCCAGCGTTGTCGTGCT CTTCGCCTCTATCATTGGCATTATGGCCAAGTTCTCCTTTGGCCGCCAGC TGCTGCTTAAGTACCCCACCGTCTTCTCCGGCGGCATGGCTTCCCGCGAG GGTCCCAGTGAGGCGCGGATGGAGCGCTCCTTCTTCAGAATGACCATGAA GGCCACAGGCTGGCCCAAGTCCGAAAAACTAGCCGAGACCACCGATCAGT ACACCTCTCCGCCCACAAAGACACTGACCGTGAGGGTTACGGGTCCCAAT CCCGGCTATGGATCCACTTGCGTTGCACTGCTCTCCACGGCGAAGACCAT CCTCAACGAAAGCGACAAGATGCCCGGATCCGGCGGAGTCCTGCCACCCG GAGCAGCCTTCCGTGGCACCAGTCTCATCAGCGAGCTGGAGAAGCACGAG CACGGCATTAAGTTTGAAATCGTGGCCAACAAATAGTGTCTTTAATGAGG TGCATTCGATGTTATTAAAAATACATATATGTATGTATGTATGTTAAATA TATTTATCTTAATATGAAATTTGGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5167-RA | 1576 | CG5167-RA | 5..1576 | 3..1574 | 7830 | 99.8 | Plus |
CG2604-RB | 1648 | CG2604-RB | 448..650 | 497..699 | 475 | 82.2 | Plus |
CG2604-RC | 1895 | CG2604-RC | 636..838 | 497..699 | 475 | 82.2 | Plus |
CG2604-RB | 1648 | CG2604-RB | 156..413 | 205..462 | 405 | 77.1 | Plus |
CG2604-RC | 1895 | CG2604-RC | 344..601 | 205..462 | 405 | 77.1 | Plus |
CG2604-RB | 1648 | CG2604-RB | 1312..1438 | 1364..1490 | 230 | 78.7 | Plus |
CG2604-RC | 1895 | CG2604-RC | 1500..1626 | 1364..1490 | 230 | 78.7 | Plus |
CG2604-RB | 1648 | CG2604-RB | 883..957 | 935..1009 | 180 | 82.6 | Plus |
CG2604-RC | 1895 | CG2604-RC | 1071..1145 | 935..1009 | 180 | 82.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 8231925..8233496 | 3..1574 | 7830 | 99.9 | Plus |
chr3R | 27901430 | chr3R | 1048287..1048781 | 699..205 | 810 | 77.6 | Minus |
chr3R | 27901430 | chr3R | 1047499..1048054 | 1490..935 | 320 | 70.5 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 12406536..12408108 | 3..1575 | 7835 | 99.9 | Plus |
3R | 32079331 | 3R | 5222623..5223117 | 699..205 | 810 | 77.6 | Minus |
3R | 32079331 | 3R | 5221835..5222390 | 1490..935 | 320 | 70.5 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 12147367..12148939 | 3..1575 | 7835 | 99.8 | Plus |
3R | 31820162 | 3R | 4963454..4963656 | 699..497 | 475 | 82.2 | Minus |
3R | 31820162 | 3R | 4963691..4963948 | 462..205 | 405 | 77.1 | Minus |
3R | 31820162 | 3R | 4962666..4962792 | 1490..1364 | 230 | 78.7 | Minus |
3R | 31820162 | 3R | 4963147..4963221 | 1009..935 | 180 | 82.6 | Minus |
3R | 31820162 | 3R | 12144077..12144111 | 3..37 | 160 | 97.1 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 8231921..8233496 | 1..1574 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5167-RA | 1..1296 | 191..1486 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5167-RA | 1..1296 | 191..1486 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5167-RA | 1..1296 | 191..1486 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5167-RA | 1..1296 | 191..1486 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5167-RA | 1..1296 | 191..1486 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5167-RA | 1..1571 | 1..1569 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5167-RA | 1..1571 | 1..1569 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5167-RA | 1..1576 | 1..1574 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5167-RA | 1..1571 | 1..1569 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5167-RA | 1..1576 | 1..1574 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 12406532..12408107 | 1..1574 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 12406532..12408107 | 1..1574 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 12406532..12408107 | 1..1574 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 8232254..8233829 | 1..1574 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 12147363..12148938 | 1..1574 | 99 | Plus |
Translation from 190 to 1485
> RH49330.pep MAAKKLDAIIFGASGFTGKYTVFEAVSVLKGLQWGIAGRNQEKLQSVLRE MGAKSKTDLSQTPIVIADVNNEASLLEMAKRCRILVNTAGPYRFFGERVV RACIEAGTHHVDVSGEPQYMETMQLRYHDLAKERGVYVISACGFDSIPAD MGVTFVEKNFDGVVNSVENFVHLGVKGGTKGTGSAALNTGTWESAIHAIA NRSESVAIRRKLFPERLPNFHPALKSRSPLSRAAEVDNKVILPFPETDRS VVMRSQRFLYELEKKRPVQMQAYMTYPSWFAASVVVLFASIIGIMAKFSF GRQLLLKYPTVFSGGMASREGPSEARMERSFFRMTMKATGWPKSEKLAET TDQYTSPPTKTLTVRVTGPNPGYGSTCVALLSTAKTILNESDKMPGSGGV LPPGAAFRGTSLISELEKHEHGIKFEIVANK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17952-PA | 433 | GF17952-PA | 1..430 | 1..430 | 2002 | 87.2 | Plus |
Dana\GF17500-PA | 430 | GF17500-PA | 2..430 | 3..431 | 1649 | 69.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18861-PA | 431 | GG18861-PA | 1..431 | 1..431 | 2172 | 96.1 | Plus |
Dere\GG11166-PA | 430 | GG11166-PA | 1..430 | 1..431 | 1697 | 71.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13859-PA | 431 | GH13859-PA | 5..431 | 4..431 | 1722 | 72.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sccpdh2-PA | 431 | CG5167-PA | 1..431 | 1..431 | 2208 | 100 | Plus |
Sccpdh1-PB | 430 | CG2604-PB | 1..430 | 1..431 | 1604 | 70.1 | Plus |
Sccpdh1-PC | 430 | CG2604-PC | 1..430 | 1..431 | 1604 | 70.1 | Plus |
Sccpdh1-PA | 430 | CG2604-PA | 1..430 | 1..431 | 1604 | 70.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24823-PA | 431 | GI24823-PA | 1..431 | 1..431 | 1756 | 75.7 | Plus |
Dmoj\GI20982-PA | 435 | GI20982-PA | 9..431 | 5..431 | 1282 | 55.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24001-PA | 430 | GL24001-PA | 1..430 | 1..431 | 1740 | 74.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18705-PA | 612 | GA18705-PA | 183..612 | 1..431 | 2052 | 87.7 | Plus |
Dpse\GA15398-PA | 430 | GA15398-PA | 1..430 | 1..431 | 1734 | 74.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24027-PA | 431 | GM24027-PA | 1..431 | 1..431 | 2261 | 97.7 | Plus |
Dsec\GM10657-PA | 427 | GM10657-PA | 1..427 | 1..431 | 1658 | 69.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18827-PA | 431 | GD18827-PA | 1..431 | 1..431 | 2250 | 97.2 | Plus |
Dsim\GD19638-PA | 430 | GD19638-PA | 1..430 | 1..431 | 1650 | 69.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24467-PA | 430 | GJ24467-PA | 1..430 | 1..431 | 1751 | 74.7 | Plus |
Dvir\GJ20702-PA | 133 | GJ20702-PA | 1..131 | 84..250 | 260 | 40.1 | Plus |
Translation from 190 to 1485
> RH49330.hyp MAAKKLDAIIFGASGFTGKYTVFEAVSVLKGLQWGIAGRNQEKLQSVLRE MGAKSKTDLSQTPIVIADVNNEASLLEMAKRCRILVNTAGPYRFFGERVV RACIEAGTHHVDVSGEPQYMETMQLRYHDLAKERGVYVISACGFDSIPAD MGVTFVEKNFDGVVNSVENFVHLGVKGGTKGTGSAALNTGTWESAIHAIA NRSESVAIRRKLFPERLPNFHPALKSRSPLSRAAEVDNKVILPFPETDRS VVMRSQRFLYELEKKRPVQMQAYMTYPSWFAASVVVLFASIIGIMAKFSF GRQLLLKYPTVFSGGMASREGPSEARMERSFFRMTMKATGWPKSEKLAET TDQYTSPPTKTLTVRVTGPNPGYGSTCVALLSTAKTILNESDKMPGSGGV LPPGAAFRGTSLISELEKHEHGIKFEIVANK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5167-PA | 431 | CG5167-PA | 1..431 | 1..431 | 2208 | 100 | Plus |
CG2604-PB | 430 | CG2604-PB | 1..430 | 1..431 | 1604 | 70.1 | Plus |
CG2604-PC | 430 | CG2604-PC | 1..430 | 1..431 | 1604 | 70.1 | Plus |
CG2604-PA | 430 | CG2604-PA | 1..430 | 1..431 | 1604 | 70.1 | Plus |