Clone RH51528 Report

Search the DGRC for RH51528

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:515
Well:28
Vector:pFlc-1
Associated Gene/TranscriptCG34227-RA
Protein status:RH51528.pep: gold
Preliminary Size:452
Sequenced Size:508

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7738 2002-01-01 Sim4 clustering to Release 2
CG7738 2002-05-30 Blastp of sequenced clone
CG34227 2008-04-29 Release 5.5 accounting
CG34227 2008-08-15 Release 5.9 accounting
CG34227 2008-12-18 5.12 accounting

Clone Sequence Records

RH51528.complete Sequence

508 bp (508 high quality bases) assembled on 2002-05-30

GenBank Submission: AY118438

> RH51528.complete
GATCAGTTGCACGAGTCTGTCGAGTCTGTATCAGCAACCCATTGAATCAA
GCAGAAACCAAGATGCGTCTAACACTTCTGGCCCTCATCGGTGTCCTGTG
CCTGGCATGTGCCTACGCCTTGGATGATTCTGAAAACAACGATCAGGTGG
TTGGACTCCTGGACGTCGCCGATCAGGGAGCGAACCATGCCAACGATGGA
GCCCGAGAGGCCCGCCAGCTCGGAGGATGGGGCGGTGGATGGGGTGGTCG
TGGAGGATGGGGCGGCCGTGGAGGATGGGGCGGCCGTGGTGGATGGGGTG
GCCGTGGAGGATGGGGTGGAGGATGGGGCGGTCGAGGAGGTTGGGGAGGT
CGCGGAGGTGGTTGGTATGGCCGATAGAACGGCTGACGTCGCTGACCACG
CCTCCGACCAATCCCACCACTTGCCAAGTCAGAAGGATACCCTGTCACCA
ATGTCATGGCGTGAATAAAGTACTTTGGAGCAATTAAAAAAAAGAAAAAA
AAAAAAAA

RH51528.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:39:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG34227-RA 487 CG34227-RA 2..487 2..487 2415 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:41:55
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 7135590..7136076 2..488 2420 99.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:32:36 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:41:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11248127..11248613 2..488 2420 99.8 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:29:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 11249326..11249812 2..488 2420 99.7 Plus
Blast to na_te.dros performed on 2019-03-16 15:41:54 has no hits.

RH51528.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:43:05 Download gff for RH51528.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 7135589..7135816 1..228 99 == Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:49:06 Download gff for RH51528.complete
Subject Subject Range Query Range Percent Splice Strand
CG34227-RA 1..315 63..377 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:06:15 Download gff for RH51528.complete
Subject Subject Range Query Range Percent Splice Strand
CG34227-RA 1..315 63..377 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:16:28 Download gff for RH51528.complete
Subject Subject Range Query Range Percent Splice Strand
CG34227-RA 1..315 63..377 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:51:16 Download gff for RH51528.complete
Subject Subject Range Query Range Percent Splice Strand
CG34227-RA 1..315 63..377 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:46:37 Download gff for RH51528.complete
Subject Subject Range Query Range Percent Splice Strand
CG34227-RA 1..315 63..377 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:55:03 Download gff for RH51528.complete
Subject Subject Range Query Range Percent Splice Strand
CG34227-RA 2..487 2..487 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:06:15 Download gff for RH51528.complete
Subject Subject Range Query Range Percent Splice Strand
CG34227-RA 2..487 2..487 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:16:28 Download gff for RH51528.complete
Subject Subject Range Query Range Percent Splice Strand
CG34227-RA 2..485 2..485 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:51:16 Download gff for RH51528.complete
Subject Subject Range Query Range Percent Splice Strand
CG34227-RA 2..487 2..487 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:46:37 Download gff for RH51528.complete
Subject Subject Range Query Range Percent Splice Strand
CG34227-RA 2..485 2..485 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:43:05 Download gff for RH51528.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11248126..11248613 1..488 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:43:05 Download gff for RH51528.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11248126..11248613 1..488 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:43:05 Download gff for RH51528.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11248126..11248613 1..488 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:16:28 Download gff for RH51528.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7135631..7136118 1..488 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:26:03 Download gff for RH51528.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11249325..11249812 1..488 99   Plus

RH51528.hyp Sequence

Translation from 2 to 376

> RH51528.hyp
SVARVCRVCISNPLNQAESKMRLTLLALIGVLCLACAYALDDSENNDQVV
GLLDVADQGANHANDGAREARQLGGWGGGWGGRGGWGGRGGWGGRGGWGG
RGGWGGGWGGRGGWGGRGGGWYGR*

RH51528.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:20:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG34227-PA 104 CG34227-PA 1..104 21..124 612 100 Plus
CG12998-PB 113 CG12998-PB 55..113 74..122 177 50.8 Plus
CG12998-PA 113 CG12998-PA 55..113 74..122 177 50.8 Plus
CG12998-PB 113 CG12998-PB 35..98 75..121 176 45.3 Plus
CG12998-PA 113 CG12998-PA 35..98 75..121 176 45.3 Plus
Fib-PA 344 CG9888-PA 56..101 74..120 175 74.5 Plus
CG34225-PA 104 CG34225-PA 4..95 21..121 173 41.2 Plus

RH51528.pep Sequence

Translation from 62 to 376

> RH51528.pep
MRLTLLALIGVLCLACAYALDDSENNDQVVGLLDVADQGANHANDGAREA
RQLGGWGGGWGGRGGWGGRGGWGGRGGWGGRGGWGGGWGGRGGWGGRGGG
WYGR*

RH51528.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 15:33:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12535-PA 107 GF12535-PA 1..92 1..91 184 65.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 15:33:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20177-PA 102 GG20177-PA 1..52 1..52 260 96.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 15:33:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19946-PA 109 GH19946-PA 1..54 1..52 164 66.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:48:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG34227-PA 104 CG34227-PA 1..104 1..104 612 100 Plus
CG12998-PB 113 CG12998-PB 55..113 54..102 177 50.8 Plus
CG12998-PA 113 CG12998-PA 55..113 54..102 177 50.8 Plus
CG12998-PB 113 CG12998-PB 35..98 55..101 176 45.3 Plus
CG12998-PA 113 CG12998-PA 35..98 55..101 176 45.3 Plus
Fib-PA 344 CG9888-PA 56..101 54..100 175 74.5 Plus
CG34225-PA 104 CG34225-PA 4..95 1..101 173 41.2 Plus
Nopp140-PA 720 CG7421-PA 637..697 46..103 169 62.3 Plus
Nopp140-PE 773 CG7421-PE 690..750 46..103 169 62.3 Plus
Nopp140-PA 720 CG7421-PA 638..700 39..101 167 60 Plus
Nopp140-PE 773 CG7421-PE 691..753 39..101 167 60 Plus
Fib-PA 344 CG9888-PA 30..89 54..103 165 63.3 Plus
CG7299-PC 177 CG7299-PC 60..126 37..99 162 49.3 Plus
CG7299-PC 177 CG7299-PC 69..125 54..103 162 57.9 Plus
CG7299-PA 177 CG7299-PA 60..126 37..99 162 49.3 Plus
CG7299-PA 177 CG7299-PA 69..125 54..103 162 57.9 Plus
Fib-PA 344 CG9888-PA 49..99 54..103 160 71.2 Plus
CG8157-PB 113 CG8157-PB 23..76 54..104 160 55.6 Plus
CG8157-PA 113 CG8157-PA 23..76 54..104 160 55.6 Plus
CG9757-PB 127 CG9757-PB 5..116 12..103 160 44.2 Plus
CG9757-PA 127 CG9757-PA 5..116 12..103 160 44.2 Plus
caz-PD 355 CG3606-PD 160..210 50..100 160 60.8 Plus
caz-PC 384 CG3606-PC 189..239 50..100 160 60.8 Plus
Hrb87F-PE 385 CG12749-PE 241..316 36..101 160 48.1 Plus
Hrb87F-PD 385 CG12749-PD 241..316 36..101 160 48.1 Plus
Hrb87F-PC 385 CG12749-PC 241..316 36..101 160 48.1 Plus
Hrb87F-PA 385 CG12749-PA 241..316 36..101 160 48.1 Plus
caz-PB 399 CG3606-PB 204..254 50..100 160 60.8 Plus
CG8157-PB 113 CG8157-PB 32..98 38..103 159 52.2 Plus
CG8157-PA 113 CG8157-PA 32..98 38..103 159 52.2 Plus
CG4038-PA 237 CG4038-PA 163..234 46..104 159 58.3 Plus
CG8157-PB 113 CG8157-PB 29..82 54..100 158 57.4 Plus
CG8157-PA 113 CG8157-PA 29..82 54..100 158 57.4 Plus
CG5172-PD 172 CG5172-PD 59..118 39..103 157 50 Plus
Fib-PA 344 CG9888-PA 47..108 37..99 156 56.9 Plus
caz-PD 355 CG3606-PD 170..224 54..100 156 63.6 Plus
caz-PC 384 CG3606-PC 199..253 54..100 156 63.6 Plus
caz-PB 399 CG3606-PB 214..268 54..100 156 63.6 Plus
Top3alpha-PA 1250 CG10123-PA 776..837 39..98 155 50 Plus
Cpr47Ef-PD 601 CG13214-PD 356..425 39..100 154 52.1 Plus
Cpr47Ef-PC 612 CG13214-PC 356..425 39..100 154 52.1 Plus
CG7299-PC 177 CG7299-PC 52..102 54..99 153 60.8 Plus
CG7299-PA 177 CG7299-PA 52..102 54..99 153 60.8 Plus
CG4038-PA 237 CG4038-PA 11..57 54..100 153 70.8 Plus
CG11458-PA 98 CG11458-PA 21..92 39..104 153 47.2 Plus
Fib-PA 344 CG9888-PA 10..64 54..103 152 65.5 Plus
Fib-PA 344 CG9888-PA 16..75 54..103 151 60 Plus
CG13217-PA 113 CG13217-PA 1..100 1..99 151 38.2 Plus
CG11458-PA 98 CG11458-PA 21..94 54..103 150 47.3 Plus
Cpr47Ef-PD 601 CG13214-PD 312..362 55..100 150 61.5 Plus
Cpr47Ef-PC 612 CG13214-PC 312..362 55..100 150 61.5 Plus
Fib-PA 344 CG9888-PA 43..94 55..103 149 66 Plus
Fib-PA 344 CG9888-PA 13..69 54..103 149 63.8 Plus
CG8157-PB 113 CG8157-PB 59..112 52..104 149 55.6 Plus
CG8157-PA 113 CG8157-PA 59..112 52..104 149 55.6 Plus
Nopp140-PA 720 CG7421-PA 632..686 49..103 149 61.4 Plus
Nopp140-PE 773 CG7421-PE 685..739 49..103 149 61.4 Plus
Hrb87F-PE 385 CG12749-PE 195..295 34..103 149 36.6 Plus
Hrb87F-PD 385 CG12749-PD 195..295 34..103 149 36.6 Plus
Hrb87F-PC 385 CG12749-PC 195..295 34..103 149 36.6 Plus
Hrb87F-PA 385 CG12749-PA 195..295 34..103 149 36.6 Plus
CG13376-PC 193 CG13376-PC 27..97 54..101 149 49.3 Plus
CG13376-PB 200 CG13376-PB 34..104 54..101 149 49.3 Plus
CG13376-PD 204 CG13376-PD 38..108 54..101 149 49.3 Plus
Cpr47Ef-PD 601 CG13214-PD 29..91 40..100 149 54.7 Plus
Cpr47Ef-PC 612 CG13214-PC 29..91 40..100 149 54.7 Plus
Cpr47Ef-PC 612 CG13214-PC 439..484 57..100 149 65.2 Plus
CG9757-PB 127 CG9757-PB 75..126 54..103 148 62.3 Plus
CG9757-PA 127 CG9757-PA 75..126 54..103 148 62.3 Plus
CG4038-PA 237 CG4038-PA 175..237 39..101 148 50.8 Plus
CG11458-PA 98 CG11458-PA 30..98 38..101 148 52.2 Plus
CG9757-PB 127 CG9757-PB 82..127 54..103 147 66 Plus
CG9757-PA 127 CG9757-PA 82..127 54..103 147 66 Plus
Top3alpha-PA 1250 CG10123-PA 780..833 54..103 147 59.3 Plus
CG4038-PA 237 CG4038-PA 8..54 57..104 146 66.7 Plus
CG13376-PC 193 CG13376-PC 60..106 54..103 146 60 Plus
CG13376-PB 200 CG13376-PB 67..113 54..103 146 60 Plus
CG13376-PD 204 CG13376-PD 71..117 54..103 146 60 Plus
Cpr47Ef-PD 601 CG13214-PD 246..294 55..103 146 57.1 Plus
Cpr47Ef-PC 612 CG13214-PC 246..294 55..103 146 57.1 Plus
CG10918-PA 183 CG10918-PA 31..86 46..98 146 58.9 Plus
CG10597-PB 200 CG10597-PB 86..152 39..100 146 50.7 Plus
CG5172-PD 172 CG5172-PD 21..99 31..103 144 44.2 Plus
CG13376-PC 193 CG13376-PC 2..88 32..101 144 43.2 Plus
CG13376-PB 200 CG13376-PB 9..95 32..101 144 43.2 Plus
CG13376-PD 204 CG13376-PD 13..99 32..101 144 43.2 Plus
Cpr47Ef-PD 601 CG13214-PD 439..497 57..100 143 54.2 Plus
Cpr47Ef-PD 601 CG13214-PD 345..407 54..103 143 55.4 Plus
Cpr47Ef-PD 601 CG13214-PD 407..471 54..103 143 53 Plus
Cpr47Ef-PC 612 CG13214-PC 345..407 54..103 143 55.4 Plus
CG17105-PB 103 CG17105-PB 25..72 54..98 143 62.5 Plus
CG17105-PA 103 CG17105-PA 25..72 54..98 143 62.5 Plus
Cpr47Ef-PD 601 CG13214-PD 383..426 54..98 142 64.4 Plus
Cpr47Ef-PC 612 CG13214-PC 383..426 54..98 142 64.4 Plus
Top3alpha-PA 1250 CG10123-PA 755..835 20..100 142 41 Plus
CG10597-PB 200 CG10597-PB 93..159 39..101 142 47.8 Plus
CG5172-PC 106 CG5172-PC 21..92 31..100 142 44.3 Plus
CG9269-PA 146 CG9269-PA 57..115 54..104 142 50.8 Plus
CG4038-PA 237 CG4038-PA 10..59 46..98 141 62.3 Plus
Cpr47Ef-PD 601 CG13214-PD 58..112 54..100 141 54.5 Plus
Cpr47Ef-PD 601 CG13214-PD 230..295 33..99 141 44.8 Plus
Cpr47Ef-PC 612 CG13214-PC 58..112 54..100 141 54.5 Plus
Cpr47Ef-PC 612 CG13214-PC 230..295 33..99 141 44.8 Plus
CG10918-PA 183 CG10918-PA 23..84 46..99 141 59.7 Plus
CG10918-PA 183 CG10918-PA 62..107 54..97 141 58.7 Plus
CG14191-PA 193 CG14191-PA 91..137 54..100 141 55.3 Plus
TwdlT-PA 286 CG5812-PA 58..111 54..103 140 54.5 Plus
CG17108-PA 342 CG17108-PA 241..297 53..103 139 54.4 Plus
CG4038-PA 237 CG4038-PA 2..44 55..100 138 69.6 Plus
CG17105-PB 103 CG17105-PB 26..80 39..100 138 51.6 Plus
CG17105-PA 103 CG17105-PA 26..80 39..100 138 51.6 Plus
TwdlT-PA 286 CG5812-PA 76..124 55..103 138 57.1 Plus
CG5172-PD 172 CG5172-PD 61..121 39..103 136 47.7 Plus
CG5172-PD 172 CG5172-PD 84..158 54..103 135 45.3 Plus
CG13376-PC 193 CG13376-PC 45..131 30..101 135 39.1 Plus
CG13376-PB 200 CG13376-PB 52..138 30..101 135 39.1 Plus
CG13376-PD 204 CG13376-PD 56..142 30..101 135 39.1 Plus
CG5172-PC 106 CG5172-PC 24..68 58..103 135 58.7 Plus
CG5172-PC 106 CG5172-PC 26..84 54..103 135 50.8 Plus
CG7296-PB 161 CG7296-PB 69..118 55..104 135 54 Plus
CG7296-PA 161 CG7296-PA 69..118 55..104 135 54 Plus
CG14742-PA 74 CG14742-PA 6..49 57..100 131 59.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 15:33:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19902-PA 110 GI19902-PA 1..62 1..60 134 50 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 15:33:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17718-PA 103 GL17718-PA 1..84 1..88 133 64.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 15:33:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24890-PA 104 GA24890-PA 1..82 1..78 166 62.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 15:33:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21266-PA 104 GM21266-PA 1..104 1..104 219 76 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 15:33:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15071-PA 106 GJ15071-PA 1..54 1..54 136 53.7 Plus
Dvir\GJ15070-PA 101 GJ15070-PA 1..79 1..81 134 63 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 15:33:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20957-PA 110 GK20957-PA 1..53 1..50 148 60.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 15:33:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12866-PA 105 GE12866-PA 1..52 1..52 269 100 Plus