Clone RH49330 Report

Search the DGRC for RH49330

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:493
Well:30
Vector:pFlc-1
Associated Gene/TranscriptCG5167-RA
Protein status:RH49330.pep: gold
Preliminary Size:1453
Sequenced Size:1590

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5167 2002-01-01 Sim4 clustering to Release 2
CG5167 2003-01-01 Sim4 clustering to Release 3
CG5167 2008-04-29 Release 5.5 accounting
CG5167 2008-08-15 Release 5.9 accounting
CG5167 2008-12-18 5.12 accounting

Clone Sequence Records

RH49330.complete Sequence

1590 bp (1590 high quality bases) assembled on 2006-01-17

GenBank Submission: BT024191

> RH49330.complete
GTTTTACCTGTTCGATTCAGTTTTGTACAGTCACGACGCTACTATCTTCA
ATAAATACAGCTCTTATACGGTGCGATTAGCATTATTAACATTTCGCCAG
TCGGCCGAAGCAGACGAATTACCTTTCGGTCTGGAAGTGATAAGACATTT
CTAGTCAAATCATTATAGTCGCATATCTGTGGACTCTGGAATGGCGGCTA
AGAAACTGGATGCCATAATCTTCGGTGCCTCCGGGTTTACCGGAAAGTAC
ACCGTCTTCGAGGCTGTCAGCGTGCTGAAGGGGCTGCAATGGGGCATCGC
CGGACGCAACCAGGAGAAGCTGCAGTCGGTGCTGCGGGAGATGGGTGCAA
AGTCCAAGACAGACCTCTCCCAAACGCCGATCGTCATCGCGGACGTGAAC
AACGAGGCGTCACTGCTAGAGATGGCCAAACGCTGCCGCATTTTAGTCAA
TACGGCCGGACCATATCGGTTCTTCGGCGAGCGAGTGGTCAGGGCTTGCA
TCGAGGCGGGAACGCATCACGTAGACGTAAGCGGAGAGCCACAGTACATG
GAAACCATGCAGCTGCGCTACCATGATCTCGCCAAGGAGCGTGGCGTGTA
CGTGATCAGTGCGTGCGGCTTTGATTCCATTCCCGCCGACATGGGAGTCA
CCTTCGTGGAGAAGAACTTCGACGGCGTGGTCAACTCAGTGGAGAACTTT
GTCCATCTGGGCGTCAAGGGAGGTACCAAGGGAACGGGCAGTGCTGCACT
CAACACCGGCACCTGGGAGAGCGCCATTCACGCTATCGCCAACCGGAGCG
AGTCCGTGGCCATCCGGCGCAAGTTGTTTCCCGAGCGTCTGCCCAACTTT
CATCCGGCTCTTAAGTCACGATCGCCGCTTTCCCGTGCCGCGGAAGTGGA
CAACAAGGTGATCCTGCCGTTCCCTGAAACAGATCGCTCGGTGGTGATGC
GCTCGCAGCGTTTCCTTTACGAACTGGAGAAGAAGCGACCCGTTCAGATG
CAGGCCTACATGACGTATCCCTCATGGTTTGCGGCCAGCGTTGTCGTGCT
CTTCGCCTCTATCATTGGCATTATGGCCAAGTTCTCCTTTGGCCGCCAGC
TGCTGCTTAAGTACCCCACCGTCTTCTCCGGCGGCATGGCTTCCCGCGAG
GGTCCCAGTGAGGCGCGGATGGAGCGCTCCTTCTTCAGAATGACCATGAA
GGCCACAGGCTGGCCCAAGTCCGAAAAACTAGCCGAGACCACCGATCAGT
ACACCTCTCCGCCCACAAAGACACTGACCGTGAGGGTTACGGGTCCCAAT
CCCGGCTATGGATCCACTTGCGTTGCACTGCTCTCCACGGCGAAGACCAT
CCTCAACGAAAGCGACAAGATGCCCGGATCCGGCGGAGTCCTGCCACCCG
GAGCAGCCTTCCGTGGCACCAGTCTCATCAGCGAGCTGGAGAAGCACGAG
CACGGCATTAAGTTTGAAATCGTGGCCAACAAATAGTGTCTTTAATGAGG
TGCATTCGATGTTATTAAAAATACATATATGTATGTATGTATGTTAAATA
TATTTATCTTAATATGAAATTTGGAAAAAAAAAAAAAAAA

RH49330.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:21:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG5167-RA 1576 CG5167-RA 5..1576 3..1574 7830 99.8 Plus
CG2604-RB 1648 CG2604-RB 448..650 497..699 475 82.2 Plus
CG2604-RC 1895 CG2604-RC 636..838 497..699 475 82.2 Plus
CG2604-RB 1648 CG2604-RB 156..413 205..462 405 77.1 Plus
CG2604-RC 1895 CG2604-RC 344..601 205..462 405 77.1 Plus
CG2604-RB 1648 CG2604-RB 1312..1438 1364..1490 230 78.7 Plus
CG2604-RC 1895 CG2604-RC 1500..1626 1364..1490 230 78.7 Plus
CG2604-RB 1648 CG2604-RB 883..957 935..1009 180 82.6 Plus
CG2604-RC 1895 CG2604-RC 1071..1145 935..1009 180 82.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:54:59
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 8231925..8233496 3..1574 7830 99.9 Plus
chr3R 27901430 chr3R 1048287..1048781 699..205 810 77.6 Minus
chr3R 27901430 chr3R 1047499..1048054 1490..935 320 70.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:31:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:54:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12406536..12408108 3..1575 7835 99.9 Plus
3R 32079331 3R 5222623..5223117 699..205 810 77.6 Minus
3R 32079331 3R 5221835..5222390 1490..935 320 70.5 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:14:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 12147367..12148939 3..1575 7835 99.8 Plus
3R 31820162 3R 4963454..4963656 699..497 475 82.2 Minus
3R 31820162 3R 4963691..4963948 462..205 405 77.1 Minus
3R 31820162 3R 4962666..4962792 1490..1364 230 78.7 Minus
3R 31820162 3R 4963147..4963221 1009..935 180 82.6 Minus
3R 31820162 3R 12144077..12144111 3..37 160 97.1 Plus
Blast to na_te.dros performed on 2019-03-15 22:54:57 has no hits.

RH49330.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:55:49 Download gff for RH49330.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 8231921..8233496 1..1574 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:48:39 Download gff for RH49330.complete
Subject Subject Range Query Range Percent Splice Strand
CG5167-RA 1..1296 191..1486 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:38:35 Download gff for RH49330.complete
Subject Subject Range Query Range Percent Splice Strand
CG5167-RA 1..1296 191..1486 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:23:18 Download gff for RH49330.complete
Subject Subject Range Query Range Percent Splice Strand
CG5167-RA 1..1296 191..1486 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:13:40 Download gff for RH49330.complete
Subject Subject Range Query Range Percent Splice Strand
CG5167-RA 1..1296 191..1486 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:38:44 Download gff for RH49330.complete
Subject Subject Range Query Range Percent Splice Strand
CG5167-RA 1..1296 191..1486 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:10:33 Download gff for RH49330.complete
Subject Subject Range Query Range Percent Splice Strand
CG5167-RA 1..1571 1..1569 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:38:35 Download gff for RH49330.complete
Subject Subject Range Query Range Percent Splice Strand
CG5167-RA 1..1571 1..1569 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:23:18 Download gff for RH49330.complete
Subject Subject Range Query Range Percent Splice Strand
CG5167-RA 1..1576 1..1574 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:13:40 Download gff for RH49330.complete
Subject Subject Range Query Range Percent Splice Strand
CG5167-RA 1..1571 1..1569 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:38:44 Download gff for RH49330.complete
Subject Subject Range Query Range Percent Splice Strand
CG5167-RA 1..1576 1..1574 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:55:49 Download gff for RH49330.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12406532..12408107 1..1574 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:55:49 Download gff for RH49330.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12406532..12408107 1..1574 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:55:49 Download gff for RH49330.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12406532..12408107 1..1574 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:23:18 Download gff for RH49330.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8232254..8233829 1..1574 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:01:29 Download gff for RH49330.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12147363..12148938 1..1574 99   Plus

RH49330.pep Sequence

Translation from 190 to 1485

> RH49330.pep
MAAKKLDAIIFGASGFTGKYTVFEAVSVLKGLQWGIAGRNQEKLQSVLRE
MGAKSKTDLSQTPIVIADVNNEASLLEMAKRCRILVNTAGPYRFFGERVV
RACIEAGTHHVDVSGEPQYMETMQLRYHDLAKERGVYVISACGFDSIPAD
MGVTFVEKNFDGVVNSVENFVHLGVKGGTKGTGSAALNTGTWESAIHAIA
NRSESVAIRRKLFPERLPNFHPALKSRSPLSRAAEVDNKVILPFPETDRS
VVMRSQRFLYELEKKRPVQMQAYMTYPSWFAASVVVLFASIIGIMAKFSF
GRQLLLKYPTVFSGGMASREGPSEARMERSFFRMTMKATGWPKSEKLAET
TDQYTSPPTKTLTVRVTGPNPGYGSTCVALLSTAKTILNESDKMPGSGGV
LPPGAAFRGTSLISELEKHEHGIKFEIVANK*

RH49330.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 13:25:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17952-PA 433 GF17952-PA 1..430 1..430 2002 87.2 Plus
Dana\GF17500-PA 430 GF17500-PA 2..430 3..431 1649 69.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 13:25:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18861-PA 431 GG18861-PA 1..431 1..431 2172 96.1 Plus
Dere\GG11166-PA 430 GG11166-PA 1..430 1..431 1697 71.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 13:25:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13859-PA 431 GH13859-PA 5..431 4..431 1722 72.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:50:02
Subject Length Description Subject Range Query Range Score Percent Strand
Sccpdh2-PA 431 CG5167-PA 1..431 1..431 2208 100 Plus
Sccpdh1-PB 430 CG2604-PB 1..430 1..431 1604 70.1 Plus
Sccpdh1-PC 430 CG2604-PC 1..430 1..431 1604 70.1 Plus
Sccpdh1-PA 430 CG2604-PA 1..430 1..431 1604 70.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 13:25:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24823-PA 431 GI24823-PA 1..431 1..431 1756 75.7 Plus
Dmoj\GI20982-PA 435 GI20982-PA 9..431 5..431 1282 55.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 13:25:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24001-PA 430 GL24001-PA 1..430 1..431 1740 74.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 13:25:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18705-PA 612 GA18705-PA 183..612 1..431 2052 87.7 Plus
Dpse\GA15398-PA 430 GA15398-PA 1..430 1..431 1734 74.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 13:25:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24027-PA 431 GM24027-PA 1..431 1..431 2261 97.7 Plus
Dsec\GM10657-PA 427 GM10657-PA 1..427 1..431 1658 69.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 13:25:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18827-PA 431 GD18827-PA 1..431 1..431 2250 97.2 Plus
Dsim\GD19638-PA 430 GD19638-PA 1..430 1..431 1650 69.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 13:25:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24467-PA 430 GJ24467-PA 1..430 1..431 1751 74.7 Plus
Dvir\GJ20702-PA 133 GJ20702-PA 1..131 84..250 260 40.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 13:25:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13975-PA 430 GK13975-PA 1..430 1..431 1959 83.5 Plus
Dwil\GK14366-PA 434 GK14366-PA 5..434 2..431 1727 73.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 13:25:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26188-PA 431 GE26188-PA 1..431 1..431 2254 96.8 Plus
Dyak\GE25305-PA 430 GE25305-PA 1..430 1..431 1664 70.5 Plus

RH49330.hyp Sequence

Translation from 190 to 1485

> RH49330.hyp
MAAKKLDAIIFGASGFTGKYTVFEAVSVLKGLQWGIAGRNQEKLQSVLRE
MGAKSKTDLSQTPIVIADVNNEASLLEMAKRCRILVNTAGPYRFFGERVV
RACIEAGTHHVDVSGEPQYMETMQLRYHDLAKERGVYVISACGFDSIPAD
MGVTFVEKNFDGVVNSVENFVHLGVKGGTKGTGSAALNTGTWESAIHAIA
NRSESVAIRRKLFPERLPNFHPALKSRSPLSRAAEVDNKVILPFPETDRS
VVMRSQRFLYELEKKRPVQMQAYMTYPSWFAASVVVLFASIIGIMAKFSF
GRQLLLKYPTVFSGGMASREGPSEARMERSFFRMTMKATGWPKSEKLAET
TDQYTSPPTKTLTVRVTGPNPGYGSTCVALLSTAKTILNESDKMPGSGGV
LPPGAAFRGTSLISELEKHEHGIKFEIVANK*

RH49330.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:57:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG5167-PA 431 CG5167-PA 1..431 1..431 2208 100 Plus
CG2604-PB 430 CG2604-PB 1..430 1..431 1604 70.1 Plus
CG2604-PC 430 CG2604-PC 1..430 1..431 1604 70.1 Plus
CG2604-PA 430 CG2604-PA 1..430 1..431 1604 70.1 Plus