Clone RH51096 Report

Search the DGRC for RH51096

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:510
Well:96
Vector:pFlc-1
Associated Gene/TranscriptCG15443-RA
Protein status:RH51096.pep: gold
Preliminary Size:1096
Sequenced Size:1295

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15443 2002-01-01 Sim4 clustering to Release 2
CG15443 2003-01-01 Sim4 clustering to Release 3
CG15443 2004-10-25 Blastp of sequenced clone
CG15443 2008-04-29 Release 5.5 accounting
CG15443 2008-08-15 Release 5.9 accounting
CG15443 2008-12-18 5.12 accounting

Clone Sequence Records

RH51096.complete Sequence

1295 bp (1295 high quality bases) assembled on 2004-10-25

GenBank Submission: BT015957

> RH51096.complete
GATTATCGGAATATTGCTCACTTGCTAAGGATTCCATGAAATTTAAACAA
ATGGACTTTGTGACGACAACTGGGGAGGGAAGTTTTCTGCGAAACAAGAT
TCGTGCATATGCCAAGGATCACCGTGTTGAGTGCCGCATAAAGGCGAAAG
ACTCATTGCGCATTGGACTTGGACAGGTTAAGCAGGAAGTGGCGGCTCTT
GAGATGGGCACCAAGGACGTCATTGGAATGGCCAGCAGGATCAAGCGTCG
CAAGCACGCCACCTCCGAGGATCTGTGCCGCTTGTCGCTGGGGTTCCTCC
AGAGCAATGACAACATCAATGCATTCGCAGCTATTCCTGGCGCCATTCAG
GTTCTGGTTAAGGAGCTAACTGGACCTCACATTCAACGACAGACAGATGC
CGTGGAGTGCTTGTGTAATCTTTCCTTGGGCGAGGCCCATGTCTCCGAAA
AGATTGTCACTTTGGCGGGCAGCTACATGGTCACCTACCTTGATGGCAAG
GCCGAACGCCTCAAGCGCAGTTGCCTGTGGACACTGGCCAACGTTCTGGG
CACATGCGACAAGGCCGGCAGCGTATTGCTGCAAATGCAAATAGTACCCA
AGCTGTGGAGGCTCTACATCGAGCCCAATGGCTGCCAAGAAGATGCGGCC
ATCTGCCTCTCCCTGGTGGCCACCCGCTGCCCGCAGCATGTGAGTGACGA
GGATCGAAGGTACATTGGCCAGAATCTGCCTGAGAAGCTCCACGGCCAGC
CTGCCAGCGAGTACTTCATGTACATAGTGCACCAACTGGAAATAGTGACA
CAGGAGCACAAGTTAGATGCTCAACAGGCCGAATGCCTGGTGCGTTTCTT
TGAAGCCACCTTAGCATCGCCAGCCGACCGGCTGTGCCTAATCTACGCCG
TGCGTGTAATGACCAATCTGGTAGCCCTAGGTGACACAAGTCTAATATTC
GCACTGGCAGACCCGCAGAATCTTGTGCAAACCCTAAACCAGCTCTTCGC
TCTGCGAGATCCAGATCTCAACCTGGACGCGATGCGCTTGCTCAAGAACT
GTCTGCACTTGAAGGTAGCAGATTCCAACCTGGTACTGAATAGCTTGCAA
ATATACGCATAGGCTTATGGTTAAGAATAAGTCTTGCAAATCTCTTTATT
GGTCTTAGAGTACATATAAATATAAAGCCACGGACTTTTGAGTACTCGAG
AATGTATTGTAAATGAACATGGATTGCCGCTAAGCAAAACTAAATCACTA
ATGGAAACAGAATAAAATAAATAAATAATAAAAAAAAAAAAAAAA

RH51096.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:55:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG15443-RA 1747 CG15443-RA 444..1728 2..1286 6410 99.9 Plus
CG15435-RA 1934 CG15435-RA 1799..1934 1286..1151 665 99.2 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:12:22
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 4460792..4461699 1279..372 4510 99.8 Minus
chr2L 23010047 chr2L 4461752..4462120 373..5 1725 97.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:32:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:12:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4461650..4462564 1286..372 4560 99.9 Minus
2L 23513712 2L 4462623..4462994 373..2 1860 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:44:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4461650..4462564 1286..372 4560 99.8 Minus
2L 23513712 2L 4462623..4462994 373..2 1860 100 Minus
Blast to na_te.dros performed 2019-03-16 00:12:21
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 6420..6463 1236..1279 130 77.3 Plus
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 1013..1060 1232..1279 123 72.9 Plus

RH51096.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:13:20 Download gff for RH51096.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 4460812..4461698 373..1259 99 <- Minus
chr2L 4461753..4462124 1..372 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:48:58 Download gff for RH51096.complete
Subject Subject Range Query Range Percent Splice Strand
CG15443-RA 1..1077 36..1112 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:28:53 Download gff for RH51096.complete
Subject Subject Range Query Range Percent Splice Strand
CG15443-RA 1..1077 36..1112 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:51:17 Download gff for RH51096.complete
Subject Subject Range Query Range Percent Splice Strand
CG15443-RA 1..1077 36..1112 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:12:50 Download gff for RH51096.complete
Subject Subject Range Query Range Percent Splice Strand
CG15443-RA 1..1077 36..1112 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:01:18 Download gff for RH51096.complete
Subject Subject Range Query Range Percent Splice Strand
CG15443-RA 1..1077 36..1112 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:32:34 Download gff for RH51096.complete
Subject Subject Range Query Range Percent Splice Strand
CG15443-RA 443..1721 1..1279 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:28:53 Download gff for RH51096.complete
Subject Subject Range Query Range Percent Splice Strand
CG15443-RA 1..1278 2..1279 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:51:17 Download gff for RH51096.complete
Subject Subject Range Query Range Percent Splice Strand
CG15443-RA 1..1278 2..1279 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:12:50 Download gff for RH51096.complete
Subject Subject Range Query Range Percent Splice Strand
CG15443-RA 443..1721 1..1279 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:01:18 Download gff for RH51096.complete
Subject Subject Range Query Range Percent Splice Strand
CG15443-RA 1..1278 2..1279 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:13:20 Download gff for RH51096.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4461657..4462563 373..1279 100 <- Minus
2L 4462624..4462994 1..372 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:13:20 Download gff for RH51096.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4461657..4462563 373..1279 100 <- Minus
2L 4462624..4462994 1..372 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:13:20 Download gff for RH51096.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4461657..4462563 373..1279 100 <- Minus
2L 4462624..4462994 1..372 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:51:17 Download gff for RH51096.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4461657..4462563 373..1279 100 <- Minus
arm_2L 4462624..4462994 1..372 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:49:28 Download gff for RH51096.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4462624..4462994 1..372 99   Minus
2L 4461657..4462563 373..1279 100 <- Minus

RH51096.hyp Sequence

Translation from 2 to 1111

> RH51096.hyp
LSEYCSLAKDSMKFKQMDFVTTTGEGSFLRNKIRAYAKDHRVECRIKAKD
SLRIGLGQVKQEVAALEMGTKDVIGMASRIKRRKHATSEDLCRLSLGFLQ
SNDNINAFAAIPGAIQVLVKELTGPHIQRQTDAVECLCNLSLGEAHVSEK
IVTLAGSYMVTYLDGKAERLKRSCLWTLANVLGTCDKAGSVLLQMQIVPK
LWRLYIEPNGCQEDAAICLSLVATRCPQHVSDEDRRYIGQNLPEKLHGQP
ASEYFMYIVHQLEIVTQEHKLDAQQAECLVRFFEATLASPADRLCLIYAV
RVMTNLVALGDTSLIFALADPQNLVQTLNQLFALRDPDLNLDAMRLLKNC
LHLKVADSNLVLNSLQIYA*

RH51096.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:13:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG15443-PB 358 CG15443-PB 1..358 12..369 1832 100 Plus
CG15443-PA 358 CG15443-PA 1..358 12..369 1832 100 Plus

RH51096.pep Sequence

Translation from 35 to 1111

> RH51096.pep
MKFKQMDFVTTTGEGSFLRNKIRAYAKDHRVECRIKAKDSLRIGLGQVKQ
EVAALEMGTKDVIGMASRIKRRKHATSEDLCRLSLGFLQSNDNINAFAAI
PGAIQVLVKELTGPHIQRQTDAVECLCNLSLGEAHVSEKIVTLAGSYMVT
YLDGKAERLKRSCLWTLANVLGTCDKAGSVLLQMQIVPKLWRLYIEPNGC
QEDAAICLSLVATRCPQHVSDEDRRYIGQNLPEKLHGQPASEYFMYIVHQ
LEIVTQEHKLDAQQAECLVRFFEATLASPADRLCLIYAVRVMTNLVALGD
TSLIFALADPQNLVQTLNQLFALRDPDLNLDAMRLLKNCLHLKVADSNLV
LNSLQIYA*

RH51096.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:33:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23989-PA 358 GF23989-PA 8..358 12..358 1057 62.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:33:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24370-PA 353 GG24370-PA 1..353 6..358 1631 86.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:33:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13129-PA 375 GH13129-PA 19..367 18..358 853 48.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:54:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG15443-PB 358 CG15443-PB 1..358 1..358 1832 100 Plus
CG15443-PA 358 CG15443-PA 1..358 1..358 1832 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:33:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22770-PA 368 GI22770-PA 20..368 18..358 926 52 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:33:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15392-PA 364 GL15392-PA 1..364 6..358 1063 59.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:33:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13734-PA 364 GA13734-PA 10..364 14..358 1066 59.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:33:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18086-PA 357 GM18086-PA 1..353 6..358 1744 92.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:33:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22704-PA 357 GD22704-PA 1..353 6..358 1699 91.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:33:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23321-PA 367 GJ23321-PA 1..367 6..358 933 52.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:33:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23924-PA 253 GK23924-PA 16..246 16..245 672 56.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:33:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14709-PA 353 GE14709-PA 1..353 6..358 1599 85.6 Plus