BDGP Sequence Production Resources |
Search the DGRC for RH52364
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 523 |
Well: | 64 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Scp2-RA |
Protein status: | RH52364.pep: gold |
Preliminary Size: | 1267 |
Sequenced Size: | 1301 |
Gene | Date | Evidence |
---|---|---|
CG14904 | 2002-01-01 | Sim4 clustering to Release 2 |
CG14904 | 2002-02-26 | Blastp of sequenced clone |
CG14904 | 2003-01-01 | Sim4 clustering to Release 3 |
Scp2 | 2008-04-29 | Release 5.5 accounting |
Scp2 | 2008-08-15 | Release 5.9 accounting |
Scp2 | 2008-12-18 | 5.12 accounting |
1301 bp (1301 high quality bases) assembled on 2002-02-26
GenBank Submission: AY089680
> RH52364.complete GATCATCACAAGACGGCCAACCGCGCTGCCGAGCAGACGAGTCCAGTTCG AGAGGGTACCAAAATTTAATCAGAAAGTGTAGAGTCAGTTTAGAAGCAAC GTTCCCCATTTCCGGTTGCAACTGTGGTGAGCCAATATAAGCTCAATAAA GAAAACAACCAGCGGTAAATCAAACACACAAAAAAAAAACCAACACAATA ATGTCGATCTCCGATTTCCGCAAAAAGAAGCTGCTTTTTCTGTTCAATGT GTTCTTTGATGTGAACCAAAGCGGCGAAATCGACGTTAAGGACTTCGAGC TGGCCATCGAGCGCGTTTGCCAACTGCGCGGCTGGCAGAAGGACACGCCG AAGAACAAGGAGACCTACGACCTGATGATGGAAATCTGGACTGGCCTGCG CTCCAAGGCCGACAAGGACAACGATGGACAGGTCAGCGTGGACGAGTGGT GCAACATGTGGGACGCCTATGCCAAGGATCCCAGCAGCGTGATGGACTGG CAGAATGCCTACATGAACTTCATGTTCGACCTGGAGGATGCCTCGCACGA TGGAGGCATCGATGTGACCGAATTCACGCTGGTCTGCTCCAGCTATGGCC TGGAGAAGACCGAGTGTGAGGAAGCCTTTGCGAAGATGTCTCAGGGGCAG AGCGAGGTCACCCGGGAGCAGTTCGCCGCCTTGTGGAAGGAGTACTTCGC CGCCGAGGATGTGAATGCGCCTGGCAACTACATTTTTGGAAAGACCAGTT TCTAAGACCCAGCCAAATAAGAACAGCTCCGATACTGGACATACTGAACA AATGCAACAAGTGAAATTATTATTAAAATTAATATTATATATCTATTGTC GACAGGGGAGGCAGATCTCAACCCTCCCGACTTGATGATCCGTCGTTGTT AGTTGAGTGTTGTTTTCTCTCCAAGAATCTCAAATTTTGCCCAATTCAAT GTTCTAATTTAGTAGCGTAATCTGTCTGCAAACTATTTATATTTTATATA CCAAGGCTTCGAGTAATGTGCAAGCTGTAGTATCTCTACACAAACACATA TATGCAAAAGTGTACCTTTACGAACTACGACTATATCTAGCGATGATATC AATTACGAGGTAGGATCTCCCACAGATCCGTATCAATGTGGTGCGTAAAT TAAATCAATTAAACTGTCAAATTGTTATGTGTGTGTAGTCGTCGTTTATC GTCTCGCATCTATGGCGTATAAATTTAAATGTAAATGTAAAGTGTTCCAA GAAATTACAATAATAAAATCAAAGTATCTATACAAGAAAAAAAAAAAAAA A
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Scp2-RA | 1326 | Scp2-RA | 34..1316 | 4..1285 | 6375 | 99.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 12399076..12399932 | 1285..429 | 4255 | 99.8 | Minus |
chr3R | 27901430 | chr3R | 12403525..12403683 | 258..101 | 745 | 99.4 | Minus |
chr3R | 27901430 | chr3R | 12401456..12401579 | 433..310 | 620 | 100 | Minus |
chr3R | 27901430 | chr3R | 12408101..12408198 | 101..4 | 490 | 100 | Minus |
chr3R | 27901430 | chr3R | 12401856..12401909 | 311..258 | 270 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 16574541..16575397 | 1285..429 | 4285 | 100 | Minus |
3R | 32079331 | 3R | 16578990..16579148 | 258..101 | 745 | 99.4 | Minus |
3R | 32079331 | 3R | 16576921..16577044 | 433..310 | 620 | 100 | Minus |
3R | 32079331 | 3R | 16583564..16583661 | 101..4 | 490 | 100 | Minus |
3R | 32079331 | 3R | 16577321..16577374 | 311..258 | 270 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 16315372..16316228 | 1285..429 | 4285 | 100 | Minus |
3R | 31820162 | 3R | 16319821..16319979 | 258..101 | 755 | 99.3 | Minus |
3R | 31820162 | 3R | 16317752..16317875 | 433..310 | 620 | 100 | Minus |
3R | 31820162 | 3R | 16324395..16324492 | 101..4 | 490 | 100 | Minus |
3R | 31820162 | 3R | 16318152..16318205 | 311..258 | 270 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dbuz\BuT2 | 2775 | Dbuz\BuT2 BUT2 2775bp | 289..351 | 1218..1282 | 112 | 67.7 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 12399075..12399929 | 432..1286 | 99 | <- | Minus |
chr3R | 12401458..12401577 | 312..431 | 100 | <- | Minus |
chr3R | 12401856..12401908 | 259..311 | 100 | <- | Minus |
chr3R | 12403525..12403682 | 102..258 | 99 | <- | Minus |
chr3R | 12408101..12408201 | 1..101 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scp2-RA | 1..555 | 201..755 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scp2-RA | 1..555 | 201..755 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scp2-RA | 1..555 | 201..755 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scp2-RA | 1..555 | 201..755 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scp2-RA | 1..555 | 201..755 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scp2-RA | 1..1282 | 5..1286 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scp2-RA | 1..1280 | 5..1283 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scp2-RA | 1..1283 | 2..1283 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scp2-RA | 1..1282 | 5..1286 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scp2-RA | 1..1283 | 2..1283 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 16574540..16575394 | 432..1286 | 99 | <- | Minus |
3R | 16576923..16577042 | 312..431 | 100 | <- | Minus |
3R | 16577321..16577373 | 259..311 | 100 | <- | Minus |
3R | 16578990..16579147 | 102..258 | 99 | <- | Minus |
3R | 16583564..16583664 | 1..101 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 16574540..16575394 | 432..1286 | 99 | <- | Minus |
3R | 16576923..16577042 | 312..431 | 100 | <- | Minus |
3R | 16577321..16577373 | 259..311 | 100 | <- | Minus |
3R | 16578990..16579147 | 102..258 | 99 | <- | Minus |
3R | 16583564..16583664 | 1..101 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 16574540..16575394 | 432..1286 | 99 | <- | Minus |
3R | 16576923..16577042 | 312..431 | 100 | <- | Minus |
3R | 16577321..16577373 | 259..311 | 100 | <- | Minus |
3R | 16578990..16579147 | 102..258 | 99 | <- | Minus |
3R | 16583564..16583664 | 1..101 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 12403043..12403095 | 259..311 | 100 | <- | Minus |
arm_3R | 12404712..12404869 | 102..258 | 99 | <- | Minus |
arm_3R | 12409286..12409386 | 1..101 | 99 | Minus | |
arm_3R | 12400262..12401116 | 432..1286 | 99 | <- | Minus |
arm_3R | 12402645..12402764 | 312..431 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 16315371..16316225 | 432..1286 | 99 | <- | Minus |
3R | 16317754..16317873 | 312..431 | 100 | <- | Minus |
3R | 16318152..16318204 | 259..311 | 100 | <- | Minus |
3R | 16319821..16319978 | 102..258 | 99 | <- | Minus |
3R | 16324395..16324495 | 1..101 | 99 | Minus |
Translation from 200 to 754
> RH52364.pep MSISDFRKKKLLFLFNVFFDVNQSGEIDVKDFELAIERVCQLRGWQKDTP KNKETYDLMMEIWTGLRSKADKDNDGQVSVDEWCNMWDAYAKDPSSVMDW QNAYMNFMFDLEDASHDGGIDVTEFTLVCSSYGLEKTECEEAFAKMSQGQ SEVTREQFAALWKEYFAAEDVNAPGNYIFGKTSF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17935-PA | 184 | GF17935-PA | 1..184 | 1..184 | 935 | 93.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16823-PA | 184 | GG16823-PA | 1..184 | 1..184 | 974 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20505-PA | 184 | GH20505-PA | 1..184 | 1..184 | 921 | 92.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Scp2-PA | 184 | CG14904-PA | 1..184 | 1..184 | 990 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10386-PA | 184 | GI10386-PA | 1..184 | 1..184 | 943 | 94.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL27293-PA | 184 | GL27293-PA | 1..184 | 1..184 | 948 | 95.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA13342-PA | 184 | GA13342-PA | 1..184 | 1..184 | 948 | 95.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15421-PA | 184 | GM15421-PA | 1..184 | 1..184 | 974 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20278-PA | 184 | GD20278-PA | 1..184 | 1..184 | 974 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22847-PA | 184 | GJ22847-PA | 1..184 | 1..184 | 932 | 93.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22835-PA | 185 | GK22835-PA | 1..184 | 1..184 | 931 | 93.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE26142-PA | 184 | GE26142-PA | 1..184 | 1..184 | 974 | 98.9 | Plus |
Translation from 200 to 754
> RH52364.hyp MSISDFRKKKLLFLFNVFFDVNQSGEIDVKDFELAIERVCQLRGWQKDTP KNKETYDLMMEIWTGLRSKADKDNDGQVSVDEWCNMWDAYAKDPSSVMDW QNAYMNFMFDLEDASHDGGIDVTEFTLVCSSYGLEKTECEEAFAKMSQGQ SEVTREQFAALWKEYFAAEDVNAPGNYIFGKTSF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Scp2-PA | 184 | CG14904-PA | 1..184 | 1..184 | 990 | 100 | Plus |