Clone RH51767 Report

Search the DGRC for RH51767

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:517
Well:67
Vector:pFlc-1
Associated Gene/TranscriptOsi12-RA
Protein status:RH51767.pep: gold
Preliminary Size:1172
Sequenced Size:1770

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1154 2002-01-01 Sim4 clustering to Release 2
CG1154 2003-07-26 Blastp of sequenced clone
Osi12 2008-04-29 Release 5.5 accounting
Osi12 2008-08-15 Release 5.9 accounting
Osi12 2008-12-18 5.12 accounting

Clone Sequence Records

RH51767.complete Sequence

1770 bp (1770 high quality bases) assembled on 2003-07-26

GenBank Submission: BT009951

> RH51767.complete
GATCAGTTTGATTCGAGCTAGCAGCCAGAGCAAGTGGCTCCCAGTGTCTC
TAGACAAGGATTTGTGGCCGAAGGACTAACCACCCACCCACCTGTGTGTA
GCACCTGTCGCGCGGTGTGCCGCGAGTGTTGTTGTTGACGTCGTTAGCCG
GGAAAAGTGTGAAAAGTGCCTAAGAATGATATTCAAGCAGTGGCCCTGGC
AGGCCCTCATCAGCCTACTCTCCGTGTTGTTCCTCGCCAGCAGTTGTGGG
GCGGCCACCGAGCAGCTGGGCAGCCCGCCCGGTCCCAGCCCATCCCAGAG
CGCCGGGGCACGGACCCTCCTCAGGGTCTACGACGAGTGCACCCGCGCCG
AGGCCGGATTCGTGCCATGTCTGAAAAAGAAGGCCATATCCTTTATCGAC
CGCCTGGCCCCCATCGACGCCATCAACGTGGCCGAGGGCATCAAGCTGGT
GCGCCTGGAAACAGCTCCCCGTCCGCCTGCCACGAGCGAGAACGAGCTGG
AGTCCTCGCTGCCCCGATCCGGCAGCGACCGAGATGCCAAGCTCACCAAC
ATGCTGATCGAGCGTCTCAGCTACTTCTTCAACGGTCACTCCCTGCAGGT
CAGCTTCCCCAAGCTCACATCCGATGAGATTGGACGCGGACTAGAGGAAG
GTCGTGGTAAAATGAAGAAGATGATGGGCATGATGATGATGGGCATGGCC
ATGAAGATGATGGGCATGATTCCGATTGCCATGGGTGCGCTCTACATCCT
GGCAGGCAAGGCACTGATTATCTCGAAGATCGCCCTGCTCCTAGCGGGCA
TCATCGGGCTGAAGAAGCTGATGTCCGGCAAGTCGTCAGGCGGCAGTTCT
GGCTGGTCCTCCGGAGGCGGCGGAGGAGGCGGTGGCTGGTCATCCGGAGG
CGGCGGTGGAGGAGGCGGTGGCTGGGACCGACGATCCCTGACCGAGGCCC
AGGAGCTGGCCTACCGAGCCCACCACCAGGAGCAGGTGGCTCACGCACAG
AGCCGCCCGCAGCTGCAGCATCTGCATCCGAAAGCAGCTGCGCCGCAAGT
GACCAAATCGTAGGATGGAAATCCAGATAGACAGGAAAGAGCAAGAGGAG
TGGAGGAGTGACCCCAAGTGTTACATAGCTGCATTTATCTTCTGGATAAA
TCACGGACGGCGGACGGATTGTAATTAGATATACACATAACTCTCTTTTT
GCACTTGCACTGCTGGGCAGAAAAGATGACTTGATGCACTTCCAACGGTT
CACTCGACGCACTGTGGCACCTATGGGTACATCGGATGAAATGTATCCAG
AACGTGCGTTCCCACTGGGCACTGCGGATTTTTTTATAATGATTAGTATT
TGCTTTAATCGATTACGTTTTGTTTAATGTATCGCTCTGCCCTGCTCTGT
TCTTCCAGCCGGGTTTACTGTTGCTGAGCCCGGCATCTGTATCTTTTTTT
TCAACCTGTATCTGTGTATCTGCAACTCACTGTGCTTCAATTCTTATGGC
TAACTGCACTTGCTATTTTCAATTACCTCTCGTACTTCCGCTTCTGCAGC
CCGTTTCCAAGTCCAACTCATTCCACTGGCGCACTTTGATTAACTCTAGC
CTGTCTAACTGTACTTAGCCACTAGGTATAATAATTTATTTAACTTTATT
ATTTATTTACCAGCCGTAAGTGTAAATCGCATGTAAGCAGCAAAGTTTTC
AAAAAACAGAAAAGCAAAAAAAATGTATACAAATAAAATCACTGATACCA
AGCGAAAAAAAAAAAAAAAA

RH51767.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:33:21
Subject Length Description Subject Range Query Range Score Percent Strand
Osi12.a 2298 Osi12.a 101..1855 2..1756 8760 99.9 Plus
Osi12-RA 1951 Osi12-RA 101..1855 2..1756 8760 99.9 Plus
CG13376-RA 582 CG13376-RA 192..257 850..915 210 87.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:35:36
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 2107060..2108165 649..1754 5515 99.9 Plus
chr3R 27901430 chr3R 2104185..2104835 2..652 3255 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:32:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:35:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6281390..6282497 649..1756 5525 99.9 Plus
3R 32079331 3R 6278533..6279183 2..652 3255 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:55:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 6022221..6023328 649..1756 5525 99.9 Plus
3R 31820162 3R 6019364..6020014 2..652 3255 100 Plus
X 23527363 X 274668..274733 915..850 210 87.8 Minus
Blast to na_te.dros performed on 2019-03-15 20:35:35 has no hits.

RH51767.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:36:21 Download gff for RH51767.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 2104183..2104835 1..652 99 == Plus
chr3R 2107132..2108165 721..1754 96   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:49:10 Download gff for RH51767.complete
Subject Subject Range Query Range Percent Splice Strand
Osi12-RA 1..888 176..1063 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:22:47 Download gff for RH51767.complete
Subject Subject Range Query Range Percent Splice Strand
Osi12-RA 1..888 176..1063 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:09:17 Download gff for RH51767.complete
Subject Subject Range Query Range Percent Splice Strand
Osi12-RA 1..888 176..1063 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:55:28 Download gff for RH51767.complete
Subject Subject Range Query Range Percent Splice Strand
Osi12-RA 1..888 176..1063 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:39:43 Download gff for RH51767.complete
Subject Subject Range Query Range Percent Splice Strand
Osi12-RA 1..888 176..1063 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:20:11 Download gff for RH51767.complete
Subject Subject Range Query Range Percent Splice Strand
Osi12-RA 1..1755 1..1754 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:22:47 Download gff for RH51767.complete
Subject Subject Range Query Range Percent Splice Strand
Osi12-RA 1..1755 1..1754 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:09:17 Download gff for RH51767.complete
Subject Subject Range Query Range Percent Splice Strand
Osi12-RA 1..1755 1..1754 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:55:28 Download gff for RH51767.complete
Subject Subject Range Query Range Percent Splice Strand
Osi12-RA 1..1755 1..1754 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:39:43 Download gff for RH51767.complete
Subject Subject Range Query Range Percent Splice Strand
Osi12-RA 1..1755 1..1754 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:36:21 Download gff for RH51767.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6278531..6279181 1..650 99 -> Plus
3R 6281392..6282495 651..1754 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:36:21 Download gff for RH51767.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6278531..6279181 1..650 99 -> Plus
3R 6281392..6282495 651..1754 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:36:21 Download gff for RH51767.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6278531..6279181 1..650 99 -> Plus
3R 6281392..6282495 651..1754 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:09:17 Download gff for RH51767.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2104253..2104903 1..650 99 -> Plus
arm_3R 2107114..2108217 651..1754 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:33:12 Download gff for RH51767.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6019362..6020012 1..650 99 -> Plus
3R 6022223..6023326 651..1754 99   Plus

RH51767.pep Sequence

Translation from 175 to 1062

> RH51767.pep
MIFKQWPWQALISLLSVLFLASSCGAATEQLGSPPGPSPSQSAGARTLLR
VYDECTRAEAGFVPCLKKKAISFIDRLAPIDAINVAEGIKLVRLETAPRP
PATSENELESSLPRSGSDRDAKLTNMLIERLSYFFNGHSLQVSFPKLTSD
EIGRGLEEGRGKMKKMMGMMMMGMAMKMMGMIPIAMGALYILAGKALIIS
KIALLLAGIIGLKKLMSGKSSGGSSGWSSGGGGGGGGWSSGGGGGGGGGW
DRRSLTEAQELAYRAHHQEQVAHAQSRPQLQHLHPKAAAPQVTKS*

RH51767.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:37:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16383-PA 295 GF16383-PA 1..295 1..295 902 85.2 Plus
Dana\GF16386-PA 267 GF16386-PA 3..209 11..218 272 29.4 Plus
Dana\GF16381-PA 232 GF16381-PA 29..232 49..268 246 33.2 Plus
Dana\GF16380-PA 273 GF16380-PA 3..246 5..227 242 31.6 Plus
Dana\GF18624-PA 305 GF18624-PA 21..229 26..216 194 29.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:37:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13181-PA 295 GG13181-PA 1..295 1..295 1479 96.6 Plus
Dere\GG13215-PA 268 GG13215-PA 3..268 11..269 272 28.1 Plus
Dere\GG13161-PA 233 GG13161-PA 29..233 49..268 254 34.5 Plus
Dere\GG13155-PA 274 GG13155-PA 3..252 5..253 203 29 Plus
Dere\GG10544-PA 302 GG10544-PA 23..285 33..265 199 28.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:37:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14027-PA 306 GH14027-PA 20..272 21..266 831 81.4 Plus
Dgri\GH14025-PA 231 GH14025-PA 29..231 49..268 268 34.1 Plus
Dgri\GH14030-PA 270 GH14030-PA 53..260 65..263 248 30.6 Plus
Dgri\GH14024-PA 281 GH14024-PA 68..268 48..238 228 33.2 Plus
Dgri\GH14019-PA 284 GH14019-PA 44..278 46..268 193 33.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:51:27
Subject Length Description Subject Range Query Range Score Percent Strand
Osi12-PA 295 CG1154-PA 1..295 1..295 1515 100 Plus
Osi14-PA 268 CG1155-PA 3..268 11..269 286 28.5 Plus
Osi9-PA 233 CG15592-PA 29..194 49..219 276 38.5 Plus
Osi8-PA 274 CG15591-PA 63..269 50..247 268 34 Plus
Osi7-PA 288 CG1153-PA 43..287 51..270 259 32.3 Plus
Osi11-PA 302 CG15596-PA 2..226 9..216 191 29.7 Plus
Osi16-PA 278 CG31561-PA 10..264 11..246 185 26 Plus
Osi21-PA 282 CG14925-PA 56..266 50..243 184 29.8 Plus
Osi3-PB 288 CG1150-PB 99..249 107..233 175 37.5 Plus
Osi3-PA 288 CG1150-PA 99..249 107..233 175 37.5 Plus
Osi6-PB 312 CG1151-PB 63..309 59..268 174 28.9 Plus
Osi6-PA 312 CG1151-PA 63..309 59..268 174 28.9 Plus
CG13376-PC 193 CG13376-PC 56..87 217..248 154 81.2 Plus
CG13376-PB 200 CG13376-PB 63..94 217..248 154 81.2 Plus
CG13376-PD 204 CG13376-PD 67..98 217..248 154 81.2 Plus
CG13376-PC 193 CG13376-PC 67..102 217..249 146 75 Plus
CG13376-PB 200 CG13376-PB 74..109 217..249 146 75 Plus
CG13376-PD 204 CG13376-PD 78..113 217..249 146 75 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:37:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24400-PA 289 GI24400-PA 1..267 1..268 877 82.5 Plus
Dmoj\GI24403-PA 272 GI24403-PA 54..260 65..263 294 33 Plus
Dmoj\GI24397-PA 232 GI24397-PA 29..232 49..268 274 34.1 Plus
Dmoj\GI24392-PA 282 GI24392-PA 8..282 13..273 238 31 Plus
Dmoj\GI24396-PA 285 GI24396-PA 68..272 48..238 228 34.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:37:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24063-PA 307 GL24063-PA 1..307 1..295 841 79.2 Plus
Dper\GL24067-PA 269 GL24067-PA 54..269 65..269 278 30.9 Plus
Dper\GL24061-PA 232 GL24061-PA 29..232 49..268 276 35 Plus
Dper\GL24060-PA 291 GL24060-PA 69..277 48..238 220 32.9 Plus
Dper\GL23479-PA 317 GL23479-PA 26..237 30..216 199 30.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:37:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11059-PA 310 GA11059-PA 23..310 21..295 830 81.3 Plus
Dpse\GA13834-PA 232 GA13834-PA 29..232 49..268 279 35.4 Plus
Dpse\GA11061-PA 269 GA11061-PA 54..269 65..269 278 30.9 Plus
Dpse\GA13833-PA 287 GA13833-PA 69..273 48..238 224 33.5 Plus
Dpse\GA13838-PA 317 GA13838-PA 26..237 30..216 186 27.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:37:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10872-PA 295 GM10872-PA 1..295 1..295 1503 98.3 Plus
Dsec\GM10875-PA 268 GM10875-PA 3..268 11..269 266 28.2 Plus
Dsec\GM10870-PA 233 GM10870-PA 29..233 49..268 254 34.5 Plus
Dsec\GM10869-PA 274 GM10869-PA 61..260 48..238 217 34.1 Plus
Dsec\GM10562-PA 302 GM10562-PA 30..285 38..265 196 28.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:37:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19852-PA 295 GD19852-PA 1..295 1..295 1508 98.6 Plus
Dsim\GD19857-PA 268 GD19857-PA 3..268 11..269 270 28.1 Plus
Dsim\GD19850-PA 233 GD19850-PA 29..233 49..268 254 34.5 Plus
Dsim\GD19553-PA 302 GD19553-PA 30..285 38..265 197 28.2 Plus
Dsim\GD22180-PA 284 GD22180-PA 56..230 50..225 163 33 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:37:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14258-PA 296 GJ14258-PA 19..266 22..268 830 86.9 Plus
Dvir\GJ14261-PA 277 GJ14261-PA 3..263 11..263 293 31 Plus
Dvir\GJ14255-PA 231 GJ14255-PA 29..231 49..268 269 33.2 Plus
Dvir\GJ14248-PA 282 GJ14248-PA 43..282 46..273 218 32.5 Plus
Dvir\GJ14913-PA 277 GJ14913-PA 59..228 50..225 181 32.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:37:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13041-PA 298 GK13041-PA 3..273 1..268 801 81.1 Plus
Dwil\GK23349-PA 164 GK23349-PA 3..162 1..160 607 75 Plus
Dwil\GK13044-PA 268 GK13044-PA 53..259 65..263 281 33.3 Plus
Dwil\GK13038-PA 256 GK13038-PA 72..253 82..248 218 35.5 Plus
Dwil\GK23641-PA 134 GK23641-PA 20..111 182..270 207 85.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:37:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10195-PA 298 GE10195-PA 1..298 1..295 1067 94.3 Plus
Dyak\GE10198-PA 268 GE10198-PA 3..268 11..269 265 27.7 Plus
Dyak\GE10192-PA 233 GE10192-PA 29..233 49..268 254 34.5 Plus
Dyak\GE24110-PA 302 GE24110-PA 23..285 33..265 204 28.9 Plus
Dyak\GE10191-PA 274 GE10191-PA 3..252 5..253 195 30.4 Plus

RH51767.hyp Sequence

Translation from 175 to 1062

> RH51767.hyp
MIFKQWPWQALISLLSVLFLASSCGAATEQLGSPPGPSPSQSAGARTLLR
VYDECTRAEAGFVPCLKKKAISFIDRLAPIDAINVAEGIKLVRLETAPRP
PATSENELESSLPRSGSDRDAKLTNMLIERLSYFFNGHSLQVSFPKLTSD
EIGRGLEEGRGKMKKMMGMMMMGMAMKMMGMIPIAMGALYILAGKALIIS
KIALLLAGIIGLKKLMSGKSSGGSSGWSSGGGGGGGGWSSGGGGGGGGGW
DRRSLTEAQELAYRAHHQEQVAHAQSRPQLQHLHPKAAAPQVTKS*

RH51767.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:59:05
Subject Length Description Subject Range Query Range Score Percent Strand
Osi12-PA 295 CG1154-PA 1..295 1..295 1515 100 Plus
Osi14-PA 268 CG1155-PA 3..268 11..269 286 28.5 Plus
Osi9-PA 233 CG15592-PA 29..194 49..219 276 38.5 Plus
Osi8-PA 274 CG15591-PA 63..269 50..247 268 34 Plus
Osi7-PA 288 CG1153-PA 43..287 51..270 259 32.3 Plus