Clone RH51633 Report

Search the DGRC for RH51633

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:516
Well:33
Vector:pFlc-1
Associated Gene/TranscriptCG33129-RA
Protein status:RH51633.pep: gold
Preliminary Size:822
Sequenced Size:1561

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6087 2002-01-01 Sim4 clustering to Release 2
CG33129 2008-04-29 Release 5.5 accounting
CG33129 2008-08-15 Release 5.9 accounting
CG33129 2008-12-18 5.12 accounting

Clone Sequence Records

RH51633.complete Sequence

1561 bp (1561 high quality bases) assembled on 2006-01-17

GenBank Submission: BT024188

> RH51633.complete
GGTTTAAGTTAAGTGGTCTGGCTTAGTACATTACGTACTCTGGTCACATT
GCTTTAGTGAAAAGAAAAACGAAGCTGAGGAAATCTAGAAATACTCTTCA
TAATCGAAACTCATTGAAATTAAGTTAGAAAATGGCTCAGGTTAAACCGA
AAAGTAACAAACAGAGCGGCAAACCAGTGCCGGCCGCCAAAAAGAGCGTC
CAAGAGAAGAGCAGCGCGCAGCAGAAGAAGAACAAACAGAAGGCCGCGGC
AGAAAAAAAGAAATGCGGATGCTGCAAGTGGACCTTGGGTAGCATCTTCA
TCATCGCCCTGATTGCCGGAGCTCTGTACTACGATACCGAGGTGAACGGC
AAGGGCGTGTTCGAGAAATCGGCCACCGGCAAGGTGCTGAAAAATGCCGG
AGTCCTGCCGCATGTCCAGAAGTCCTGGTACACGGTCATGGGGGCCGGAG
CGCGGGGCTACAAGTGGGCGGAAGTGAATGTGCCGCCGTACGCCGAGCCG
GTGATCAAGACCACCTGTGACCTGTGGAAGCTGGCGAGGAATGCGGCCTG
CAACGCTTACCAGAACGGCAAGGGATACTTTGGCGCCAAATGGCCCGTTG
TGGCAAAGTTCATTGACCAATACGTGCCCAATTCGTCTGGCAAAATCGAA
GCTTTTGCCGCTGGCGTTAGCGATTTAGCCGCCAGCAGCTATGAAAAGGC
TGCAGCGCTCATCAAGGAAAAGGTGCTTGTTGGCCGTCTCTCGCCCGAGA
ACATCAATCAGGCGCTGAACCAGACGCGTAACGCCGCCCTGGAGTACTAC
AACCAGTTTCACAAAAAGGTCGACGCATACGCCAAGCTCAAATGATTTTA
AGCGTCAGGAACGCTTACTTCTCGAACAGCAACATCATCAGCAGCTGCAG
CAGATGCAAACAGAATACGCGTCATAGTAAATAGTGAAGGAAGCCCTAAT
TTTTCGCAAAAAGTTAAAAAACCGGAAAATGTTCTATAAGTCGAAACTCA
AGAAGTCATTCACATTTATCAACAACTTCTCGTCAAGTTTAATTAAGAAA
AAGCAATACGAGCAAATCTTTGTGGATGCCGATAGTACACTAACAATCTA
GTAAATTCAACCTCGATACTGATAAATTAGTGAAAGACACGAGAAATTTT
CTGTTGTAAAACATGTGTTTAAACATTTTTCTCCAAGTTGAGAAAACATT
ATTTTTAAATTCGTTTACAACGGCATGAGAGTTTTGTGAAAAGTTCTACC
ATTGAAATTTTGTAATTGTAATTATTAAAGTGCGTTTTTTGTGGCGATGC
GCGAAGTGTTAACTCTATTGTGTTAACTGAACTTAACAATTCCAACTGCA
TTTTGAAGGCAAACAATAGATTCAAATATTTTTATACTTTTATTCATAGT
TTTCTTGCATTTGTGTGTACATTTCTGTAGACTCCTCCCCAATACTTGCA
TAATAGCGCGATACTTTTGATTTGATTTTAAATCTCATTTGTATATTTAA
TGGAAAACACGATTTTGCATAAATAAAATAAAATTGAAAGATGCGAAAAA
AAAAAAAAAAA

RH51633.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:21:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG33129-RA 1607 CG33129-RA 1..1546 2..1547 7715 99.9 Plus
CG33129-RC 1714 CG33129-RC 204..1678 73..1547 7360 99.9 Plus
CG33129-RB 1542 CG33129-RB 70..1542 75..1547 7350 99.9 Plus
CG33129-RB 1542 CG33129-RB 1..40 35..74 200 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:55:13
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 10963662..10964474 1543..731 4065 100 Minus
chr2L 23010047 chr2L 10964748..10965166 611..193 2095 100 Minus
chr2L 23010047 chr2L 10965257..10965378 194..73 610 100 Minus
chr2L 23010047 chr2L 10964547..10964665 730..612 595 100 Minus
chr2L 23010047 chr2L 10966889..10966961 74..2 365 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:32:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:55:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10964903..10965719 1547..731 4070 99.9 Minus
2L 23513712 2L 10965993..10966411 611..193 2095 100 Minus
2L 23513712 2L 10966502..10966623 194..73 610 100 Minus
2L 23513712 2L 10965792..10965910 730..612 595 100 Minus
2L 23513712 2L 10968134..10968206 74..2 365 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:14:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10964903..10965719 1547..731 4070 99.8 Minus
2L 23513712 2L 10965993..10966411 611..193 2095 100 Minus
2L 23513712 2L 10966502..10966623 194..73 610 100 Minus
2L 23513712 2L 10965792..10965910 730..612 595 100 Minus
2L 23513712 2L 10968134..10968206 74..2 365 100 Minus
Blast to na_te.dros performed 2019-03-15 22:55:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2486..2519 876..909 125 85.3 Plus
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 879..1007 1493..1366 119 58.8 Minus

RH51633.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:55:55 Download gff for RH51633.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 10963660..10964474 731..1545 99 <- Minus
chr2L 10964547..10964665 612..730 100 <- Minus
chr2L 10964748..10965164 195..611 100 <- Minus
chr2L 10965257..10965376 75..194 100 <- Minus
chr2L 10966889..10966961 1..74 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:49:07 Download gff for RH51633.complete
Subject Subject Range Query Range Percent Splice Strand
CG33129-RC 1..714 132..845 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:38:37 Download gff for RH51633.complete
Subject Subject Range Query Range Percent Splice Strand
CG33129-RC 1..714 132..845 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:23:32 Download gff for RH51633.complete
Subject Subject Range Query Range Percent Splice Strand
CG33129-RC 1..714 132..845 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:13:42 Download gff for RH51633.complete
Subject Subject Range Query Range Percent Splice Strand
CG33129-RC 1..714 132..845 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:15:05 Download gff for RH51633.complete
Subject Subject Range Query Range Percent Splice Strand
CG33129-RC 1..714 132..845 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:10:35 Download gff for RH51633.complete
Subject Subject Range Query Range Percent Splice Strand
CG33129-RA 1..1544 2..1545 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:38:37 Download gff for RH51633.complete
Subject Subject Range Query Range Percent Splice Strand
CG33129-RA 1..1544 2..1545 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:23:32 Download gff for RH51633.complete
Subject Subject Range Query Range Percent Splice Strand
CG33129-RA 1..1504 42..1545 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:13:42 Download gff for RH51633.complete
Subject Subject Range Query Range Percent Splice Strand
CG33129-RA 1..1544 2..1545 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:15:05 Download gff for RH51633.complete
Subject Subject Range Query Range Percent Splice Strand
CG33129-RA 1..1504 42..1545 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:55:55 Download gff for RH51633.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10968134..10968206 1..74 98   Minus
2L 10965792..10965910 612..730 100 <- Minus
2L 10964905..10965719 731..1545 99 <- Minus
2L 10965993..10966409 195..611 100 <- Minus
2L 10966502..10966621 75..194 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:55:55 Download gff for RH51633.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10968134..10968206 1..74 98   Minus
2L 10965792..10965910 612..730 100 <- Minus
2L 10964905..10965719 731..1545 99 <- Minus
2L 10965993..10966409 195..611 100 <- Minus
2L 10966502..10966621 75..194 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:55:55 Download gff for RH51633.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10968134..10968206 1..74 98   Minus
2L 10965792..10965910 612..730 100 <- Minus
2L 10964905..10965719 731..1545 99 <- Minus
2L 10965993..10966409 195..611 100 <- Minus
2L 10966502..10966621 75..194 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:23:32 Download gff for RH51633.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10966502..10966621 75..194 100 <- Minus
arm_2L 10968134..10968206 1..74 98   Minus
arm_2L 10964905..10965719 731..1545 99 <- Minus
arm_2L 10965792..10965910 612..730 100 <- Minus
arm_2L 10965993..10966409 195..611 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:01:31 Download gff for RH51633.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10964905..10965719 731..1545 99 <- Minus
2L 10965792..10965910 612..730 100 <- Minus
2L 10965993..10966409 195..611 100 <- Minus
2L 10966502..10966621 75..194 100 <- Minus
2L 10968134..10968206 1..74 98   Minus

RH51633.pep Sequence

Translation from 131 to 844

> RH51633.pep
MAQVKPKSNKQSGKPVPAAKKSVQEKSSAQQKKNKQKAAAEKKKCGCCKW
TLGSIFIIALIAGALYYDTEVNGKGVFEKSATGKVLKNAGVLPHVQKSWY
TVMGAGARGYKWAEVNVPPYAEPVIKTTCDLWKLARNAACNAYQNGKGYF
GAKWPVVAKFIDQYVPNSSGKIEAFAAGVSDLAASSYEKAAALIKEKVLV
GRLSPENINQALNQTRNAALEYYNQFHKKVDAYAKLK*

RH51633.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 13:25:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14050-PA 677 GF14050-PA 462..677 22..237 1046 88.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 13:25:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10340-PA 680 GG10340-PA 465..680 22..237 1084 94 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 13:25:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11686-PA 235 GH11686-PA 1..235 1..237 925 75.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:10:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG33129-PH 237 CG33129-PH 1..237 1..237 1236 100 Plus
CG33129-PG 237 CG33129-PG 1..237 1..237 1236 100 Plus
CG33129-PC 237 CG33129-PC 1..237 1..237 1236 100 Plus
CG33129-PB 237 CG33129-PB 1..237 1..237 1236 100 Plus
CG33129-PA 237 CG33129-PA 1..237 1..237 1236 100 Plus
CG33129-PF 677 CG33129-PF 462..677 22..237 1130 100 Plus
CG33129-PE 677 CG33129-PE 462..677 22..237 1130 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 13:25:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17132-PA 685 GI17132-PA 449..685 4..237 938 74.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 13:25:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19022-PA 682 GL19022-PA 467..682 22..237 971 82.9 Plus
Dper\GL15224-PA 179 GL15224-PA 8..175 48..235 332 39.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 13:25:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17304-PA 682 GA17304-PA 467..682 22..237 972 82.9 Plus
Dpse\GA25596-PA 179 GA25596-PA 8..175 48..235 323 39.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 13:25:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11259-PA 682 GM11259-PA 467..682 22..237 1092 95.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 13:25:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22209-PA 974 GD22209-PA 468..574 22..128 544 96.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 13:25:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16168-PA 701 GJ16168-PA 469..701 3..237 986 79.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 13:25:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18367-PA 238 GK18367-PA 1..238 1..237 967 76.1 Plus
Dwil\GK18480-PA 64 GK18480-PA 1..64 174..237 265 76.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 13:25:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13143-PA 679 GE13143-PA 464..679 22..237 1075 93.1 Plus

RH51633.hyp Sequence

Translation from 131 to 844

> RH51633.hyp
MAQVKPKSNKQSGKPVPAAKKSVQEKSSAQQKKNKQKAAAEKKKCGCCKW
TLGSIFIIALIAGALYYDTEVNGKGVFEKSATGKVLKNAGVLPHVQKSWY
TVMGAGARGYKWAEVNVPPYAEPVIKTTCDLWKLARNAACNAYQNGKGYF
GAKWPVVAKFIDQYVPNSSGKIEAFAAGVSDLAASSYEKAAALIKEKVLV
GRLSPENINQALNQTRNAALEYYNQFHKKVDAYAKLK*

RH51633.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:26:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG33129-PH 237 CG33129-PH 1..237 1..237 1236 100 Plus
CG33129-PG 237 CG33129-PG 1..237 1..237 1236 100 Plus
CG33129-PC 237 CG33129-PC 1..237 1..237 1236 100 Plus
CG33129-PB 237 CG33129-PB 1..237 1..237 1236 100 Plus
CG33129-PA 237 CG33129-PA 1..237 1..237 1236 100 Plus