Clone RH49854 Report

Search the DGRC for RH49854

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:498
Well:54
Vector:pFlc-1
Associated Gene/Transcripteas-RA
Protein status:RH49854.pep: gold
Preliminary Size:5240
Sequenced Size:2227

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3525 2002-01-01 Sim4 clustering to Release 2
CG3525 2002-05-30 Blastp of sequenced clone
eas 2008-04-29 Release 5.5 accounting
eas 2008-08-15 Release 5.9 accounting
eas 2008-12-18 5.12 accounting

Clone Sequence Records

RH49854.complete Sequence

2227 bp (2227 high quality bases) assembled on 2002-05-30

GenBank Submission: AY118437

> RH49854.complete
GGTTGCACCGATAGTTCGGCAGCTATATATTCCAAGTCGGAACCGAATCG
TTTGCATCGCCCGCTGTTCGTTCCCCAGTCAAATTTGTGTGTTGTGTGCG
CCAATTTCAGCGGGGGCCAAAATCGATAATCTGGTTGTGTGATTTTCGCG
GCTTTTTTTTTGTGTTTTCTTTTAAAAAACAATCAATACCCGAAGAATGG
GCACAGAAACCAAGAGCAACAGTTACACAGGACAGATTTCAACAAGTGGC
GGCAACCCCAAAGTGATGAAAGATTCTTTATCCTTAGTTCGTCAGACGGT
CAATCAGCAAACGCTATCGCTATCGCAATCGAACCAGGTCCAGAACCAAT
TGAATTCACATTCGAATTCCAATTCGTATCCAAATCCAAGCGGGAGCGAA
AACAAAAACGAAAACGAACAAAATTCGCGCGATATTCGAGCCAAACCGGA
GGATAAATCCAGAAAAGAGGCAATTGTACCATTTGTACCCATATTTGTTG
AGGAGGCCGACGTAATTCAAGGGGCCAAGGAACTGTTGAAGGTTATACGA
CCGACCTGGGACCTCAGCCACGTCGAGTTTAAGAGTTTTACCGATGGCAT
CACAAACAAACTGGTCGGATGTTTTCATAAGGAGATCTCCAAACTGAACG
ATGAGAACGGCGGATCGTATTTACCTATCAAGACGCAGGGTTTGTCGCCC
GTTCAGTCCGAGGATCCAGTCATCATTGAGAAGGAGGACGATGATGAGTT
CACAGACGATCGGGCAGCGGACGACGGGTCACCTGTACAGTACTCCGATA
ACGTAGTGCTCGTCAGGATATACGGTAACAAAACGGACCTACTGATAGAT
CGCAAGGCGGAGACGCAAAACTTTCTTCTACTGCATACGTATGGGCTAGC
GCCATCGCTGTATGCCACGTTCAAGAACGGTCTCGTCTACGAATACGTAC
CTGGAACCACCCTGAATACGGACAGTGTGCTCTGTCCAGAAATTTGGCCC
TTGGTCGCCCGTCGCATGGCCGAGATGCATCGCAAGGTGAGAAAGCACGG
GGATAGTTCGGCGACCAAACCCATGCCGATGATTTGGAAGAAGACGCAGA
GCTTTCTTGATTTAGTACCTGAACGTTTTAGTGATGCTGAAAAACACAAA
AGAGTGAAAGAAACGTTTCTACCTATCGGCCGCCTGCGCGAGGAGTTCAA
CAAGCTATATGAATACCTCGAGGCTCTGGACAGTCCGATTGTCTTCTCCC
ACAACGATCTTCTGCTGGGAAATGTGATCTATACGCAGAGCCTGAATACG
GTGAACTTCATCGACTACGAGTATGCCGATTACAATTTCCAGGCCTTCGA
CATTGGCAACCACTTTGCGGAGATGTGCGGCGTGGATGAGGTCGACTATT
CGCGCTATCCGAAGCGCGAGTTCCAGCTCCAGTGGCTGAGGGTCTACCTT
GAGGAGTACCTACAGCGCAGCAACATTCAAAACGACGAAGTCGAACTGCT
CTATGTCCAGGTCAATCAGTTTGCGCTGGCATCGCATATCTTTTGGACGG
TGTGGTCCCTGTTGCAAGCCGAGCATTCCACTATCGATTTCGACTACGTA
GGCTATGCATTTCTTCGTTATAATGAGTACTTGGCTCGAAAGGTGGAGTT
TTTGTCATTGACTGCAGCTAAGAACAATAAGTGATTTCTCTCTCCCGGCC
ACTCAGCGCATTGGGAGTTACTACATTATGTGCCCAGTGATATATGTATA
AACTAAGGCTGGAACGGGTCTCAATGTTATACATATGTATATATATAACG
TGTGTTCAGAAATCAGAAACAAAAACCGAAACAAACTTAAATTAGTGTCG
TGTTCGTGCCAGCCTTAGTGTATGTACAGTGCTCACTCGAAACAGTGGAC
TATTGAGAACCAAGGGTGTGCACTGAATCGAATTTGTTCACTATAACGAA
TCACAGAAAAAATAAACAATTTAATATATTTTTCAAAAACACCACGTTTG
AAAAAATTTAATTTTTTTACTAAGTTAAGCGAAAGTTTCTAAAATTTCAT
AAATTAATCGTTCACTTTTACTAAAAAGTTCACATATTCGAGTGTTCACT
CTTAAGGGAGGGCACTGTATATATAAAGAATTTGTATATGTTCTTTAATT
TGTATAAATTGATATTTTGTAGTCATAATAAAGCGAAGGTATGTACTTTA
AAATAAAAAAAAAAAAAAAAAAAAAAA

RH49854.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:57:03
Subject Length Description Subject Range Query Range Score Percent Strand
eas-RA 2384 eas-RA 60..2267 2..2209 11040 100 Plus
eas-RB 2420 eas-RB 289..2303 195..2209 10075 100 Plus
eas-RE 2365 eas-RE 747..2365 584..2202 8095 100 Plus
eas-RE 2365 eas-RE 289..678 195..584 1950 100 Plus
eas-RB 2420 eas-RB 28..221 2..195 970 100 Plus
eas-RE 2365 eas-RE 28..221 2..195 970 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:55:07
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 16174735..16175337 1602..2204 2985 99.7 Plus
chrX 22417052 chrX 16173378..16173952 578..1152 2815 99.3 Plus
chrX 22417052 chrX 16174024..16174475 1151..1602 2245 99.8 Plus
chrX 22417052 chrX 16170591..16170980 194..583 1950 100 Plus
chrX 22417052 chrX 16168056..16168249 2..195 970 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:32:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:55:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16285021..16285628 1602..2209 3040 100 Plus
X 23542271 X 16283664..16284238 578..1152 2860 99.8 Plus
X 23542271 X 16284310..16284761 1151..1602 2260 100 Plus
X 23542271 X 16280884..16281273 194..583 1950 100 Plus
X 23542271 X 16278354..16278547 2..195 970 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:29:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 16293119..16293726 1602..2209 3040 100 Plus
X 23527363 X 16291762..16292336 578..1152 2860 99.8 Plus
X 23527363 X 16292408..16292859 1151..1602 2260 100 Plus
X 23527363 X 16288982..16289371 194..583 1950 100 Plus
X 23527363 X 16286452..16286645 2..195 970 100 Plus
Blast to na_te.dros performed 2019-03-15 22:55:05
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy12 10218 gypsy12 GYPSY12 10218bp 3991..4037 1803..1849 118 72.3 Plus

RH49854.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:55:52 Download gff for RH49854.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 16168055..16168249 1..195 99 -> Plus
chrX 16170593..16170980 196..583 100 -> Plus
chrX 16173384..16173952 584..1152 99 -> Plus
chrX 16174026..16174475 1153..1602 99 -> Plus
chrX 16174736..16175337 1603..2204 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:48:48 Download gff for RH49854.complete
Subject Subject Range Query Range Percent Splice Strand
eas-RB 1..1488 197..1684 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:35:51 Download gff for RH49854.complete
Subject Subject Range Query Range Percent Splice Strand
eas-RB 1..1488 197..1684 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:23:25 Download gff for RH49854.complete
Subject Subject Range Query Range Percent Splice Strand
eas-RA 1..1488 197..1684 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:27:26 Download gff for RH49854.complete
Subject Subject Range Query Range Percent Splice Strand
eas-RB 1..1488 197..1684 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:38:51 Download gff for RH49854.complete
Subject Subject Range Query Range Percent Splice Strand
eas-RA 1..1488 197..1684 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:07:36 Download gff for RH49854.complete
Subject Subject Range Query Range Percent Splice Strand
eas-RA 27..2228 1..2202 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:35:51 Download gff for RH49854.complete
Subject Subject Range Query Range Percent Splice Strand
eas-RA 27..2228 1..2202 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:23:25 Download gff for RH49854.complete
Subject Subject Range Query Range Percent Splice Strand
eas-RA 1..2195 5..2199 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:27:26 Download gff for RH49854.complete
Subject Subject Range Query Range Percent Splice Strand
eas-RA 27..2228 1..2202 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:38:51 Download gff for RH49854.complete
Subject Subject Range Query Range Percent Splice Strand
eas-RA 1..2195 5..2199 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:55:52 Download gff for RH49854.complete
Subject Subject Range Query Range Percent Splice Strand
X 16278353..16278547 1..195 99 -> Plus
X 16280886..16281273 196..583 100 -> Plus
X 16283670..16284238 584..1152 100 -> Plus
X 16284312..16284761 1153..1602 100 -> Plus
X 16285022..16285623 1603..2204 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:55:52 Download gff for RH49854.complete
Subject Subject Range Query Range Percent Splice Strand
X 16278353..16278547 1..195 99 -> Plus
X 16280886..16281273 196..583 100 -> Plus
X 16283670..16284238 584..1152 100 -> Plus
X 16284312..16284761 1153..1602 100 -> Plus
X 16285022..16285623 1603..2204 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:55:52 Download gff for RH49854.complete
Subject Subject Range Query Range Percent Splice Strand
X 16278353..16278547 1..195 99 -> Plus
X 16280886..16281273 196..583 100 -> Plus
X 16283670..16284238 584..1152 100 -> Plus
X 16284312..16284761 1153..1602 100 -> Plus
X 16285022..16285623 1603..2204 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:23:25 Download gff for RH49854.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16172386..16172580 1..195 99 -> Plus
arm_X 16174919..16175306 196..583 100 -> Plus
arm_X 16177703..16178271 584..1152 100 -> Plus
arm_X 16178345..16178794 1153..1602 100 -> Plus
arm_X 16179055..16179656 1603..2204 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:59:56 Download gff for RH49854.complete
Subject Subject Range Query Range Percent Splice Strand
X 16288984..16289371 196..583 100 -> Plus
X 16291768..16292336 584..1152 100 -> Plus
X 16292410..16292859 1153..1602 100 -> Plus
X 16293120..16293721 1603..2204 100   Plus
X 16286451..16286645 1..195 99 -> Plus

RH49854.pep Sequence

Translation from 196 to 1683

> RH49854.pep
MGTETKSNSYTGQISTSGGNPKVMKDSLSLVRQTVNQQTLSLSQSNQVQN
QLNSHSNSNSYPNPSGSENKNENEQNSRDIRAKPEDKSRKEAIVPFVPIF
VEEADVIQGAKELLKVIRPTWDLSHVEFKSFTDGITNKLVGCFHKEISKL
NDENGGSYLPIKTQGLSPVQSEDPVIIEKEDDDEFTDDRAADDGSPVQYS
DNVVLVRIYGNKTDLLIDRKAETQNFLLLHTYGLAPSLYATFKNGLVYEY
VPGTTLNTDSVLCPEIWPLVARRMAEMHRKVRKHGDSSATKPMPMIWKKT
QSFLDLVPERFSDAEKHKRVKETFLPIGRLREEFNKLYEYLEALDSPIVF
SHNDLLLGNVIYTQSLNTVNFIDYEYADYNFQAFDIGNHFAEMCGVDEVD
YSRYPKREFQLQWLRVYLEEYLQRSNIQNDEVELLYVQVNQFALASHIFW
TVWSLLQAEHSTIDFDYVGYAFLRYNEYLARKVEFLSLTAAKNNK*

RH49854.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:21:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19030-PA 478 GF19030-PA 1..468 1..492 2094 82.5 Plus
Dana\GF14425-PA 529 GF14425-PA 403..528 371..487 155 30.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:21:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17946-PA 496 GG17946-PA 10..496 31..495 2367 92.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:21:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12558-PA 497 GH12558-PA 1..497 1..495 1890 74.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:06:10
Subject Length Description Subject Range Query Range Score Percent Strand
eas-PI 495 CG3525-PI 1..495 1..495 2586 100 Plus
eas-PH 495 CG3525-PH 1..495 1..495 2586 100 Plus
eas-PA 495 CG3525-PA 1..495 1..495 2586 100 Plus
eas-PB 495 CG3525-PB 1..495 1..495 2586 100 Plus
eas-PC 495 CG3525-PC 1..495 1..495 2586 100 Plus
eas-PJ 171 CG3525-PJ 1..129 1..129 656 100 Plus
eas-PF 171 CG3525-PF 1..129 1..129 656 100 Plus
eas-PG 150 CG3525-PG 10..108 31..129 505 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:21:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11211-PA 503 GI11211-PA 1..503 1..495 1937 76.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:21:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21336-PA 308 GL21336-PA 125..308 315..495 863 87 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:21:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17499-PA 504 GA17499-PA 1..504 1..495 1916 77 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:21:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13416-PA 428 GM13416-PA 31..428 85..495 1906 84.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:21:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24830-PA 494 GD24830-PA 1..493 1..470 2443 93.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:21:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18505-PA 467 GJ18505-PA 1..467 1..495 2016 78.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:21:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25716-PA 505 GK25716-PA 1..505 1..495 1892 73.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:21:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17256-PA 501 GE17256-PA 10..501 31..495 2357 91.3 Plus

RH49854.hyp Sequence

Translation from 196 to 1683

> RH49854.hyp
MGTETKSNSYTGQISTSGGNPKVMKDSLSLVRQTVNQQTLSLSQSNQVQN
QLNSHSNSNSYPNPSGSENKNENEQNSRDIRAKPEDKSRKEAIVPFVPIF
VEEADVIQGAKELLKVIRPTWDLSHVEFKSFTDGITNKLVGCFHKEISKL
NDENGGSYLPIKTQGLSPVQSEDPVIIEKEDDDEFTDDRAADDGSPVQYS
DNVVLVRIYGNKTDLLIDRKAETQNFLLLHTYGLAPSLYATFKNGLVYEY
VPGTTLNTDSVLCPEIWPLVARRMAEMHRKVRKHGDSSATKPMPMIWKKT
QSFLDLVPERFSDAEKHKRVKETFLPIGRLREEFNKLYEYLEALDSPIVF
SHNDLLLGNVIYTQSLNTVNFIDYEYADYNFQAFDIGNHFAEMCGVDEVD
YSRYPKREFQLQWLRVYLEEYLQRSNIQNDEVELLYVQVNQFALASHIFW
TVWSLLQAEHSTIDFDYVGYAFLRYNEYLARKVEFLSLTAAKNNK*

RH49854.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:54:19
Subject Length Description Subject Range Query Range Score Percent Strand
eas-PI 495 CG3525-PI 1..495 1..495 2586 100 Plus
eas-PH 495 CG3525-PH 1..495 1..495 2586 100 Plus
eas-PA 495 CG3525-PA 1..495 1..495 2586 100 Plus
eas-PB 495 CG3525-PB 1..495 1..495 2586 100 Plus
eas-PC 495 CG3525-PC 1..495 1..495 2586 100 Plus