Clone RH51268 Report

Search the DGRC for RH51268

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:512
Well:68
Vector:pFlc-1
Associated Gene/TranscriptCG9368-RB
Protein status:RH51268.pep: gold
Preliminary Size:768
Sequenced Size:1825

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9368 2002-01-01 Sim4 clustering to Release 2
CG9368 2002-04-22 Blastp of sequenced clone
CG9368 2003-01-01 Sim4 clustering to Release 3
CG9368 2008-04-29 Release 5.5 accounting
CG9368 2008-08-15 Release 5.9 accounting
CG9368 2008-12-18 5.12 accounting

Clone Sequence Records

RH51268.complete Sequence

1825 bp (1825 high quality bases) assembled on 2002-04-22

GenBank Submission: AY113598

> RH51268.complete
CATTGCTGGGTGAACGCACAAAGAGCTCTGCTCAGCACTCCTTGTAGATA
CCCATCGCAGGACAAAGGCAAAGCTCGAAACGCTTCTGGCAGCATTTTCA
AAGGATAAAAAGGAATTCTCACAAAAACCCAGGAAAGATGCATGCCAGAT
TTGCGGATCCCGAGCCAGCGTCTCCGGACAGCGTTGATGGAATCGAAACG
GAGTCACTGGAGGCGCGGATTGAGGCCTTCAAGCAAAATCCCCAGAACAT
GGCCGCGTTGCGGGAGGCGCTCGACGATGTGCTCCTGCGGGCTGAGACGG
AGGCGAACAGGCGGGCAGTTGAGAGCCAGAAATCGCAACAGGGCAAGGAA
AAACGACCGAATTTTAAGAACGGCAAGGTGGTGAATCGCGCTCGAGGATT
CGTGGTGCGGATCTTCGATGCCATATGCAATTGCGCCAACAACAATGCGG
CGGCGGCCACGACGCGTTTCAAGCTGAGAAGCAACAGCGGCGGAGGGGGA
GGCGGCGGAGGTGGTGGTGGCGGAGCCAGCGGAAATGGCAAGCGTCAGCA
GTCGCAGAATGAGCCGGAAACCCTAGTCCTGACCAAGAAGAAGCCCGCCG
GCGAAGGCAAGAAAAAGAAGGGAGTCAGCATGGCCGATGACGTTCAAGCC
GGCGTTCGACTGATGGACTAAGCTAGCTATAATGGACAATGGTTGTCCAT
GCAATGGGAAAACATAATCAAAATTACCACCAACCCCTTCCTGAACAATG
AACTCTTACTCAGCAATCGTCTACTGTCATCTTACCACCTTAATGGATCC
TGTCCAGAAGCATTTTCTTCGCTCAAACGTCTTAGGCACAAACCAAATTC
TACGTCTTCCCCTTGAAGACCACCAAGTTTATGGTGTAAGCCCTGCAAAG
GAATCTTAAAATCGCATAGAACAGGGCTGATGGAAAAGCTTTAGCTCTCT
ACTATATTGTTTGATATACCCAAATGTGATCCCAGATCGTAATGTTAACG
AAAACTCAACTCGAAGCACAAGCAACTCTTCTAGGCTAGTTATGAAAGGA
GAAAACCCCTATATACGACATTTGTATACACTCTCCAGCTCTCAGACATT
ATTTGGTCCCCACGCACAACACAATCAACGGCATTACACAATCCCAGTGG
AATCGACGAGGGTTTGCCCCGAATCTCCACCTAATTATAACTACGATATA
TCAAATTATATACCTAACTATATGTGTATGTGTATGACTATAGTTGTCTA
CGGAACCACCAACCTATTTAGATGTGTGTGTGTAGCAGTTAAAAGTATTT
CCAAACCAAACCAAAGCAGCTAACAACAAACGGTTCAATATACAAGCATT
AATGTGTACTGATTTTATATACAATGTACTAACTACTATATATACGTGTG
AATGTCATTAGACTCTTAGTTGTTTACACAGGTTTCCTCGAACATCCTCA
TCAAATTCATCAACTAATCCGCACACACGCTCTAATCGGATATATTTTTG
TGAGACCCTTTTTGGAGAGATCTACATACATATATAAAGACACTACTCCT
ATACCGAAACCGAAATTTAAGATATCGATTACTCTCGATTACAGAGAACT
TTGTACGCAGATTTGCAAGGCAACCATTTTGTATAAGATTTGCATTTATT
TTGTAACCTCTTGAATGCAAAGATCTCCCTAAGTTTGAATGCATTGCTAA
GCCAATTGGATGTTTATCGATTACAAAATGTATAAGTATGCGTTATGCAA
ACATAAAACCGTTGTATTTAGTTAATAATATCAGCAATAAACTATAACAT
GTTTGAAATCAAAAAAAAAAAAAAA

RH51268.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:12:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG9368-RB 1869 CG9368-RB 57..1868 1..1812 9060 100 Plus
CG9368-RA 1884 CG9368-RA 432..1883 361..1812 7260 100 Plus
CG9368-RC 2425 CG9368-RC 976..2425 361..1810 7250 100 Plus
CG9368-RA 1884 CG9368-RA 57..420 1..364 1805 99.7 Plus
CG9368-RC 2425 CG9368-RC 6..365 1..360 1800 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:35:06
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 19592052..19593501 361..1810 7145 99.5 Plus
chr3L 24539361 chr3L 19591017..19591358 1..342 1710 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:32:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:35:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19602671..19604122 361..1812 7260 100 Plus
3L 28110227 3L 19601636..19601977 1..342 1710 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:42:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 19595771..19597222 361..1812 7260 100 Plus
3L 28103327 3L 19594736..19595077 1..342 1710 100 Plus
Blast to na_te.dros performed on 2019-03-15 20:35:05 has no hits.

RH51268.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:36:06 Download gff for RH51268.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 19591017..19591357 1..341 100 -> Plus
chr3L 19591423..19591441 342..360 100 -> Plus
chr3L 19592052..19593501 361..1810 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:48:59 Download gff for RH51268.complete
Subject Subject Range Query Range Percent Splice Strand
CG9368-RB 1..534 138..671 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:57:47 Download gff for RH51268.complete
Subject Subject Range Query Range Percent Splice Strand
CG9368-RB 1..534 138..671 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:16:13 Download gff for RH51268.complete
Subject Subject Range Query Range Percent Splice Strand
CG9368-RB 1..534 138..671 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:51:07 Download gff for RH51268.complete
Subject Subject Range Query Range Percent Splice Strand
CG9368-RB 1..534 138..671 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:24:40 Download gff for RH51268.complete
Subject Subject Range Query Range Percent Splice Strand
CG9368-RB 1..534 138..671 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:37:49 Download gff for RH51268.complete
Subject Subject Range Query Range Percent Splice Strand
CG9368-RB 1..1810 1..1810 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:57:47 Download gff for RH51268.complete
Subject Subject Range Query Range Percent Splice Strand
CG9368-RB 1..1810 1..1810 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:16:13 Download gff for RH51268.complete
Subject Subject Range Query Range Percent Splice Strand
CG9368-RB 4..1813 1..1810 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:51:07 Download gff for RH51268.complete
Subject Subject Range Query Range Percent Splice Strand
CG9368-RB 1..1810 1..1810 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:24:40 Download gff for RH51268.complete
Subject Subject Range Query Range Percent Splice Strand
CG9368-RB 4..1813 1..1810 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:36:06 Download gff for RH51268.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19601636..19601976 1..341 100 -> Plus
3L 19602042..19602060 342..360 100 -> Plus
3L 19602671..19604120 361..1810 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:36:06 Download gff for RH51268.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19601636..19601976 1..341 100 -> Plus
3L 19602042..19602060 342..360 100 -> Plus
3L 19602671..19604120 361..1810 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:36:06 Download gff for RH51268.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19601636..19601976 1..341 100 -> Plus
3L 19602042..19602060 342..360 100 -> Plus
3L 19602671..19604120 361..1810 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:16:13 Download gff for RH51268.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19594736..19595076 1..341 100 -> Plus
arm_3L 19595142..19595160 342..360 100 -> Plus
arm_3L 19595771..19597220 361..1810 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:23:05 Download gff for RH51268.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19594736..19595076 1..341 100 -> Plus
3L 19595142..19595160 342..360 100 -> Plus
3L 19595771..19597220 361..1810 100   Plus

RH51268.pep Sequence

Translation from 137 to 670

> RH51268.pep
MHARFADPEPASPDSVDGIETESLEARIEAFKQNPQNMAALREALDDVLL
RAETEANRRAVESQKSQQGKEKRPNFKNGKVVNRARGFVVRIFDAICNCA
NNNAAAATTRFKLRSNSGGGGGGGGGGGGASGNGKRQQSQNEPETLVLTK
KKPAGEGKKKKGVSMADDVQAGVRLMD*

RH51268.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:02:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23709-PA 177 GF23709-PA 1..177 1..177 659 84.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:02:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16047-PA 181 GG16047-PA 1..181 1..177 876 95 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:02:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16938-PA 174 GH16938-PA 1..174 1..177 597 73.2 Plus
Dgri\GH23894-PA 103 GH23894-PA 9..103 75..177 315 75 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:29:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG9368-PB 177 CG9368-PB 1..177 1..177 904 100 Plus
CG9368-PA 182 CG9368-PA 1..182 1..177 883 96.7 Plus
CG9368-PD 87 CG9368-PD 1..75 1..75 370 98.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:02:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11799-PA 173 GI11799-PA 1..173 1..177 596 78.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:02:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20946-PA 176 GL20946-PA 1..176 1..177 614 84.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:02:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21735-PA 176 GA21735-PA 1..176 1..177 614 84.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:02:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19607-PA 172 GM19607-PA 1..172 1..177 865 96 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:02:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14816-PA 193 GD14816-PA 1..193 1..177 673 84.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:02:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13503-PA 169 GJ13503-PA 1..169 1..177 613 77.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:02:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19166-PA 178 GK19166-PA 1..178 1..177 426 69.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:02:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23212-PA 174 GE23212-PA 1..174 1..177 873 96.6 Plus
Dyak\GE19613-PA 174 GE19613-PA 1..174 1..177 873 96.6 Plus

RH51268.hyp Sequence

Translation from 137 to 670

> RH51268.hyp
MHARFADPEPASPDSVDGIETESLEARIEAFKQNPQNMAALREALDDVLL
RAETEANRRAVESQKSQQGKEKRPNFKNGKVVNRARGFVVRIFDAICNCA
NNNAAAATTRFKLRSNSGGGGGGGGGGGGASGNGKRQQSQNEPETLVLTK
KKPAGEGKKKKGVSMADDVQAGVRLMD*

RH51268.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:23:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG9368-PB 177 CG9368-PB 1..177 1..177 904 100 Plus
CG9368-PA 182 CG9368-PA 1..182 1..177 883 96.7 Plus
CG9368-PD 87 CG9368-PD 1..75 1..75 370 98.7 Plus