BDGP Sequence Production Resources |
Search the DGRC for RH52604
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 526 |
Well: | 4 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG10948-RB |
Protein status: | RH52604.pep: gold |
Sequenced Size: | 2771 |
Gene | Date | Evidence |
---|---|---|
CG10948 | 2011-09-07 | Manual selection by Sue Celniker |
2771 bp assembled on 2011-11-04
GenBank Submission: BT132765.1
> RH52604.complete AAGTTTTTTTTTATACATACCTGTCGTACAATTACTGGGGCGTTAATATG CTACCGCTCTTTGGGACCATGCCGAATGGCGTCAGTTTGCCAAATCACCC GAATTTCCTCAACCAATTGGCAGCTGCAATTTCCACGGCGGCCTCGAGCA CATCTGTCGTGGGAAATCCCTCTTCGCCCCCCAAACAGATCCAGAATAAG ATGGCAAAACAACAACAACAACCACAGGGCAGTGCGCCCATGGATCTGGA GAATGAGAACGAACACTCTGCGGATGTGAGCTCCTCGACGATGCACAAGG AACCCAAGTTGCAGGCCACATCCAACTCGCTCACTCTGCCCGATTCGACG CAACTATACCTGAATGGCTTGGTGCACACACCACCTGGATATCTGTATTT TCCGGCCACCCAAGCGGGTGGTGCTACTGCACCCGGCAATCCATCCTCGG CTGCAGGGGGATCCACGCCGGCAGCTTCAGCAAACAGCACCGCCAATGCG CAAATGCTCATGGATCCTACGGCCATGATGGCGGCGGCGATGCAACAAAT GCAACAGATGCACTATGCAGCGGCAGCAGCAGCCGGAATGACCACAGAAA CCGGAGCTGGACTAGAAGCAACTCTTAATGCGGATGGCGTTACACCAGCT GGCCTCAAGGAGGTGATCAAGACCAAGAACTGCATCCTGTTTCCACCTAA TCCGAACGCACCTCCTCCCACAATAAGGGAGCGACCACCAGGATGCCGGA CGGTGTTTGTGGGTGGACTGCCGGAAAACATAACCGAAGAAGTGATCCGG GAGATCTTCGAATCATGCGGCGAGATCACCACATTGCGCATGTCCAAGAA GAACTTTTGCCATATTCGCTACCGCCAAGAGGGTGCCATAGATAGGGCCA TCTACCTATCCGGCTATAGATTGCGTATATCAGCGCTAAATGAACCTCCC AACTTTGGACGCCTGCATGTGGACTACGCACAGGCACGGGATGATCAGTA TGATTACGAGTGTCGACAGAGACAGCATCAGAGGGAACAGCGTCATCGTG AGCGCATGTCGATGGACAGGATGCGATCGCAGTCGCCGCCACCAATACCG CACTACACGGATCACGAGGCTACTACTGTTGCGGAGCACCTACGCACCAA CGAGACTTTTGTAAAGGCCATTCAAACGATTACCGCGTGGCTGGAGCGGG GAGATTGCACTAAGCGGAACGCCAATGTCTTCTATTCGATGATCCAGAGC ACTCATGCCCATGTACGAAGACTCCATGCAGACAAACTGCAACTGGAGGA GGATCTAAAGAAGGCCAGAGACAGCTATCGCAACCAAATGGGCACCATGT CCACGCAATGAACTTCGAACTGTCCAGATCACAGATGATGATGAAATGGA AATCTCCGACGATGAGCGGGACTACGATAGACGCGGACACAGCGCCAAGC GAATTCGCTACGACAGTGATGGCTTAAAAGACGAGAACGACTCTCTACGC TGTCAACTGGAGGCCATTCGTCACGAGATGACGCTGGAGCGCAGTGATTA TGTTCAGCGCGAAAAGCAGATAAAGGTACTTCAGGAAACCATTCGCAACA TGCAGACCCAGTTGCTGCAGACGAAGCTACGCGAACAGAAGGACAACAAG ACCATTGAGCAGTTGGAACGAAATCTCAAGGATGCCGGCATTAAGCAACT TCTGTTGAAGACCAAAATTAAGGAAACAGTGGACAAATTAAGGGACAAAG AGGCAAATAGCGCTGGAGCCTCAAATGCTTCAAACGCCTCAAATCTCGAC TACAGCAGCGGGGATTCGTGTAGCCGGGAAGGCACAGAAATTATCCGCCC ACAGGCAGAACCGGAAATAATTGATATCGATAAAGTGGATGATGATGTCC GCATCATAGAGCACCAAAGCGGTGTGGTGGAGATACACGAGATCGAGGAC GATGAAAAGCAGGAGCCCGCTAAGGATTCTACGAAAAGCAAAGCAAATGA GTCAATTATGGAAAATGTTTCAAAGTCGAATCATGAGGAGACTATAAACA AAAGCAGCAAAGAGCAAATCCCAACAGTGGCCGCGGAAGAGGTGACTTTC AAGTCGCTAGTCTTGTCTGAAGCCAAGATAATTGCTCTGGCCTCAGCCTA TCTGGTGCTGCATCCCTATGGCGTTGAAATCGCCAACATAGCCAGTTACT TAAGCGAAATGCTGCGCAATAACGCTGCCCCCAGTAACCATGATGATCTA GCCAATATACTCGGAAAGTACACAAATCTCTTCAAGCCGGAAAAGGAGAA GTGGAGATTCTGTGGCTTCAGCGAACCAACTGAATCTCAGACGGAGTCAA AGTGAGGGGATGAATGCGGAATGTAGACTCGAATAAGATGACAATTAAAT GCTTTAATTATCTTACAACTATATCATAATGAGTAGCGAGTAAGCGGAGG AAAGTGAAATGTTAACCAAAGGAAAGACGCAAGTTTTTCAATGAAATCAC GACTTAATGAGACCAGATCCAGGTTTAAGGGCAAGTACTCGAAGTTAACT CAATCGGAAGAAAGACACCACAAACTAACTACCGTTTCAATTATTTAAAT AACTCAACCTAAAGAATATATATACACTTAAGCTAAATGAATTCAATATA TACAAAATATATATACATCAATATTTTAAATAAACTGAGAGGCAGAAGGT CGCGTTGCTTTTGTTGAACGGAAGCGAAAGAATGGAACCAAATAAATTGT ATGCTAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 12838723..12839450 | 1360..633 | 3580 | 99.5 | Minus |
chr3L | 24539361 | chr3L | 12834613..12835278 | 2755..2090 | 3330 | 100 | Minus |
chr3L | 24539361 | chr3L | 12835407..12836020 | 2093..1480 | 3010 | 99.3 | Minus |
chr3L | 24539361 | chr3L | 12839511..12840092 | 633..52 | 2835 | 99.1 | Minus |
chr3L | 24539361 | chr3L | 12836087..12836205 | 1478..1360 | 595 | 100 | Minus |
chr3L | 24539361 | chr3L | 12840385..12840434 | 51..2 | 250 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 12848369..12849096 | 1360..633 | 3640 | 100 | Minus |
3L | 28110227 | 3L | 12844258..12844926 | 2758..2090 | 3345 | 100 | Minus |
3L | 28110227 | 3L | 12845055..12845668 | 2093..1480 | 3070 | 100 | Minus |
3L | 28110227 | 3L | 12849158..12849739 | 633..52 | 2910 | 100 | Minus |
3L | 28110227 | 3L | 12845733..12845853 | 1480..1360 | 605 | 100 | Minus |
3L | 28110227 | 3L | 12850032..12850081 | 51..2 | 250 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 12841469..12842196 | 1360..633 | 3640 | 100 | Minus |
3L | 28103327 | 3L | 12837358..12838026 | 2758..2090 | 3345 | 100 | Minus |
3L | 28103327 | 3L | 12838155..12838768 | 2093..1480 | 3070 | 100 | Minus |
3L | 28103327 | 3L | 12842258..12842839 | 633..52 | 2910 | 100 | Minus |
3L | 28103327 | 3L | 12838833..12838953 | 1480..1360 | 605 | 100 | Minus |
3L | 28103327 | 3L | 12843132..12843181 | 51..2 | 250 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2293..2397 | 520..622 | 122 | 62.3 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 12834613..12835276 | 2092..2755 | 100 | <- | Minus |
chr3L | 12835409..12836020 | 1480..2091 | 99 | <- | Minus |
chr3L | 12836086..12836205 | 1360..1479 | 99 | <- | Minus |
chr3L | 12838724..12839449 | 634..1359 | 99 | <- | Minus |
chr3L | 12839511..12840092 | 52..633 | 99 | <- | Minus |
chr3L | 12840385..12840434 | 1..51 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10948-RB | 1..1314 | 48..1361 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10948-RB | 1..1314 | 48..1361 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10948-RB | 1..1314 | 48..1361 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10948-RB | 33..2787 | 1..2755 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10948-RB | 36..2790 | 1..2755 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10948-RB | 36..2790 | 1..2755 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 12844261..12844924 | 2092..2755 | 100 | <- | Minus |
3L | 12845057..12845668 | 1480..2091 | 100 | <- | Minus |
3L | 12845734..12845853 | 1360..1479 | 100 | <- | Minus |
3L | 12848370..12849095 | 634..1359 | 100 | <- | Minus |
3L | 12849158..12849739 | 52..633 | 100 | <- | Minus |
3L | 12850032..12850081 | 1..51 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 12844261..12844924 | 2092..2755 | 100 | <- | Minus |
3L | 12845057..12845668 | 1480..2091 | 100 | <- | Minus |
3L | 12845734..12845853 | 1360..1479 | 100 | <- | Minus |
3L | 12848370..12849095 | 634..1359 | 100 | <- | Minus |
3L | 12849158..12849739 | 52..633 | 100 | <- | Minus |
3L | 12850032..12850081 | 1..51 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 12844261..12844924 | 2092..2755 | 100 | <- | Minus |
3L | 12845057..12845668 | 1480..2091 | 100 | <- | Minus |
3L | 12845734..12845853 | 1360..1479 | 100 | <- | Minus |
3L | 12848370..12849095 | 634..1359 | 100 | <- | Minus |
3L | 12849158..12849739 | 52..633 | 100 | <- | Minus |
3L | 12850032..12850081 | 1..51 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 12837361..12838024 | 2092..2755 | 100 | <- | Minus |
arm_3L | 12838157..12838768 | 1480..2091 | 100 | <- | Minus |
arm_3L | 12838834..12838953 | 1360..1479 | 100 | <- | Minus |
arm_3L | 12841470..12842195 | 634..1359 | 100 | <- | Minus |
arm_3L | 12842258..12842839 | 52..633 | 100 | <- | Minus |
arm_3L | 12843132..12843181 | 1..51 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 12837361..12838024 | 2092..2755 | 100 | <- | Minus |
3L | 12838157..12838768 | 1480..2091 | 100 | <- | Minus |
3L | 12838834..12838953 | 1360..1479 | 100 | <- | Minus |
3L | 12841470..12842195 | 634..1359 | 100 | <- | Minus |
3L | 12842258..12842839 | 52..633 | 100 | <- | Minus |
3L | 12843132..12843181 | 1..51 | 98 | Minus |
Translation from 2 to 1360
> RH52604.hyp VFFYTYLSYNYWGVNMLPLFGTMPNGVSLPNHPNFLNQLAAAISTAASST SVVGNPSSPPKQIQNKMAKQQQQPQGSAPMDLENENEHSADVSSSTMHKE PKLQATSNSLTLPDSTQLYLNGLVHTPPGYLYFPATQAGGATAPGNPSSA AGGSTPAASANSTANAQMLMDPTAMMAAAMQQMQQMHYAAAAAAGMTTET GAGLEATLNADGVTPAGLKEVIKTKNCILFPPNPNAPPPTIRERPPGCRT VFVGGLPENITEEVIREIFESCGEITTLRMSKKNFCHIRYRQEGAIDRAI YLSGYRLRISALNEPPNFGRLHVDYAQARDDQYDYECRQRQHQREQRHRE RMSMDRMRSQSPPPIPHYTDHEATTVAEHLRTNETFVKAIQTITAWLERG DCTKRNANVFYSMIQSTHAHVRRLHADKLQLEEDLKKARDSYRNQMGTMS TQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG10948-PC | 804 | CG10948-PC | 1..437 | 16..452 | 2289 | 100 | Plus |
CG10948-PB | 437 | CG10948-PB | 1..437 | 16..452 | 2289 | 100 | Plus |
CG10948-PD | 797 | CG10948-PD | 1..430 | 23..452 | 2252 | 100 | Plus |
Translation from 2 to 1360
> RH52604.pep VFFYTYLSYNYWGVNMLPLFGTMPNGVSLPNHPNFLNQLAAAISTAASST SVVGNPSSPPKQIQNKMAKQQQQPQGSAPMDLENENEHSADVSSSTMHKE PKLQATSNSLTLPDSTQLYLNGLVHTPPGYLYFPATQAGGATAPGNPSSA AGGSTPAASANSTANAQMLMDPTAMMAAAMQQMQQMHYAAAAAAGMTTET GAGLEATLNADGVTPAGLKEVIKTKNCILFPPNPNAPPPTIRERPPGCRT VFVGGLPENITEEVIREIFESCGEITTLRMSKKNFCHIRYRQEGAIDRAI YLSGYRLRISALNEPPNFGRLHVDYAQARDDQYDYECRQRQHQREQRHRE RMSMDRMRSQSPPPIPHYTDHEATTVAEHLRTNETFVKAIQTITAWLERG DCTKRNANVFYSMIQSTHAHVRRLHADKLQLEEDLKKARDSYRNQMGTMS TQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10863-PA | 795 | GF10863-PA | 1..432 | 23..452 | 1615 | 81.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13800-PA | 791 | GG13800-PA | 1..430 | 23..452 | 1910 | 96.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14491-PA | 803 | GH14491-PA | 1..433 | 23..452 | 1494 | 74.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG10948-PC | 804 | CG10948-PC | 1..437 | 16..452 | 2289 | 100 | Plus |
CG10948-PB | 437 | CG10948-PB | 1..437 | 16..452 | 2289 | 100 | Plus |
CG10948-PD | 797 | CG10948-PD | 1..430 | 23..452 | 2252 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13647-PA | 801 | GI13647-PA | 1..434 | 23..452 | 1469 | 69.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22894-PA | 779 | GL22894-PA | 1..422 | 23..452 | 1428 | 75.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10660-PA | 801 | GA10660-PA | 1..444 | 16..452 | 1512 | 77.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24626-PA | 797 | GM24626-PA | 1..430 | 23..452 | 2301 | 97.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12692-PA | 783 | GD12692-PA | 1..430 | 23..452 | 2324 | 98.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13981-PA | 799 | GJ13981-PA | 1..433 | 23..452 | 1533 | 71.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17355-PA | 868 | GK17355-PA | 1..481 | 23..452 | 1350 | 69 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE20093-PA | 796 | GE20093-PA | 1..430 | 23..452 | 1920 | 94.7 | Plus |