BDGP Sequence Production Resources |
Search the DGRC for RH51274
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 512 |
Well: | 74 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Pop2-RB |
Protein status: | RH51274.pep: gold |
Preliminary Size: | 1966 |
Sequenced Size: | 1802 |
Gene | Date | Evidence |
---|---|---|
CG5684 | 2002-10-17 | Blastp of sequenced clone |
CG5684 | 2003-01-01 | Sim4 clustering to Release 3 |
Pop2 | 2008-04-29 | Release 5.5 accounting |
Pop2 | 2008-08-15 | Release 5.9 accounting |
Pop2 | 2008-12-18 | 5.12 accounting |
1802 bp (1802 high quality bases) assembled on 2002-10-17
GenBank Submission: BT001837
> RH51274.complete GACTGCCGCAATCGCGAACAATTTTTTATTATGGCACTTGCGCGGCTCAC AAACGATATTCGCTGATAAACATTCATTGGAAATTATTGCCGAACGCAGA GGACTCCGCCAATTGAAGTGTGCGCTTAAAACGATCGCCGTGCAGGAAGC GGAAGTGCCCCATAACAGCTATTTTCTCGCCGCTTTCTCCCCCATCACCC CCCCGCAAAACAAGCGACGCCGATAGAAACATTTAATTTGTGCAAATAGC CGAAACCTACACGGTCGGCCATCAAATATTATGAAATGGGAGCATTGATC CCCCGAATCAGAGCTTAAGACCACACATCCAGGTGGAACTTGTTGCTTGA GGCTTGGTTGTAGGTCAGTGCGAAGAGGTGGCTGATCCGGCGGCGAAGGG TGCGCACCAGGCGACGTCCGGCGACGATACAATGCCCTCGGCCATCAGTG GCGCGCCACATGCCCACATACCCAGCAACGAGGAGTGCGGCATCCGCGAT GTGTGGAAGCAAAACCTGGAGGAGGAGTTCCGCACCATACGGAAAGTGGT GCAGAAGTACCACTATGTGGCCATGGACACCGAGTTTCCAGGCGTGGTAG CACGTCCAGTCGGCGAGTTCCGCTCCACGGCGGACTATCATTACCAGCTG CTGCGCTGTAATGTCGATCTGCTGCGGATTATCCAATTGGGCCTTACCTT CATGGACGACGATGGAAAGACACCACCCGGCTACTCCACCTGGCAGTTCA ACTTCAAGTTTAACCTGAGCGAGGACATGTATGCGCAGGACTCGATCGAT CTGCTGCAGAACTCCGGAATTCAGTTCAAGAAGCACGAGGAGGATGGCAT CGATCCCATCGACTTCGCCGAACTGCTGATGAGCTCTGGCATCGTGCTGG TGGAAAACATCAAGTGGCTGTGCTTCCACTCCGGCTACGATTTTGGCTAC CTTCTAAAGCTGCTCACCGATCAGAACCTGCCCCCGGACGAATCTGAATT TTTCGATCTGCTGCACATCTACTTTCCCAACATCTTCGACATCAAGTATC TGATGAAGTCGTGCAAGAACCTGAAAGGCGGCCTGCAGGAGGTTGCCGAT CAGCTGGAACTGCGGCGCGTGGGCCCCCAGCATCAGGCCGGCTCGGATGC TCTGCTGACGGGCATGGCCTTCTTCAAAATGCGTGAGATGTTCTTCGAGG ACAACATCGACCATGCGAAGTACTCCGGACACCTGTACGGCCTGGGTACC TCCTTCATCGTCAATGGCACCAACTTCCACGACAGCAACGGTGAGACGAA CAGCGCTTCATGATTCGTACTGATGGGGAACGTGGTCGTGCACGACAGGA AGTTCGAGCAGGAGGAATCACCGGGTCCGTCGGCATCTGTGCAGGCCACA CCACCTGGCCAACTGATCCTAGCCGTAACAACACCATTGCAGTAATCTGT GGACAGTCGACACAGATCGTTCCCATTTGTGAACAATTATACCCCGTTGG CCATAAAGCTAACTTCTTGATGTTTCCCACGCAAATTCAGATGAATAGGC AACCGTTCAATACGAAAACATGGCATAAACTAATTGTAAATCGCATAGAA ATGAAAAACCGGCAAAACTAAAATAGATTCAATTTCAAGTTCTGCATGTC TTAAATGTGTTACGAATACAAAACTAAGGTATGTAAAATTAAGCTAAAAC TGTAAGCCAATGAGCGAAACAGAGAATATTGTGTATTTGTAAAAAGAGCA AAAAAACAATATATTTAAAACTTTTTAATTTAGTGTAAAAAAAAAAAAAA AA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Pop2-RC | 1866 | Pop2-RC | 78..1863 | 2..1787 | 8915 | 99.9 | Plus |
Pop2-RB | 1895 | Pop2-RB | 394..1892 | 289..1787 | 7480 | 99.9 | Plus |
Pop2.a | 1949 | Pop2.a | 448..1946 | 289..1787 | 7480 | 99.9 | Plus |
Pop2-RB | 1895 | Pop2-RB | 41..333 | 2..294 | 1450 | 99.6 | Plus |
Pop2.a | 1949 | Pop2.a | 30..317 | 2..289 | 1440 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 11989201..11989801 | 1786..1186 | 2960 | 99.5 | Minus |
chr3L | 24539361 | chr3L | 11991076..11991495 | 1187..768 | 2100 | 100 | Minus |
chr3L | 24539361 | chr3L | 11991553..11991893 | 769..429 | 1705 | 100 | Minus |
chr3L | 24539361 | chr3L | 11993385..11993673 | 290..2 | 1430 | 99.7 | Minus |
chr3L | 24539361 | chr3L | 11992530..11992669 | 428..289 | 700 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 11998397..11998998 | 1787..1186 | 2995 | 99.8 | Minus |
3L | 28110227 | 3L | 12000273..12000692 | 1187..768 | 2100 | 100 | Minus |
3L | 28110227 | 3L | 12000750..12001090 | 769..429 | 1705 | 100 | Minus |
3L | 28110227 | 3L | 12002585..12002873 | 290..2 | 1445 | 100 | Minus |
3L | 28110227 | 3L | 12001727..12001866 | 428..289 | 700 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 11991497..11992098 | 1787..1186 | 2995 | 99.8 | Minus |
3L | 28103327 | 3L | 11993373..11993792 | 1187..768 | 2100 | 100 | Minus |
3L | 28103327 | 3L | 11993850..11994190 | 769..429 | 1705 | 100 | Minus |
3L | 28103327 | 3L | 11995685..11995973 | 290..2 | 1445 | 100 | Minus |
3L | 28103327 | 3L | 11994827..11994966 | 428..289 | 700 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\Paris | 1730 | Dvir\Paris TV1 1730bp Derived from Z49253. | 1464..1580 | 1701..1578 | 125 | 61.6 | Minus |
Dvir\Paris | 1730 | Dvir\Paris TV1 1730bp Derived from Z49253. | 151..197 | 1578..1624 | 118 | 72.3 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 11991076..11991493 | 770..1187 | 100 | <- | Minus |
chr3L | 11989201..11989799 | 1188..1786 | 99 | <- | Minus |
chr3L | 11991553..11991893 | 429..769 | 100 | <- | Minus |
chr3L | 11992530..11992668 | 290..428 | 100 | <- | Minus |
chr3L | 11993386..11993673 | 1..289 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pop2-RA | 10..894 | 429..1313 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pop2-RA | 10..894 | 429..1313 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pop2-RA | 10..894 | 429..1313 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pop2-RA | 10..894 | 429..1313 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pop2-RA | 10..894 | 429..1313 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pop2-RC | 40..1825 | 1..1786 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pop2-RC | 40..1825 | 1..1786 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pop2-RC | 42..1827 | 1..1786 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pop2-RC | 40..1825 | 1..1786 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pop2-RC | 42..1827 | 1..1786 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 11998398..11998996 | 1188..1786 | 99 | <- | Minus |
3L | 12000273..12000690 | 770..1187 | 100 | <- | Minus |
3L | 12000750..12001090 | 429..769 | 100 | <- | Minus |
3L | 12001727..12001865 | 290..428 | 100 | <- | Minus |
3L | 12002586..12002873 | 1..289 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 11998398..11998996 | 1188..1786 | 99 | <- | Minus |
3L | 12000273..12000690 | 770..1187 | 100 | <- | Minus |
3L | 12000750..12001090 | 429..769 | 100 | <- | Minus |
3L | 12001727..12001865 | 290..428 | 100 | <- | Minus |
3L | 12002586..12002873 | 1..289 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 11998398..11998996 | 1188..1786 | 99 | <- | Minus |
3L | 12000273..12000690 | 770..1187 | 100 | <- | Minus |
3L | 12000750..12001090 | 429..769 | 100 | <- | Minus |
3L | 12001727..12001865 | 290..428 | 100 | <- | Minus |
3L | 12002586..12002873 | 1..289 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 11991498..11992096 | 1188..1786 | 99 | <- | Minus |
arm_3L | 11993373..11993790 | 770..1187 | 100 | <- | Minus |
arm_3L | 11993850..11994190 | 429..769 | 100 | <- | Minus |
arm_3L | 11994827..11994965 | 290..428 | 100 | <- | Minus |
arm_3L | 11995686..11995973 | 1..289 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 11991498..11992096 | 1188..1786 | 99 | <- | Minus |
3L | 11993373..11993790 | 770..1187 | 100 | <- | Minus |
3L | 11993850..11994190 | 429..769 | 100 | <- | Minus |
3L | 11994827..11994965 | 290..428 | 100 | <- | Minus |
3L | 11995686..11995973 | 1..289 | 99 | Minus |
Translation from 431 to 1312
> RH51274.pep MPSAISGAPHAHIPSNEECGIRDVWKQNLEEEFRTIRKVVQKYHYVAMDT EFPGVVARPVGEFRSTADYHYQLLRCNVDLLRIIQLGLTFMDDDGKTPPG YSTWQFNFKFNLSEDMYAQDSIDLLQNSGIQFKKHEEDGIDPIDFAELLM SSGIVLVENIKWLCFHSGYDFGYLLKLLTDQNLPPDESEFFDLLHIYFPN IFDIKYLMKSCKNLKGGLQEVADQLELRRVGPQHQAGSDALLTGMAFFKM REMFFEDNIDHAKYSGHLYGLGTSFIVNGTNFHDSNGETNSAS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10398-PA | 296 | GF10398-PA | 2..296 | 1..293 | 1518 | 95.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13860-PA | 297 | GG13860-PA | 5..297 | 1..293 | 1543 | 97.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16922-PA | 324 | GH16922-PA | 30..324 | 1..293 | 1510 | 94.6 | Plus |
Dgri\GH12756-PA | 265 | GH12756-PA | 5..244 | 14..253 | 1064 | 82.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Pop2-PB | 293 | CG5684-PB | 1..293 | 1..293 | 1568 | 100 | Plus |
Pop2-PA | 297 | CG5684-PA | 5..297 | 1..293 | 1568 | 100 | Plus |
Pop2-PC | 293 | CG5684-PC | 1..293 | 1..293 | 1568 | 100 | Plus |
Pop2-PE | 361 | CG5684-PE | 5..257 | 1..253 | 1346 | 99.6 | Plus |
Pop2-PD | 357 | CG5684-PD | 1..253 | 1..253 | 1346 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13677-PA | 324 | GI13677-PA | 30..324 | 1..293 | 1522 | 95.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17886-PA | 295 | GL17886-PA | 1..295 | 1..293 | 1514 | 95.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19054-PA | 295 | GA19054-PA | 1..295 | 1..293 | 1514 | 95.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24684-PA | 38 | GM24684-PA | 1..38 | 245..293 | 173 | 75.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12753-PA | 152 | GD12753-PA | 5..137 | 1..133 | 730 | 100 | Plus |
Dsim\GD12039-PA | 208 | GD12039-PA | 1..117 | 150..267 | 560 | 89.8 | Plus |
Dsim\GD12754-PA | 220 | GD12754-PA | 1..104 | 150..253 | 558 | 99 | Plus |
Dsim\GD12754-PA | 220 | GD12754-PA | 180..220 | 253..293 | 213 | 97.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14014-PA | 324 | GJ14014-PA | 30..324 | 1..293 | 1512 | 94.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17222-PA | 295 | GK17222-PA | 1..295 | 1..293 | 1507 | 94.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE20153-PA | 297 | GE20153-PA | 5..297 | 1..293 | 1543 | 97.3 | Plus |
Translation from 431 to 1312
> RH51274.hyp MPSAISGAPHAHIPSNEECGIRDVWKQNLEEEFRTIRKVVQKYHYVAMDT EFPGVVARPVGEFRSTADYHYQLLRCNVDLLRIIQLGLTFMDDDGKTPPG YSTWQFNFKFNLSEDMYAQDSIDLLQNSGIQFKKHEEDGIDPIDFAELLM SSGIVLVENIKWLCFHSGYDFGYLLKLLTDQNLPPDESEFFDLLHIYFPN IFDIKYLMKSCKNLKGGLQEVADQLELRRVGPQHQAGSDALLTGMAFFKM REMFFEDNIDHAKYSGHLYGLGTSFIVNGTNFHDSNGETNSAS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Pop2-PB | 293 | CG5684-PB | 1..293 | 1..293 | 1568 | 100 | Plus |
Pop2-PC | 293 | CG5684-PC | 1..293 | 1..293 | 1568 | 100 | Plus |
Pop2-PA | 297 | CG5684-PA | 5..297 | 1..293 | 1568 | 100 | Plus |
Pop2-PD | 357 | CG5684-PD | 1..253 | 1..253 | 1346 | 99.6 | Plus |
Pop2-PE | 361 | CG5684-PE | 5..257 | 1..253 | 1346 | 99.6 | Plus |