BDGP Sequence Production Resources |
Search the DGRC for RH52220
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 522 |
Well: | 20 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG6299-RA |
Protein status: | RH52220.pep: gold |
Preliminary Size: | 1691 |
Sequenced Size: | 1666 |
Gene | Date | Evidence |
---|---|---|
CG6294 | 2002-01-01 | Sim4 clustering to Release 2 |
CG6299 | 2002-06-26 | Blastp of sequenced clone |
CG6299 | 2008-04-29 | Release 5.5 accounting |
CG6299 | 2008-08-15 | Release 5.9 accounting |
CG6294 | 2008-08-15 | Release 5.9 accounting |
CG6299 | 2008-12-18 | 5.12 accounting |
CG6294 | 2008-12-18 | 5.12 accounting |
1666 bp (1666 high quality bases) assembled on 2002-06-26
GenBank Submission: BT003446
> RH52220.complete GATTTTCCCGGTCTGGCAGCACAGTGCGTTTGTTCGGCTTTTCCAATTGG ATTTCGGAGTCTGGATTTTGATTTGAGCAGACAAACGGAACCGGAAATCC TGGCCAGAATTTGGCAATGAGCAGCGGCACCGCCGGCTGCAAGCGCGCGC ACAGCATCGAGGTTGAGCAGCCGCTGACGTCGGAGCGCCTGGAGCACAGC CTGCTGTTGGTCAAGGGACGCCTGGTGCCCAAGTGTTCCACGGCGCGTCA ACTGAAGGCGATCCTCGATCTGCCCGAGCACCTGTCCCAGGAGCAGCTCA CCCAGCTGTCGGCCGGCGGCGAGTTTAAGCTCCTCCTCGTCCGCCGGCAG TGGCGCCGCAACGGGCAACCGCGCCCGCCTCACCAAACTGAAATTGCAGC CAAGCAGCCAACTGCTGGACAACTACCACAACCAGCGACGCCACGATAGC TTCTATTTTGCACGCAACTGTGCCGTAATCCTGGCCCATCATCGCTGGCT GAATTTGGAGCTGGAGCAGACGGCTGCCGTCGACTTTGAGGCGGCCAGCA TACAATTGAACCGCGACACGCGTGAGATTCGCTCCAGCAGGCCCATCCGG CTGATCGAGCTGCGCTGCAACCAGAACAGCCTGGTGGCCCACTACGAGGA GTTCGAGGAGCCGTATGTGCACCGCTTCCAGCTGCCCGCTTCGCTGTGGC ATCTCCTCGCGGAGCAGTGCACCCACTACGTTTTCGTGCTGACCACCAGT GGCGACACCAAGCGGCTATCCTGCGATTCCTCCTAGGATTGCCGCAGCGC GAGATTTACCAATCAGTCGGCGTTCGAAGCGCATTGGATACGGAACCAAT CGGAGAGCTAAGGAGAGCAGAAACGCAGCAGAGCAGAGCAGGAAATTAGA GGACGGAACAGGACAGAACAGGAGCACACGATGGCAGCCAGCGAGGGATC GGCGGCGCGCATTCAGTTCAAGGCGCTGCGCGGATTTCCGGCCATCGGCG ATACCGCTGATAAGCTGGAGACACAGGCCTTTCTCGACGCCTCCAAGGAG ATAGTAACCGTCATAGAGAGCTTCGGCAAACTATTCACACCCGTGATCAG CGACATGAACGGAAACATAAACAAACTGACGAAAGCCTACGGAGCGGATG TGGTCAAGTACCAGTATCTGGAGGATCTGATCGTGCTGAACGTGAACGTG GACGACTTTGCGGCCAACGCGCTGCTCTGGCTGAAGCGCGGCCTGCAGCT CATATGCACCTTCTTCGAGAACATCTACAACGATGCCCAGGCCAAGGAGG CACTTAAGCAGCATCTGCAGGACGCGTACGAACGCACATTGAAGCCCTAC CACGGCTTCATCGTCCAGAGCACAATCAAGATCATCTACAGTTGGGTGCC CACGCGCAGCCAACTGCTGGGCCAGGGTGTCGCCCAGGCGGAGAACATCG AGGTGCTGACCAGCTTCCTGCCGCGTATGCGCGCCCATCTGGACTCGATC GACGCCCTGCTGAAGGCGCACAACTTGGACGATGCACGAAAGGTGTGATC GTTCCTTAGCCTAGCCTAGCCTAGCTTAGCTTAAATAGCTTATCCTACTT TATTATTTATGCCCATGTCCAAGTAAAACGCAGAGCCTTACTTATAAACC AAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG6299-RB | 2561 | CG6299-RB | 1241..2561 | 330..1650 | 6590 | 99.9 | Plus |
CG6294-RA | 2558 | CG6294-RA | 1238..2558 | 330..1650 | 6590 | 99.9 | Plus |
CG6299-RA | 1013 | CG6299-RA | 165..1013 | 802..1650 | 4245 | 100 | Plus |
CG6299-RB | 2561 | CG6299-RB | 2..334 | 2..334 | 1665 | 100 | Plus |
CG6294-RA | 2558 | CG6294-RA | 1..331 | 4..334 | 1655 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 15353890..15354363 | 330..803 | 2310 | 99.2 | Plus |
chrX | 22417052 | chrX | 15352654..15352986 | 2..334 | 1665 | 100 | Plus |
chrX | 22417052 | chrX | 15356484..15356755 | 1379..1650 | 1315 | 98.9 | Plus |
chrX | 22417052 | chrX | 15355672..15355936 | 802..1066 | 1310 | 99.6 | Plus |
chrX | 22417052 | chrX | 15356162..15356419 | 1123..1380 | 1275 | 99.6 | Plus |
chrX | 22417052 | chrX | 15356010..15356067 | 1065..1122 | 290 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 15463952..15464425 | 330..803 | 2355 | 99.8 | Plus |
X | 23542271 | X | 15462713..15463045 | 2..334 | 1665 | 100 | Plus |
X | 23542271 | X | 15466541..15466813 | 1379..1651 | 1365 | 100 | Plus |
X | 23542271 | X | 15465729..15465993 | 802..1066 | 1325 | 100 | Plus |
X | 23542271 | X | 15466219..15466476 | 1123..1380 | 1290 | 100 | Plus |
X | 23542271 | X | 15466067..15466124 | 1065..1122 | 290 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 15472050..15472523 | 330..803 | 2355 | 99.7 | Plus |
X | 23527363 | X | 15470811..15471143 | 2..334 | 1665 | 100 | Plus |
X | 23527363 | X | 15474639..15474911 | 1379..1651 | 1365 | 100 | Plus |
X | 23527363 | X | 15473827..15474091 | 802..1066 | 1325 | 100 | Plus |
X | 23527363 | X | 15474317..15474574 | 1123..1380 | 1290 | 100 | Plus |
X | 23527363 | X | 15474165..15474222 | 1065..1122 | 290 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 15356162..15356419 | 1123..1380 | 99 | -> | Plus |
chrX | 15352653..15352996 | 1..350 | 96 | -> | Plus |
chrX | 15353911..15354363 | 351..803 | 99 | -> | Plus |
chrX | 15355674..15355730 | 804..860 | 100 | == | Plus |
chrX | 15355794..15355936 | 924..1066 | 100 | -> | Plus |
chrX | 15356012..15356067 | 1067..1122 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6299-RA | 1..618 | 931..1548 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6299-RA | 1..618 | 931..1548 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6299-RB | 1..618 | 931..1548 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6299-RA | 1..618 | 931..1548 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6299-RC | 1..618 | 931..1548 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6299-RB | 2..1658 | 2..1649 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6294-RA | 1..329 | 4..332 | 100 | <- | Plus |
CG6294-RA | 1241..2558 | 333..1650 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6294-RA | 1..322 | 11..332 | 100 | <- | Plus |
CG6294-RA | 1234..2551 | 333..1650 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6299-RB | 2..1658 | 2..1649 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6294-RA | 1..322 | 11..332 | 100 | <- | Plus |
CG6294-RA | 1234..2551 | 333..1650 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15466219..15466476 | 1123..1380 | 100 | -> | Plus |
X | 15463955..15464425 | 333..803 | 99 | -> | Plus |
X | 15462712..15463043 | 1..332 | 99 | -> | Plus |
X | 15465731..15465993 | 804..1066 | 100 | -> | Plus |
X | 15466069..15466124 | 1067..1122 | 100 | -> | Plus |
X | 15466543..15466812 | 1381..1650 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15466219..15466476 | 1123..1380 | 100 | -> | Plus |
X | 15463955..15464425 | 333..803 | 99 | -> | Plus |
X | 15462712..15463043 | 1..332 | 99 | -> | Plus |
X | 15465731..15465993 | 804..1066 | 100 | -> | Plus |
X | 15466069..15466124 | 1067..1122 | 100 | -> | Plus |
X | 15466543..15466812 | 1381..1650 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15466219..15466476 | 1123..1380 | 100 | -> | Plus |
X | 15463955..15464425 | 333..803 | 99 | -> | Plus |
X | 15462712..15463043 | 1..332 | 99 | -> | Plus |
X | 15465731..15465993 | 804..1066 | 100 | -> | Plus |
X | 15466069..15466124 | 1067..1122 | 100 | -> | Plus |
X | 15466543..15466812 | 1381..1650 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 15356745..15357076 | 1..332 | 99 | -> | Plus |
arm_X | 15357988..15358458 | 333..803 | 99 | -> | Plus |
arm_X | 15359764..15360026 | 804..1066 | 100 | -> | Plus |
arm_X | 15360102..15360157 | 1067..1122 | 100 | -> | Plus |
arm_X | 15360252..15360509 | 1123..1380 | 100 | -> | Plus |
arm_X | 15360576..15360845 | 1381..1650 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15473829..15474091 | 804..1066 | 100 | -> | Plus |
X | 15474167..15474222 | 1067..1122 | 100 | -> | Plus |
X | 15474317..15474574 | 1123..1380 | 100 | -> | Plus |
X | 15474641..15474910 | 1381..1650 | 100 | Plus | |
X | 15470810..15471141 | 1..332 | 99 | -> | Plus |
X | 15472053..15472523 | 333..803 | 99 | -> | Plus |
Translation from 930 to 1547
> RH52220.pep MAASEGSAARIQFKALRGFPAIGDTADKLETQAFLDASKEIVTVIESFGK LFTPVISDMNGNINKLTKAYGADVVKYQYLEDLIVLNVNVDDFAANALLW LKRGLQLICTFFENIYNDAQAKEALKQHLQDAYERTLKPYHGFIVQSTIK IIYSWVPTRSQLLGQGVAQAENIEVLTSFLPRMRAHLDSIDALLKAHNLD DARKV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22258-PA | 202 | GF22258-PA | 1..202 | 1..205 | 956 | 88.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17882-PA | 204 | GG17882-PA | 1..204 | 1..205 | 1039 | 96.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12320-PA | 197 | GH12320-PA | 4..197 | 9..205 | 895 | 84.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG6299-PE | 205 | CG6299-PE | 1..205 | 1..205 | 1035 | 100 | Plus |
CG6299-PD | 205 | CG6299-PD | 1..205 | 1..205 | 1035 | 100 | Plus |
CG6299-PC | 205 | CG6299-PC | 1..205 | 1..205 | 1035 | 100 | Plus |
CG6299-PA | 205 | CG6299-PA | 1..205 | 1..205 | 1035 | 100 | Plus |
CG6299-PB | 205 | CG6299-PB | 1..205 | 1..205 | 1035 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21465-PA | 198 | GI21465-PA | 4..198 | 9..205 | 884 | 82.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13416-PA | 199 | GL13416-PA | 3..196 | 6..201 | 782 | 73.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19499-PA | 199 | GA19499-PA | 3..197 | 6..202 | 785 | 73.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM19567-PA | 204 | GM19567-PA | 1..204 | 1..205 | 1048 | 98 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24819-PA | 189 | GD24819-PA | 1..189 | 1..205 | 936 | 90.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16485-PA | 197 | GJ16485-PA | 4..197 | 9..205 | 912 | 86.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25440-PA | 222 | GK25440-PA | 26..222 | 7..205 | 904 | 84.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE17187-PA | 204 | GE17187-PA | 1..204 | 1..205 | 1035 | 96.1 | Plus |
Translation from 930 to 1547
> RH52220.hyp MAASEGSAARIQFKALRGFPAIGDTADKLETQAFLDASKEIVTVIESFGK LFTPVISDMNGNINKLTKAYGADVVKYQYLEDLIVLNVNVDDFAANALLW LKRGLQLICTFFENIYNDAQAKEALKQHLQDAYERTLKPYHGFIVQSTIK IIYSWVPTRSQLLGQGVAQAENIEVLTSFLPRMRAHLDSIDALLKAHNLD DARKV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG6299-PE | 205 | CG6299-PE | 1..205 | 1..205 | 1035 | 100 | Plus |
CG6299-PD | 205 | CG6299-PD | 1..205 | 1..205 | 1035 | 100 | Plus |
CG6299-PC | 205 | CG6299-PC | 1..205 | 1..205 | 1035 | 100 | Plus |
CG6299-PA | 205 | CG6299-PA | 1..205 | 1..205 | 1035 | 100 | Plus |
CG6299-PB | 205 | CG6299-PB | 1..205 | 1..205 | 1035 | 100 | Plus |