BDGP Sequence Production Resources |
Search the DGRC for RH49854
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 498 |
Well: | 54 |
Vector: | pFlc-1 |
Associated Gene/Transcript | eas-RA |
Protein status: | RH49854.pep: gold |
Preliminary Size: | 5240 |
Sequenced Size: | 2227 |
Gene | Date | Evidence |
---|---|---|
CG3525 | 2002-01-01 | Sim4 clustering to Release 2 |
CG3525 | 2002-05-30 | Blastp of sequenced clone |
eas | 2008-04-29 | Release 5.5 accounting |
eas | 2008-08-15 | Release 5.9 accounting |
eas | 2008-12-18 | 5.12 accounting |
2227 bp (2227 high quality bases) assembled on 2002-05-30
GenBank Submission: AY118437
> RH49854.complete GGTTGCACCGATAGTTCGGCAGCTATATATTCCAAGTCGGAACCGAATCG TTTGCATCGCCCGCTGTTCGTTCCCCAGTCAAATTTGTGTGTTGTGTGCG CCAATTTCAGCGGGGGCCAAAATCGATAATCTGGTTGTGTGATTTTCGCG GCTTTTTTTTTGTGTTTTCTTTTAAAAAACAATCAATACCCGAAGAATGG GCACAGAAACCAAGAGCAACAGTTACACAGGACAGATTTCAACAAGTGGC GGCAACCCCAAAGTGATGAAAGATTCTTTATCCTTAGTTCGTCAGACGGT CAATCAGCAAACGCTATCGCTATCGCAATCGAACCAGGTCCAGAACCAAT TGAATTCACATTCGAATTCCAATTCGTATCCAAATCCAAGCGGGAGCGAA AACAAAAACGAAAACGAACAAAATTCGCGCGATATTCGAGCCAAACCGGA GGATAAATCCAGAAAAGAGGCAATTGTACCATTTGTACCCATATTTGTTG AGGAGGCCGACGTAATTCAAGGGGCCAAGGAACTGTTGAAGGTTATACGA CCGACCTGGGACCTCAGCCACGTCGAGTTTAAGAGTTTTACCGATGGCAT CACAAACAAACTGGTCGGATGTTTTCATAAGGAGATCTCCAAACTGAACG ATGAGAACGGCGGATCGTATTTACCTATCAAGACGCAGGGTTTGTCGCCC GTTCAGTCCGAGGATCCAGTCATCATTGAGAAGGAGGACGATGATGAGTT CACAGACGATCGGGCAGCGGACGACGGGTCACCTGTACAGTACTCCGATA ACGTAGTGCTCGTCAGGATATACGGTAACAAAACGGACCTACTGATAGAT CGCAAGGCGGAGACGCAAAACTTTCTTCTACTGCATACGTATGGGCTAGC GCCATCGCTGTATGCCACGTTCAAGAACGGTCTCGTCTACGAATACGTAC CTGGAACCACCCTGAATACGGACAGTGTGCTCTGTCCAGAAATTTGGCCC TTGGTCGCCCGTCGCATGGCCGAGATGCATCGCAAGGTGAGAAAGCACGG GGATAGTTCGGCGACCAAACCCATGCCGATGATTTGGAAGAAGACGCAGA GCTTTCTTGATTTAGTACCTGAACGTTTTAGTGATGCTGAAAAACACAAA AGAGTGAAAGAAACGTTTCTACCTATCGGCCGCCTGCGCGAGGAGTTCAA CAAGCTATATGAATACCTCGAGGCTCTGGACAGTCCGATTGTCTTCTCCC ACAACGATCTTCTGCTGGGAAATGTGATCTATACGCAGAGCCTGAATACG GTGAACTTCATCGACTACGAGTATGCCGATTACAATTTCCAGGCCTTCGA CATTGGCAACCACTTTGCGGAGATGTGCGGCGTGGATGAGGTCGACTATT CGCGCTATCCGAAGCGCGAGTTCCAGCTCCAGTGGCTGAGGGTCTACCTT GAGGAGTACCTACAGCGCAGCAACATTCAAAACGACGAAGTCGAACTGCT CTATGTCCAGGTCAATCAGTTTGCGCTGGCATCGCATATCTTTTGGACGG TGTGGTCCCTGTTGCAAGCCGAGCATTCCACTATCGATTTCGACTACGTA GGCTATGCATTTCTTCGTTATAATGAGTACTTGGCTCGAAAGGTGGAGTT TTTGTCATTGACTGCAGCTAAGAACAATAAGTGATTTCTCTCTCCCGGCC ACTCAGCGCATTGGGAGTTACTACATTATGTGCCCAGTGATATATGTATA AACTAAGGCTGGAACGGGTCTCAATGTTATACATATGTATATATATAACG TGTGTTCAGAAATCAGAAACAAAAACCGAAACAAACTTAAATTAGTGTCG TGTTCGTGCCAGCCTTAGTGTATGTACAGTGCTCACTCGAAACAGTGGAC TATTGAGAACCAAGGGTGTGCACTGAATCGAATTTGTTCACTATAACGAA TCACAGAAAAAATAAACAATTTAATATATTTTTCAAAAACACCACGTTTG AAAAAATTTAATTTTTTTACTAAGTTAAGCGAAAGTTTCTAAAATTTCAT AAATTAATCGTTCACTTTTACTAAAAAGTTCACATATTCGAGTGTTCACT CTTAAGGGAGGGCACTGTATATATAAAGAATTTGTATATGTTCTTTAATT TGTATAAATTGATATTTTGTAGTCATAATAAAGCGAAGGTATGTACTTTA AAATAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
eas-RA | 2384 | eas-RA | 60..2267 | 2..2209 | 11040 | 100 | Plus |
eas-RB | 2420 | eas-RB | 289..2303 | 195..2209 | 10075 | 100 | Plus |
eas-RE | 2365 | eas-RE | 747..2365 | 584..2202 | 8095 | 100 | Plus |
eas-RE | 2365 | eas-RE | 289..678 | 195..584 | 1950 | 100 | Plus |
eas-RB | 2420 | eas-RB | 28..221 | 2..195 | 970 | 100 | Plus |
eas-RE | 2365 | eas-RE | 28..221 | 2..195 | 970 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 16174735..16175337 | 1602..2204 | 2985 | 99.7 | Plus |
chrX | 22417052 | chrX | 16173378..16173952 | 578..1152 | 2815 | 99.3 | Plus |
chrX | 22417052 | chrX | 16174024..16174475 | 1151..1602 | 2245 | 99.8 | Plus |
chrX | 22417052 | chrX | 16170591..16170980 | 194..583 | 1950 | 100 | Plus |
chrX | 22417052 | chrX | 16168056..16168249 | 2..195 | 970 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 16285021..16285628 | 1602..2209 | 3040 | 100 | Plus |
X | 23542271 | X | 16283664..16284238 | 578..1152 | 2860 | 99.8 | Plus |
X | 23542271 | X | 16284310..16284761 | 1151..1602 | 2260 | 100 | Plus |
X | 23542271 | X | 16280884..16281273 | 194..583 | 1950 | 100 | Plus |
X | 23542271 | X | 16278354..16278547 | 2..195 | 970 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 16293119..16293726 | 1602..2209 | 3040 | 100 | Plus |
X | 23527363 | X | 16291762..16292336 | 578..1152 | 2860 | 99.8 | Plus |
X | 23527363 | X | 16292408..16292859 | 1151..1602 | 2260 | 100 | Plus |
X | 23527363 | X | 16288982..16289371 | 194..583 | 1950 | 100 | Plus |
X | 23527363 | X | 16286452..16286645 | 2..195 | 970 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 3991..4037 | 1803..1849 | 118 | 72.3 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 16168055..16168249 | 1..195 | 99 | -> | Plus |
chrX | 16170593..16170980 | 196..583 | 100 | -> | Plus |
chrX | 16173384..16173952 | 584..1152 | 99 | -> | Plus |
chrX | 16174026..16174475 | 1153..1602 | 99 | -> | Plus |
chrX | 16174736..16175337 | 1603..2204 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
eas-RB | 1..1488 | 197..1684 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
eas-RB | 1..1488 | 197..1684 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
eas-RA | 1..1488 | 197..1684 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
eas-RB | 1..1488 | 197..1684 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
eas-RA | 1..1488 | 197..1684 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
eas-RA | 27..2228 | 1..2202 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
eas-RA | 27..2228 | 1..2202 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
eas-RA | 1..2195 | 5..2199 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
eas-RA | 27..2228 | 1..2202 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
eas-RA | 1..2195 | 5..2199 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16278353..16278547 | 1..195 | 99 | -> | Plus |
X | 16280886..16281273 | 196..583 | 100 | -> | Plus |
X | 16283670..16284238 | 584..1152 | 100 | -> | Plus |
X | 16284312..16284761 | 1153..1602 | 100 | -> | Plus |
X | 16285022..16285623 | 1603..2204 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16278353..16278547 | 1..195 | 99 | -> | Plus |
X | 16280886..16281273 | 196..583 | 100 | -> | Plus |
X | 16283670..16284238 | 584..1152 | 100 | -> | Plus |
X | 16284312..16284761 | 1153..1602 | 100 | -> | Plus |
X | 16285022..16285623 | 1603..2204 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16278353..16278547 | 1..195 | 99 | -> | Plus |
X | 16280886..16281273 | 196..583 | 100 | -> | Plus |
X | 16283670..16284238 | 584..1152 | 100 | -> | Plus |
X | 16284312..16284761 | 1153..1602 | 100 | -> | Plus |
X | 16285022..16285623 | 1603..2204 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 16172386..16172580 | 1..195 | 99 | -> | Plus |
arm_X | 16174919..16175306 | 196..583 | 100 | -> | Plus |
arm_X | 16177703..16178271 | 584..1152 | 100 | -> | Plus |
arm_X | 16178345..16178794 | 1153..1602 | 100 | -> | Plus |
arm_X | 16179055..16179656 | 1603..2204 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16288984..16289371 | 196..583 | 100 | -> | Plus |
X | 16291768..16292336 | 584..1152 | 100 | -> | Plus |
X | 16292410..16292859 | 1153..1602 | 100 | -> | Plus |
X | 16293120..16293721 | 1603..2204 | 100 | Plus | |
X | 16286451..16286645 | 1..195 | 99 | -> | Plus |
Translation from 196 to 1683
> RH49854.pep MGTETKSNSYTGQISTSGGNPKVMKDSLSLVRQTVNQQTLSLSQSNQVQN QLNSHSNSNSYPNPSGSENKNENEQNSRDIRAKPEDKSRKEAIVPFVPIF VEEADVIQGAKELLKVIRPTWDLSHVEFKSFTDGITNKLVGCFHKEISKL NDENGGSYLPIKTQGLSPVQSEDPVIIEKEDDDEFTDDRAADDGSPVQYS DNVVLVRIYGNKTDLLIDRKAETQNFLLLHTYGLAPSLYATFKNGLVYEY VPGTTLNTDSVLCPEIWPLVARRMAEMHRKVRKHGDSSATKPMPMIWKKT QSFLDLVPERFSDAEKHKRVKETFLPIGRLREEFNKLYEYLEALDSPIVF SHNDLLLGNVIYTQSLNTVNFIDYEYADYNFQAFDIGNHFAEMCGVDEVD YSRYPKREFQLQWLRVYLEEYLQRSNIQNDEVELLYVQVNQFALASHIFW TVWSLLQAEHSTIDFDYVGYAFLRYNEYLARKVEFLSLTAAKNNK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF19030-PA | 478 | GF19030-PA | 1..468 | 1..492 | 2094 | 82.5 | Plus |
Dana\GF14425-PA | 529 | GF14425-PA | 403..528 | 371..487 | 155 | 30.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17946-PA | 496 | GG17946-PA | 10..496 | 31..495 | 2367 | 92.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12558-PA | 497 | GH12558-PA | 1..497 | 1..495 | 1890 | 74.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
eas-PI | 495 | CG3525-PI | 1..495 | 1..495 | 2586 | 100 | Plus |
eas-PH | 495 | CG3525-PH | 1..495 | 1..495 | 2586 | 100 | Plus |
eas-PA | 495 | CG3525-PA | 1..495 | 1..495 | 2586 | 100 | Plus |
eas-PB | 495 | CG3525-PB | 1..495 | 1..495 | 2586 | 100 | Plus |
eas-PC | 495 | CG3525-PC | 1..495 | 1..495 | 2586 | 100 | Plus |
eas-PJ | 171 | CG3525-PJ | 1..129 | 1..129 | 656 | 100 | Plus |
eas-PF | 171 | CG3525-PF | 1..129 | 1..129 | 656 | 100 | Plus |
eas-PG | 150 | CG3525-PG | 10..108 | 31..129 | 505 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11211-PA | 503 | GI11211-PA | 1..503 | 1..495 | 1937 | 76.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21336-PA | 308 | GL21336-PA | 125..308 | 315..495 | 863 | 87 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17499-PA | 504 | GA17499-PA | 1..504 | 1..495 | 1916 | 77 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13416-PA | 428 | GM13416-PA | 31..428 | 85..495 | 1906 | 84.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24830-PA | 494 | GD24830-PA | 1..493 | 1..470 | 2443 | 93.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18505-PA | 467 | GJ18505-PA | 1..467 | 1..495 | 2016 | 78.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25716-PA | 505 | GK25716-PA | 1..505 | 1..495 | 1892 | 73.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE17256-PA | 501 | GE17256-PA | 10..501 | 31..495 | 2357 | 91.3 | Plus |
Translation from 196 to 1683
> RH49854.hyp MGTETKSNSYTGQISTSGGNPKVMKDSLSLVRQTVNQQTLSLSQSNQVQN QLNSHSNSNSYPNPSGSENKNENEQNSRDIRAKPEDKSRKEAIVPFVPIF VEEADVIQGAKELLKVIRPTWDLSHVEFKSFTDGITNKLVGCFHKEISKL NDENGGSYLPIKTQGLSPVQSEDPVIIEKEDDDEFTDDRAADDGSPVQYS DNVVLVRIYGNKTDLLIDRKAETQNFLLLHTYGLAPSLYATFKNGLVYEY VPGTTLNTDSVLCPEIWPLVARRMAEMHRKVRKHGDSSATKPMPMIWKKT QSFLDLVPERFSDAEKHKRVKETFLPIGRLREEFNKLYEYLEALDSPIVF SHNDLLLGNVIYTQSLNTVNFIDYEYADYNFQAFDIGNHFAEMCGVDEVD YSRYPKREFQLQWLRVYLEEYLQRSNIQNDEVELLYVQVNQFALASHIFW TVWSLLQAEHSTIDFDYVGYAFLRYNEYLARKVEFLSLTAAKNNK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
eas-PI | 495 | CG3525-PI | 1..495 | 1..495 | 2586 | 100 | Plus |
eas-PH | 495 | CG3525-PH | 1..495 | 1..495 | 2586 | 100 | Plus |
eas-PA | 495 | CG3525-PA | 1..495 | 1..495 | 2586 | 100 | Plus |
eas-PB | 495 | CG3525-PB | 1..495 | 1..495 | 2586 | 100 | Plus |
eas-PC | 495 | CG3525-PC | 1..495 | 1..495 | 2586 | 100 | Plus |