Clone RH52220 Report

Search the DGRC for RH52220

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:522
Well:20
Vector:pFlc-1
Associated Gene/TranscriptCG6299-RA
Protein status:RH52220.pep: gold
Preliminary Size:1691
Sequenced Size:1666

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6294 2002-01-01 Sim4 clustering to Release 2
CG6299 2002-06-26 Blastp of sequenced clone
CG6299 2008-04-29 Release 5.5 accounting
CG6299 2008-08-15 Release 5.9 accounting
CG6294 2008-08-15 Release 5.9 accounting
CG6299 2008-12-18 5.12 accounting
CG6294 2008-12-18 5.12 accounting

Clone Sequence Records

RH52220.complete Sequence

1666 bp (1666 high quality bases) assembled on 2002-06-26

GenBank Submission: BT003446

> RH52220.complete
GATTTTCCCGGTCTGGCAGCACAGTGCGTTTGTTCGGCTTTTCCAATTGG
ATTTCGGAGTCTGGATTTTGATTTGAGCAGACAAACGGAACCGGAAATCC
TGGCCAGAATTTGGCAATGAGCAGCGGCACCGCCGGCTGCAAGCGCGCGC
ACAGCATCGAGGTTGAGCAGCCGCTGACGTCGGAGCGCCTGGAGCACAGC
CTGCTGTTGGTCAAGGGACGCCTGGTGCCCAAGTGTTCCACGGCGCGTCA
ACTGAAGGCGATCCTCGATCTGCCCGAGCACCTGTCCCAGGAGCAGCTCA
CCCAGCTGTCGGCCGGCGGCGAGTTTAAGCTCCTCCTCGTCCGCCGGCAG
TGGCGCCGCAACGGGCAACCGCGCCCGCCTCACCAAACTGAAATTGCAGC
CAAGCAGCCAACTGCTGGACAACTACCACAACCAGCGACGCCACGATAGC
TTCTATTTTGCACGCAACTGTGCCGTAATCCTGGCCCATCATCGCTGGCT
GAATTTGGAGCTGGAGCAGACGGCTGCCGTCGACTTTGAGGCGGCCAGCA
TACAATTGAACCGCGACACGCGTGAGATTCGCTCCAGCAGGCCCATCCGG
CTGATCGAGCTGCGCTGCAACCAGAACAGCCTGGTGGCCCACTACGAGGA
GTTCGAGGAGCCGTATGTGCACCGCTTCCAGCTGCCCGCTTCGCTGTGGC
ATCTCCTCGCGGAGCAGTGCACCCACTACGTTTTCGTGCTGACCACCAGT
GGCGACACCAAGCGGCTATCCTGCGATTCCTCCTAGGATTGCCGCAGCGC
GAGATTTACCAATCAGTCGGCGTTCGAAGCGCATTGGATACGGAACCAAT
CGGAGAGCTAAGGAGAGCAGAAACGCAGCAGAGCAGAGCAGGAAATTAGA
GGACGGAACAGGACAGAACAGGAGCACACGATGGCAGCCAGCGAGGGATC
GGCGGCGCGCATTCAGTTCAAGGCGCTGCGCGGATTTCCGGCCATCGGCG
ATACCGCTGATAAGCTGGAGACACAGGCCTTTCTCGACGCCTCCAAGGAG
ATAGTAACCGTCATAGAGAGCTTCGGCAAACTATTCACACCCGTGATCAG
CGACATGAACGGAAACATAAACAAACTGACGAAAGCCTACGGAGCGGATG
TGGTCAAGTACCAGTATCTGGAGGATCTGATCGTGCTGAACGTGAACGTG
GACGACTTTGCGGCCAACGCGCTGCTCTGGCTGAAGCGCGGCCTGCAGCT
CATATGCACCTTCTTCGAGAACATCTACAACGATGCCCAGGCCAAGGAGG
CACTTAAGCAGCATCTGCAGGACGCGTACGAACGCACATTGAAGCCCTAC
CACGGCTTCATCGTCCAGAGCACAATCAAGATCATCTACAGTTGGGTGCC
CACGCGCAGCCAACTGCTGGGCCAGGGTGTCGCCCAGGCGGAGAACATCG
AGGTGCTGACCAGCTTCCTGCCGCGTATGCGCGCCCATCTGGACTCGATC
GACGCCCTGCTGAAGGCGCACAACTTGGACGATGCACGAAAGGTGTGATC
GTTCCTTAGCCTAGCCTAGCCTAGCTTAGCTTAAATAGCTTATCCTACTT
TATTATTTATGCCCATGTCCAAGTAAAACGCAGAGCCTTACTTATAAACC
AAAAAAAAAAAAAAAA

RH52220.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:44:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG6299-RB 2561 CG6299-RB 1241..2561 330..1650 6590 99.9 Plus
CG6294-RA 2558 CG6294-RA 1238..2558 330..1650 6590 99.9 Plus
CG6299-RA 1013 CG6299-RA 165..1013 802..1650 4245 100 Plus
CG6299-RB 2561 CG6299-RB 2..334 2..334 1665 100 Plus
CG6294-RA 2558 CG6294-RA 1..331 4..334 1655 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:12:43
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 15353890..15354363 330..803 2310 99.2 Plus
chrX 22417052 chrX 15352654..15352986 2..334 1665 100 Plus
chrX 22417052 chrX 15356484..15356755 1379..1650 1315 98.9 Plus
chrX 22417052 chrX 15355672..15355936 802..1066 1310 99.6 Plus
chrX 22417052 chrX 15356162..15356419 1123..1380 1275 99.6 Plus
chrX 22417052 chrX 15356010..15356067 1065..1122 290 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:32:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:12:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15463952..15464425 330..803 2355 99.8 Plus
X 23542271 X 15462713..15463045 2..334 1665 100 Plus
X 23542271 X 15466541..15466813 1379..1651 1365 100 Plus
X 23542271 X 15465729..15465993 802..1066 1325 100 Plus
X 23542271 X 15466219..15466476 1123..1380 1290 100 Plus
X 23542271 X 15466067..15466124 1065..1122 290 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:17:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 15472050..15472523 330..803 2355 99.7 Plus
X 23527363 X 15470811..15471143 2..334 1665 100 Plus
X 23527363 X 15474639..15474911 1379..1651 1365 100 Plus
X 23527363 X 15473827..15474091 802..1066 1325 100 Plus
X 23527363 X 15474317..15474574 1123..1380 1290 100 Plus
X 23527363 X 15474165..15474222 1065..1122 290 100 Plus
Blast to na_te.dros performed on 2019-03-16 00:12:41 has no hits.

RH52220.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:13:30 Download gff for RH52220.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 15356162..15356419 1123..1380 99 -> Plus
chrX 15352653..15352996 1..350 96 -> Plus
chrX 15353911..15354363 351..803 99 -> Plus
chrX 15355674..15355730 804..860 100 == Plus
chrX 15355794..15355936 924..1066 100 -> Plus
chrX 15356012..15356067 1067..1122 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:49:16 Download gff for RH52220.complete
Subject Subject Range Query Range Percent Splice Strand
CG6299-RA 1..618 931..1548 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:18:43 Download gff for RH52220.complete
Subject Subject Range Query Range Percent Splice Strand
CG6299-RA 1..618 931..1548 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:51:22 Download gff for RH52220.complete
Subject Subject Range Query Range Percent Splice Strand
CG6299-RB 1..618 931..1548 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:09:51 Download gff for RH52220.complete
Subject Subject Range Query Range Percent Splice Strand
CG6299-RA 1..618 931..1548 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:01:35 Download gff for RH52220.complete
Subject Subject Range Query Range Percent Splice Strand
CG6299-RC 1..618 931..1548 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:43:46 Download gff for RH52220.complete
Subject Subject Range Query Range Percent Splice Strand
CG6299-RB 2..1658 2..1649 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:18:43 Download gff for RH52220.complete
Subject Subject Range Query Range Percent Splice Strand
CG6294-RA 1..329 4..332 100 <- Plus
CG6294-RA 1241..2558 333..1650 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:51:22 Download gff for RH52220.complete
Subject Subject Range Query Range Percent Splice Strand
CG6294-RA 1..322 11..332 100 <- Plus
CG6294-RA 1234..2551 333..1650 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:09:51 Download gff for RH52220.complete
Subject Subject Range Query Range Percent Splice Strand
CG6299-RB 2..1658 2..1649 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:01:35 Download gff for RH52220.complete
Subject Subject Range Query Range Percent Splice Strand
CG6294-RA 1..322 11..332 100 <- Plus
CG6294-RA 1234..2551 333..1650 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:13:30 Download gff for RH52220.complete
Subject Subject Range Query Range Percent Splice Strand
X 15466219..15466476 1123..1380 100 -> Plus
X 15463955..15464425 333..803 99 -> Plus
X 15462712..15463043 1..332 99 -> Plus
X 15465731..15465993 804..1066 100 -> Plus
X 15466069..15466124 1067..1122 100 -> Plus
X 15466543..15466812 1381..1650 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:13:30 Download gff for RH52220.complete
Subject Subject Range Query Range Percent Splice Strand
X 15466219..15466476 1123..1380 100 -> Plus
X 15463955..15464425 333..803 99 -> Plus
X 15462712..15463043 1..332 99 -> Plus
X 15465731..15465993 804..1066 100 -> Plus
X 15466069..15466124 1067..1122 100 -> Plus
X 15466543..15466812 1381..1650 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:13:30 Download gff for RH52220.complete
Subject Subject Range Query Range Percent Splice Strand
X 15466219..15466476 1123..1380 100 -> Plus
X 15463955..15464425 333..803 99 -> Plus
X 15462712..15463043 1..332 99 -> Plus
X 15465731..15465993 804..1066 100 -> Plus
X 15466069..15466124 1067..1122 100 -> Plus
X 15466543..15466812 1381..1650 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:51:22 Download gff for RH52220.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15356745..15357076 1..332 99 -> Plus
arm_X 15357988..15358458 333..803 99 -> Plus
arm_X 15359764..15360026 804..1066 100 -> Plus
arm_X 15360102..15360157 1067..1122 100 -> Plus
arm_X 15360252..15360509 1123..1380 100 -> Plus
arm_X 15360576..15360845 1381..1650 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:41:58 Download gff for RH52220.complete
Subject Subject Range Query Range Percent Splice Strand
X 15473829..15474091 804..1066 100 -> Plus
X 15474167..15474222 1067..1122 100 -> Plus
X 15474317..15474574 1123..1380 100 -> Plus
X 15474641..15474910 1381..1650 100   Plus
X 15470810..15471141 1..332 99 -> Plus
X 15472053..15472523 333..803 99 -> Plus

RH52220.pep Sequence

Translation from 930 to 1547

> RH52220.pep
MAASEGSAARIQFKALRGFPAIGDTADKLETQAFLDASKEIVTVIESFGK
LFTPVISDMNGNINKLTKAYGADVVKYQYLEDLIVLNVNVDDFAANALLW
LKRGLQLICTFFENIYNDAQAKEALKQHLQDAYERTLKPYHGFIVQSTIK
IIYSWVPTRSQLLGQGVAQAENIEVLTSFLPRMRAHLDSIDALLKAHNLD
DARKV*

RH52220.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:55:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22258-PA 202 GF22258-PA 1..202 1..205 956 88.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:55:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17882-PA 204 GG17882-PA 1..204 1..205 1039 96.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:55:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12320-PA 197 GH12320-PA 4..197 9..205 895 84.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:16:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG6299-PE 205 CG6299-PE 1..205 1..205 1035 100 Plus
CG6299-PD 205 CG6299-PD 1..205 1..205 1035 100 Plus
CG6299-PC 205 CG6299-PC 1..205 1..205 1035 100 Plus
CG6299-PA 205 CG6299-PA 1..205 1..205 1035 100 Plus
CG6299-PB 205 CG6299-PB 1..205 1..205 1035 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:55:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21465-PA 198 GI21465-PA 4..198 9..205 884 82.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:55:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13416-PA 199 GL13416-PA 3..196 6..201 782 73.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:55:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19499-PA 199 GA19499-PA 3..197 6..202 785 73.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:55:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19567-PA 204 GM19567-PA 1..204 1..205 1048 98 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:55:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24819-PA 189 GD24819-PA 1..189 1..205 936 90.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:55:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16485-PA 197 GJ16485-PA 4..197 9..205 912 86.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:55:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25440-PA 222 GK25440-PA 26..222 7..205 904 84.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:55:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17187-PA 204 GE17187-PA 1..204 1..205 1035 96.1 Plus

RH52220.hyp Sequence

Translation from 930 to 1547

> RH52220.hyp
MAASEGSAARIQFKALRGFPAIGDTADKLETQAFLDASKEIVTVIESFGK
LFTPVISDMNGNINKLTKAYGADVVKYQYLEDLIVLNVNVDDFAANALLW
LKRGLQLICTFFENIYNDAQAKEALKQHLQDAYERTLKPYHGFIVQSTIK
IIYSWVPTRSQLLGQGVAQAENIEVLTSFLPRMRAHLDSIDALLKAHNLD
DARKV*

RH52220.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:00:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG6299-PE 205 CG6299-PE 1..205 1..205 1035 100 Plus
CG6299-PD 205 CG6299-PD 1..205 1..205 1035 100 Plus
CG6299-PC 205 CG6299-PC 1..205 1..205 1035 100 Plus
CG6299-PA 205 CG6299-PA 1..205 1..205 1035 100 Plus
CG6299-PB 205 CG6299-PB 1..205 1..205 1035 100 Plus