Clone RH51312 Report

Search the DGRC for RH51312

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:513
Well:12
Vector:pFlc-1
Associated Gene/TranscriptCG10257-RA
Protein status:RH51312.pep: gold
Preliminary Size:654
Sequenced Size:1180

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10257 2002-01-01 Sim4 clustering to Release 2
CG10257 2002-03-28 Blastp of sequenced clone
CG10257 2003-01-01 Sim4 clustering to Release 3
CG10257 2008-04-29 Release 5.5 accounting
CG10257 2008-08-15 Release 5.9 accounting
CG10257 2008-12-18 5.12 accounting

Clone Sequence Records

RH51312.complete Sequence

1180 bp (1180 high quality bases) assembled on 2002-03-28

GenBank Submission: AY094933

> RH51312.complete
GAGTGTGCCATTGGCGCTAACAACGTGCGGTTCGGTCTTGGGTTTTCTCG
CCGCCCGTTGAATTCAGAGAGCGGAATAGATTCTAGCCCGATTTCGGGGT
CTAAGCCCACAAACATAGGGGTGGAGTGAAAGTGCATTGCAGCCAGATCT
GCAGATTAGACAAACTTGAGTTCCTTGAACTTCCCAAATATTATAGATAT
ATTATACCTACGTGGTTTTCTCTGGTTTTGTGTAACCCATTTAGTTGGCT
GCACTTTAAAGGCGATTACTATAAATATTAATAGGATTTATTGATTGACT
GGCGGTGGGCCAGAGCCAGATCGACACGAGGCTTCGGACCCATGTCCTTT
CTTTCGCCCACACTGCGCCTGGAGAATCTGTCCACGCAGCCCACGATGAC
GCAGGATCATGTGCCCGAGGACCAGCGCTATAACAAACAGAATATTGTGG
CTCAATGGTGTGTGCCCATCAATGGCAAGATGTACCGCATCGAGCTGGAA
CATGGCACAACCAGTGGGCGGCGCATGATTTGGGTCAATGGACGGGAAGT
CCTGCGTCGCGACTGGATGTTCAAACTGGTTGGCGAAGACACCTTTCACA
TCGATCAGACGCGCTGCATCATACGCGTTGATCCTGCGCCGGGCTTCAAA
TACGAGTACTCCCTCTACATCGACGGCAAATCGCACGACCAGTACACCGA
GGACATGACACGGCAATATCGACTGTGGCTATATACGGATGATGCGGCCG
CCGATGCGCCGCAGGAATATAGAATAATGCTCAAACTGGACACGCTGAGT
CTCTACGTAAACGATGAGCTGCGCACCGAGGAGTCGGTTTTTGTTCACGG
CGGCACAGACACCAAGTTCCTGCTGCAGGACACGGAATTCGTGCTTCAGG
CACGCTCAAGTGGCAATAAACATGATGGCATCGTTCACACTCTGCTGGCG
AATGGGGTGGCAGTTCCGGAGGCGAAGATTCAGGAGATTATGCAAGAGCC
GGTCTCCATTTTGCAGAGCAGCAACTGAGGGGCAATGGAAGGCTCCTCCA
TACGATACGATAGGATAACGTTTTGCATTTGTTGAATTTGTGCCCAGTTG
TTAATAAACGTTTTTCGAAAGTTCTTTTCAATTTGATTAAAACATAAACT
TTGTCTTATACAATAAAAAAAAAAAAAAAA

RH51312.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:18:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG10257.a 1579 CG10257.a 417..1579 2..1164 5815 100 Plus
CG10257-RA 1250 CG10257-RA 88..1250 2..1164 5815 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:41:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 10829889..10830364 2..479 2265 99.2 Plus
chr2R 21145070 chr2R 10831411..10831743 832..1164 1665 100 Plus
chr2R 21145070 chr2R 10831044..10831332 545..833 1445 100 Plus
chr2R 21145070 chr2R 10830471..10830539 478..546 345 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:32:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:41:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14942612..14943089 2..479 2390 100 Plus
2R 25286936 2R 14944137..14944470 832..1165 1670 100 Plus
2R 25286936 2R 14943770..14944058 545..833 1445 100 Plus
2R 25286936 2R 14943197..14943265 478..546 345 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:48:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 14943811..14944288 2..479 2390 100 Plus
2R 25260384 2R 14945336..14945669 832..1165 1670 100 Plus
2R 25260384 2R 14944969..14945257 545..833 1445 100 Plus
2R 25260384 2R 14944396..14944464 478..546 345 100 Plus
Blast to na_te.dros performed on 2019-03-16 07:41:36 has no hits.

RH51312.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:42:24 Download gff for RH51312.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 10829888..10830364 1..479 98 -> Plus
chr2R 10830473..10830538 480..545 100 -> Plus
chr2R 10831045..10831332 546..833 100 -> Plus
chr2R 10831413..10831743 834..1164 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:49:01 Download gff for RH51312.complete
Subject Subject Range Query Range Percent Splice Strand
CG10257-RA 1..687 342..1028 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:22:16 Download gff for RH51312.complete
Subject Subject Range Query Range Percent Splice Strand
CG10257-RA 1..687 342..1028 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:46:20 Download gff for RH51312.complete
Subject Subject Range Query Range Percent Splice Strand
CG10257-RA 1..687 342..1028 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:59:04 Download gff for RH51312.complete
Subject Subject Range Query Range Percent Splice Strand
CG10257-RA 1..687 342..1028 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:36:34 Download gff for RH51312.complete
Subject Subject Range Query Range Percent Splice Strand
CG10257-RA 1..687 342..1028 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:49:14 Download gff for RH51312.complete
Subject Subject Range Query Range Percent Splice Strand
CG10257-RA 2..1164 2..1164 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:22:16 Download gff for RH51312.complete
Subject Subject Range Query Range Percent Splice Strand
CG10257-RA 2..1164 2..1164 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:46:20 Download gff for RH51312.complete
Subject Subject Range Query Range Percent Splice Strand
CG10257-RA 214..1377 1..1164 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:59:04 Download gff for RH51312.complete
Subject Subject Range Query Range Percent Splice Strand
CG10257-RA 2..1161 2..1161 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:36:34 Download gff for RH51312.complete
Subject Subject Range Query Range Percent Splice Strand
CG10257-RA 214..1377 1..1164 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:42:24 Download gff for RH51312.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14942611..14943089 1..479 99 -> Plus
2R 14943199..14943264 480..545 100 -> Plus
2R 14943771..14944058 546..833 100 -> Plus
2R 14944139..14944469 834..1164 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:42:24 Download gff for RH51312.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14942611..14943089 1..479 99 -> Plus
2R 14943199..14943264 480..545 100 -> Plus
2R 14943771..14944058 546..833 100 -> Plus
2R 14944139..14944469 834..1164 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:42:24 Download gff for RH51312.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14942611..14943089 1..479 99 -> Plus
2R 14943199..14943264 480..545 100 -> Plus
2R 14943771..14944058 546..833 100 -> Plus
2R 14944139..14944469 834..1164 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:46:20 Download gff for RH51312.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10830704..10830769 480..545 100 -> Plus
arm_2R 10831276..10831563 546..833 100 -> Plus
arm_2R 10831644..10831974 834..1164 100   Plus
arm_2R 10830116..10830594 1..479 99 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:31:47 Download gff for RH51312.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14943810..14944288 1..479 99 -> Plus
2R 14944398..14944463 480..545 100 -> Plus
2R 14944970..14945257 546..833 100 -> Plus
2R 14945338..14945668 834..1164 100   Plus

RH51312.hyp Sequence

Translation from 341 to 1027

> RH51312.hyp
MSFLSPTLRLENLSTQPTMTQDHVPEDQRYNKQNIVAQWCVPINGKMYRI
ELEHGTTSGRRMIWVNGREVLRRDWMFKLVGEDTFHIDQTRCIIRVDPAP
GFKYEYSLYIDGKSHDQYTEDMTRQYRLWLYTDDAAADAPQEYRIMLKLD
TLSLYVNDELRTEESVFVHGGTDTKFLLQDTEFVLQARSSGNKHDGIVHT
LLANGVAVPEAKIQEIMQEPVSILQSSN*

RH51312.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG10257-PA 228 CG10257-PA 1..228 1..228 1204 100 Plus

RH51312.pep Sequence

Translation from 341 to 1027

> RH51312.pep
MSFLSPTLRLENLSTQPTMTQDHVPEDQRYNKQNIVAQWCVPINGKMYRI
ELEHGTTSGRRMIWVNGREVLRRDWMFKLVGEDTFHIDQTRCIIRVDPAP
GFKYEYSLYIDGKSHDQYTEDMTRQYRLWLYTDDAAADAPQEYRIMLKLD
TLSLYVNDELRTEESVFVHGGTDTKFLLQDTEFVLQARSSGNKHDGIVHT
LLANGVAVPEAKIQEIMQEPVSILQSSN*

RH51312.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:04:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12307-PA 227 GF12307-PA 1..227 1..227 1174 94.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:04:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20493-PA 228 GG20493-PA 1..228 1..228 1221 98.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:04:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21105-PA 232 GH21105-PA 1..232 1..227 1052 83.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:17:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG10257-PA 228 CG10257-PA 1..228 1..228 1204 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:04:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18707-PA 238 GI18707-PA 1..238 1..227 1033 81.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:04:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10380-PA 203 GL10380-PA 1..203 1..227 1004 84.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:04:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10198-PA 230 GA10198-PA 1..230 1..227 1124 90.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:04:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21585-PA 228 GM21585-PA 1..228 1..228 1220 98.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:04:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11091-PA 207 GD11091-PA 1..207 1..228 1069 89.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:04:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21727-PA 231 GJ21727-PA 1..231 1..227 1038 83.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:04:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21519-PA 222 GK21519-PA 1..222 1..227 1057 86.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:04:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13625-PA 228 GE13625-PA 1..228 1..228 1209 97.8 Plus