BDGP Sequence Production Resources |
Search the DGRC for RH52122
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 521 |
Well: | 22 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG1116-RB |
Protein status: | RH52122.pep: gold |
Preliminary Size: | 2054 |
Sequenced Size: | 1573 |
Gene | Date | Evidence |
---|---|---|
CG1116 | 2002-01-01 | Sim4 clustering to Release 2 |
CG1116 | 2003-01-01 | Sim4 clustering to Release 3 |
CG1116 | 2003-08-11 | Blastp of sequenced clone |
CG1116 | 2008-04-29 | Release 5.5 accounting |
CG1116 | 2008-08-15 | Release 5.9 accounting |
CG1116 | 2008-12-18 | 5.12 accounting |
1573 bp (1573 high quality bases) assembled on 2003-08-11
GenBank Submission: BT010211
> RH52122.complete GACTCTACGGGAGTCGCGACCAAATAAAAAAGTAAATAGATGATTGAAAT TAAGGCGAAACTGCTGCGTGCGGACTCGGCCATCTACGCCACGGGCGAGA GAGTCCAGTGCCTGATCGAGTTCACCCACAAGGTGTTCTCCGACGAGCCA GCCGCGTCGCAGGCTGTCCACAATGCCAACGAAGTAAGCCAGGAGAACCT GGCCTGGGCCTCGGCGCAGCTGCACTGCTACCGGAAAACTAGCTACTCTA CATCCGCGGGCGACCGAGCCGCGGAGCTCACGGATGATCGGCAGGACGGC TTTGGATGCGGTGACGCAGGCGCCGGGAGAGGTGATTGTGGCCACCAAGC CCAAGATCCTCTTCTGCGACCTGCGCCTCCAGCCTGGAGAGACCAAGATG TACTTTTTCAATGAATTCATTCCCCGCGATGGCCCACCCACGTACAGAGG CCACAACATCCGGTACTTCTACAAGATCACCATTGCTACGCAACGGGTCA AGTCCAAGGTGCAAACGCTGGCCGTTCCCATCCGGGTGTTGCCAATTCCC ATAATTTCGCGGCCCGACGAACTTCCCGTAACCGTAGAGACCAACGAAGA GCTGGCGCCCACTAATCCGTTCCTGGAAAAGCGCGAGATCAGCGAGCTTG AGATATCGTGGCACCACCTTAAGAACGTAACCGCTCGGCGGGCGCCGAAG TTCTACCGCATCTCGAACAAACGCGGCTTCGTTGGCCGCTTTTGTTTGTT CAAGCCAGCGTATAAGCTCGGTGAGGACATTGTGGGCAGCCTGGACTTTG ATCCCGGCGTTAACCCCCGAAAGGTGCGCTGCGTCCAGTTTTCGGTAAAG CTGCAGCAGCAGGAGCTTTCCATCCGACCGCAACCAGTGCAAAATCACCA GCTGCAGTCGCAATCCTCGACGGGCGATGATGTCTCCTCGATGAACTCCT TTGATATGGCCAGCATAGCTAGCGGAGTGTTGGCAGATAACCTCCACAAG TCGGCCACATCGGCTAGCTCAAAGGTTAAGGAGGCGCCTGAGCCAACCGG GAAACTTTCGACCATTTCCACCTCCCACCAAGTGTGCTACGCAACGCTGC AGACCCAGGTCGTGGTACCCATTCCGCTGCACGTAACACCAACATTCCGC ACAGACCTCGTCGACGTGCGATGGCGATTGCATTTCGAGTTTGTGACCAC AACTTTGATTGACTTTGGCATTCCGAATCCGGAGTCCGGCGAGCTAAAAG CACCGTCTGAAATGCCCGTGGAGACGATGGTATGGAATCTGCCCGTGACC GTCTACGCTGCGAATCCTCTCCAGATTTATGCTCCAAACCAGACATTCAA CCTGCTTATAAAGTAATAGCACTTCAGTTAACTGTGTTCTCTTGATGGAA GCTATATAAGGCCGTTTAGAAAGAGCAAACGAAAGCAACAAGTCGATTAC GGTTCCTTTTAAAAACTTCTGAAACCCAATCCCCTCTTACGTCTTTGTAA AATACAAAAATCTTAATTAAAATTTAGTCGAATATACGAATCAAACCGCT TGAAATCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG1116-RA | 1599 | CG1116-RA | 42..1599 | 2..1557 | 7690 | 99.6 | Plus |
CG1116.a | 1602 | CG1116.a | 42..1602 | 2..1557 | 7635 | 99.4 | Plus |
CG1116-RB | 1654 | CG1116-RB | 281..1654 | 186..1557 | 6800 | 99.7 | Plus |
CG1116-RB | 1654 | CG1116-RB | 34..220 | 2..188 | 905 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 1046411..1046990 | 822..1401 | 2885 | 99.8 | Plus |
chr3R | 27901430 | chr3R | 1045863..1046134 | 402..673 | 1360 | 100 | Plus |
chr3R | 27901430 | chr3R | 1045580..1045797 | 186..401 | 1025 | 99.1 | Plus |
chr3R | 27901430 | chr3R | 1045333..1045519 | 2..188 | 905 | 98.9 | Plus |
chr3R | 27901430 | chr3R | 1047056..1047212 | 1401..1557 | 785 | 100 | Plus |
chr3R | 27901430 | chr3R | 1046198..1046351 | 672..825 | 770 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 5220747..5221326 | 822..1401 | 2885 | 99.8 | Plus |
3R | 32079331 | 3R | 5220199..5220470 | 402..673 | 1360 | 100 | Plus |
3R | 32079331 | 3R | 5219916..5220133 | 186..401 | 1025 | 99.1 | Plus |
3R | 32079331 | 3R | 5219669..5219855 | 2..188 | 905 | 98.9 | Plus |
3R | 32079331 | 3R | 5221392..5221553 | 1401..1562 | 795 | 99.4 | Plus |
3R | 32079331 | 3R | 5220534..5220687 | 672..825 | 770 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 4961578..4962157 | 822..1401 | 2885 | 99.8 | Plus |
3R | 31820162 | 3R | 4961030..4961301 | 402..673 | 1360 | 100 | Plus |
3R | 31820162 | 3R | 4960747..4960964 | 186..401 | 1035 | 99 | Plus |
3R | 31820162 | 3R | 4960500..4960686 | 2..188 | 905 | 98.9 | Plus |
3R | 31820162 | 3R | 4962223..4962384 | 1401..1562 | 795 | 99.3 | Plus |
3R | 31820162 | 3R | 4961365..4961518 | 672..825 | 770 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 1045332..1045519 | 1..188 | 98 | -> | Plus |
chr3R | 1045583..1045797 | 189..401 | 99 | -> | Plus |
chr3R | 1045863..1046134 | 402..673 | 100 | -> | Plus |
chr3R | 1046200..1046349 | 674..823 | 100 | -> | Plus |
chr3R | 1046413..1046989 | 824..1400 | 99 | -> | Plus |
chr3R | 1047056..1047212 | 1401..1557 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1116-RC | 1..1329 | 40..1366 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1116-RA | 1..1329 | 40..1366 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1116-RA | 1..1329 | 40..1366 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1116-RC | 1..1329 | 40..1366 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1116-RA | 1..1329 | 40..1366 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1116-RA | 2..1559 | 2..1557 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1116-RA | 2..1559 | 2..1557 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1116-RA | 12..1570 | 1..1557 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1116-RA | 2..1559 | 2..1557 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1116-RA | 12..1570 | 1..1557 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5219919..5220133 | 189..401 | 99 | -> | Plus |
3R | 5219668..5219855 | 1..188 | 98 | -> | Plus |
3R | 5220199..5220470 | 402..673 | 100 | -> | Plus |
3R | 5220536..5220685 | 674..823 | 100 | -> | Plus |
3R | 5220749..5221325 | 824..1400 | 99 | -> | Plus |
3R | 5221392..5221548 | 1401..1557 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5219919..5220133 | 189..401 | 99 | -> | Plus |
3R | 5219668..5219855 | 1..188 | 98 | -> | Plus |
3R | 5220199..5220470 | 402..673 | 100 | -> | Plus |
3R | 5220536..5220685 | 674..823 | 100 | -> | Plus |
3R | 5220749..5221325 | 824..1400 | 99 | -> | Plus |
3R | 5221392..5221548 | 1401..1557 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5219919..5220133 | 189..401 | 99 | -> | Plus |
3R | 5219668..5219855 | 1..188 | 98 | -> | Plus |
3R | 5220199..5220470 | 402..673 | 100 | -> | Plus |
3R | 5220536..5220685 | 674..823 | 100 | -> | Plus |
3R | 5220749..5221325 | 824..1400 | 99 | -> | Plus |
3R | 5221392..5221548 | 1401..1557 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 1046258..1046407 | 674..823 | 100 | -> | Plus |
arm_3R | 1045390..1045577 | 1..188 | 98 | -> | Plus |
arm_3R | 1045641..1045855 | 189..401 | 99 | -> | Plus |
arm_3R | 1045921..1046192 | 402..673 | 100 | -> | Plus |
arm_3R | 1046471..1047047 | 824..1400 | 99 | -> | Plus |
arm_3R | 1047114..1047270 | 1401..1557 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 4960750..4960964 | 189..401 | 99 | -> | Plus |
3R | 4961030..4961301 | 402..673 | 100 | -> | Plus |
3R | 4961367..4961516 | 674..823 | 100 | -> | Plus |
3R | 4961580..4962156 | 824..1400 | 99 | -> | Plus |
3R | 4962223..4962379 | 1401..1557 | 100 | Plus | |
3R | 4960499..4960686 | 1..188 | 98 | -> | Plus |
Translation from 39 to 1365
> RH52122.hyp MIEIKAKLLRADSAIYATGERVQCLIEFTHKVFSDEPAASQAVHNANEAS QENLAWASAQLHCYRKTSYSTSAGDRAAELTEMIGRTALDAVTQAPGEVI VATKPKILFCDLRLQPGETKMYFFNEFIPRDGPPTYRGHNIRYFYKITIA TQRVKSKVQTLAVPIRVLPIPIISRPDELPVTVETNEELAPTNPFLEKRE ISELEISWHHLKNVTARRAPKFYRISNKRGFVGRFCLFKPAYKLGEDIVG SLDFDPGVNPRKVRCVQFSVKLQQQELSIRPQPVQNHQLQSQSSTGDDVS SMNSFDMASIASGVLADNLHKSATSASSKVKEAPEPTGKLSTISTSHQVC YATLQTQVVVPIPLHVTPTFRTDLVDVRWRLHFEFVTTTLIDFGIPNPES GELKAPSEMPVETMVWNLPVTVYAANPLQIYAPNQTFNLLIK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG1116-PA | 442 | CG1116-PA | 1..442 | 1..442 | 2284 | 100 | Plus |
CG1116-PD | 443 | CG1116-PD | 1..443 | 1..442 | 2272 | 99.8 | Plus |
CG1116-PB | 360 | CG1116-PB | 1..360 | 83..442 | 1869 | 100 | Plus |
Translation from 283 to 1365
> RH52122.pep MIGRTALDAVTQAPGEVIVATKPKILFCDLRLQPGETKMYFFNEFIPRDG PPTYRGHNIRYFYKITIATQRVKSKVQTLAVPIRVLPIPIISRPDELPVT VETNEELAPTNPFLEKREISELEISWHHLKNVTARRAPKFYRISNKRGFV GRFCLFKPAYKLGEDIVGSLDFDPGVNPRKVRCVQFSVKLQQQELSIRPQ PVQNHQLQSQSSTGDDVSSMNSFDMASIASGVLADNLHKSATSASSKVKE APEPTGKLSTISTSHQVCYATLQTQVVVPIPLHVTPTFRTDLVDVRWRLH FEFVTTTLIDFGIPNPESGELKAPSEMPVETMVWNLPVTVYAANPLQIYA PNQTFNLLIK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18927-PA | 439 | GF18927-PA | 84..439 | 1..360 | 1715 | 91.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12649-PA | 441 | GG12649-PA | 83..441 | 1..360 | 1841 | 95.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17709-PA | 422 | GH17709-PA | 72..422 | 1..360 | 1622 | 83.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG1116-PD | 443 | CG1116-PD | 84..443 | 1..360 | 1869 | 100 | Plus |
CG1116-PA | 442 | CG1116-PA | 83..442 | 1..360 | 1869 | 100 | Plus |
CG1116-PB | 360 | CG1116-PB | 1..360 | 1..360 | 1869 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22539-PA | 428 | GI22539-PA | 78..428 | 1..360 | 1657 | 84.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21632-PA | 435 | GL21632-PA | 81..435 | 1..360 | 1686 | 86.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10805-PA | 434 | GA10805-PA | 81..434 | 1..360 | 1677 | 86.9 | Plus |
Dpse\GA10805-PB | 399 | GA10805-PB | 46..399 | 1..360 | 1676 | 86.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10792-PA | 442 | GM10792-PA | 83..442 | 1..360 | 1906 | 97.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19766-PA | 360 | GD19766-PA | 1..360 | 1..360 | 1892 | 97.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10143-PA | 432 | GJ10143-PA | 82..432 | 1..360 | 1658 | 85.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK12960-PA | 433 | GK12960-PA | 82..433 | 1..360 | 1629 | 83.7 | Plus |
Dwil\GK13223-PA | 53 | GK13223-PA | 1..53 | 308..360 | 240 | 83 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE25453-PA | 441 | GE25453-PA | 82..441 | 1..360 | 1813 | 93.9 | Plus |