Clone RH52604 Report

Search the DGRC for RH52604

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:526
Well:4
Vector:pFlc-1
Associated Gene/TranscriptCG10948-RB
Protein status:RH52604.pep: gold
Sequenced Size:2771

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10948 2011-09-07 Manual selection by Sue Celniker

Clone Sequence Records

RH52604.complete Sequence

2771 bp assembled on 2011-11-04

GenBank Submission: BT132765.1

> RH52604.complete
AAGTTTTTTTTTATACATACCTGTCGTACAATTACTGGGGCGTTAATATG
CTACCGCTCTTTGGGACCATGCCGAATGGCGTCAGTTTGCCAAATCACCC
GAATTTCCTCAACCAATTGGCAGCTGCAATTTCCACGGCGGCCTCGAGCA
CATCTGTCGTGGGAAATCCCTCTTCGCCCCCCAAACAGATCCAGAATAAG
ATGGCAAAACAACAACAACAACCACAGGGCAGTGCGCCCATGGATCTGGA
GAATGAGAACGAACACTCTGCGGATGTGAGCTCCTCGACGATGCACAAGG
AACCCAAGTTGCAGGCCACATCCAACTCGCTCACTCTGCCCGATTCGACG
CAACTATACCTGAATGGCTTGGTGCACACACCACCTGGATATCTGTATTT
TCCGGCCACCCAAGCGGGTGGTGCTACTGCACCCGGCAATCCATCCTCGG
CTGCAGGGGGATCCACGCCGGCAGCTTCAGCAAACAGCACCGCCAATGCG
CAAATGCTCATGGATCCTACGGCCATGATGGCGGCGGCGATGCAACAAAT
GCAACAGATGCACTATGCAGCGGCAGCAGCAGCCGGAATGACCACAGAAA
CCGGAGCTGGACTAGAAGCAACTCTTAATGCGGATGGCGTTACACCAGCT
GGCCTCAAGGAGGTGATCAAGACCAAGAACTGCATCCTGTTTCCACCTAA
TCCGAACGCACCTCCTCCCACAATAAGGGAGCGACCACCAGGATGCCGGA
CGGTGTTTGTGGGTGGACTGCCGGAAAACATAACCGAAGAAGTGATCCGG
GAGATCTTCGAATCATGCGGCGAGATCACCACATTGCGCATGTCCAAGAA
GAACTTTTGCCATATTCGCTACCGCCAAGAGGGTGCCATAGATAGGGCCA
TCTACCTATCCGGCTATAGATTGCGTATATCAGCGCTAAATGAACCTCCC
AACTTTGGACGCCTGCATGTGGACTACGCACAGGCACGGGATGATCAGTA
TGATTACGAGTGTCGACAGAGACAGCATCAGAGGGAACAGCGTCATCGTG
AGCGCATGTCGATGGACAGGATGCGATCGCAGTCGCCGCCACCAATACCG
CACTACACGGATCACGAGGCTACTACTGTTGCGGAGCACCTACGCACCAA
CGAGACTTTTGTAAAGGCCATTCAAACGATTACCGCGTGGCTGGAGCGGG
GAGATTGCACTAAGCGGAACGCCAATGTCTTCTATTCGATGATCCAGAGC
ACTCATGCCCATGTACGAAGACTCCATGCAGACAAACTGCAACTGGAGGA
GGATCTAAAGAAGGCCAGAGACAGCTATCGCAACCAAATGGGCACCATGT
CCACGCAATGAACTTCGAACTGTCCAGATCACAGATGATGATGAAATGGA
AATCTCCGACGATGAGCGGGACTACGATAGACGCGGACACAGCGCCAAGC
GAATTCGCTACGACAGTGATGGCTTAAAAGACGAGAACGACTCTCTACGC
TGTCAACTGGAGGCCATTCGTCACGAGATGACGCTGGAGCGCAGTGATTA
TGTTCAGCGCGAAAAGCAGATAAAGGTACTTCAGGAAACCATTCGCAACA
TGCAGACCCAGTTGCTGCAGACGAAGCTACGCGAACAGAAGGACAACAAG
ACCATTGAGCAGTTGGAACGAAATCTCAAGGATGCCGGCATTAAGCAACT
TCTGTTGAAGACCAAAATTAAGGAAACAGTGGACAAATTAAGGGACAAAG
AGGCAAATAGCGCTGGAGCCTCAAATGCTTCAAACGCCTCAAATCTCGAC
TACAGCAGCGGGGATTCGTGTAGCCGGGAAGGCACAGAAATTATCCGCCC
ACAGGCAGAACCGGAAATAATTGATATCGATAAAGTGGATGATGATGTCC
GCATCATAGAGCACCAAAGCGGTGTGGTGGAGATACACGAGATCGAGGAC
GATGAAAAGCAGGAGCCCGCTAAGGATTCTACGAAAAGCAAAGCAAATGA
GTCAATTATGGAAAATGTTTCAAAGTCGAATCATGAGGAGACTATAAACA
AAAGCAGCAAAGAGCAAATCCCAACAGTGGCCGCGGAAGAGGTGACTTTC
AAGTCGCTAGTCTTGTCTGAAGCCAAGATAATTGCTCTGGCCTCAGCCTA
TCTGGTGCTGCATCCCTATGGCGTTGAAATCGCCAACATAGCCAGTTACT
TAAGCGAAATGCTGCGCAATAACGCTGCCCCCAGTAACCATGATGATCTA
GCCAATATACTCGGAAAGTACACAAATCTCTTCAAGCCGGAAAAGGAGAA
GTGGAGATTCTGTGGCTTCAGCGAACCAACTGAATCTCAGACGGAGTCAA
AGTGAGGGGATGAATGCGGAATGTAGACTCGAATAAGATGACAATTAAAT
GCTTTAATTATCTTACAACTATATCATAATGAGTAGCGAGTAAGCGGAGG
AAAGTGAAATGTTAACCAAAGGAAAGACGCAAGTTTTTCAATGAAATCAC
GACTTAATGAGACCAGATCCAGGTTTAAGGGCAAGTACTCGAAGTTAACT
CAATCGGAAGAAAGACACCACAAACTAACTACCGTTTCAATTATTTAAAT
AACTCAACCTAAAGAATATATATACACTTAAGCTAAATGAATTCAATATA
TACAAAATATATATACATCAATATTTTAAATAAACTGAGAGGCAGAAGGT
CGCGTTGCTTTTGTTGAACGGAAGCGAAAGAATGGAACCAAATAAATTGT
ATGCTAAAAAAAAAAAAAAAA

RH52604.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:15:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 12838723..12839450 1360..633 3580 99.5 Minus
chr3L 24539361 chr3L 12834613..12835278 2755..2090 3330 100 Minus
chr3L 24539361 chr3L 12835407..12836020 2093..1480 3010 99.3 Minus
chr3L 24539361 chr3L 12839511..12840092 633..52 2835 99.1 Minus
chr3L 24539361 chr3L 12836087..12836205 1478..1360 595 100 Minus
chr3L 24539361 chr3L 12840385..12840434 51..2 250 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:15:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12848369..12849096 1360..633 3640 100 Minus
3L 28110227 3L 12844258..12844926 2758..2090 3345 100 Minus
3L 28110227 3L 12845055..12845668 2093..1480 3070 100 Minus
3L 28110227 3L 12849158..12849739 633..52 2910 100 Minus
3L 28110227 3L 12845733..12845853 1480..1360 605 100 Minus
3L 28110227 3L 12850032..12850081 51..2 250 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:17:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 12841469..12842196 1360..633 3640 100 Minus
3L 28103327 3L 12837358..12838026 2758..2090 3345 100 Minus
3L 28103327 3L 12838155..12838768 2093..1480 3070 100 Minus
3L 28103327 3L 12842258..12842839 633..52 2910 100 Minus
3L 28103327 3L 12838833..12838953 1480..1360 605 100 Minus
3L 28103327 3L 12843132..12843181 51..2 250 100 Minus
Blast to na_te.dros performed 2019-03-15 11:15:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2293..2397 520..622 122 62.3 Plus

RH52604.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:16:51 Download gff for RH52604.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 12834613..12835276 2092..2755 100 <- Minus
chr3L 12835409..12836020 1480..2091 99 <- Minus
chr3L 12836086..12836205 1360..1479 99 <- Minus
chr3L 12838724..12839449 634..1359 99 <- Minus
chr3L 12839511..12840092 52..633 99 <- Minus
chr3L 12840385..12840434 1..51 98   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-11-04 08:58:43 Download gff for RH52604.complete
Subject Subject Range Query Range Percent Splice Strand
CG10948-RB 1..1314 48..1361 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:40:54 Download gff for RH52604.complete
Subject Subject Range Query Range Percent Splice Strand
CG10948-RB 1..1314 48..1361 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:27:43 Download gff for RH52604.complete
Subject Subject Range Query Range Percent Splice Strand
CG10948-RB 1..1314 48..1361 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-04 08:58:42 Download gff for RH52604.complete
Subject Subject Range Query Range Percent Splice Strand
CG10948-RB 33..2787 1..2755 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:40:54 Download gff for RH52604.complete
Subject Subject Range Query Range Percent Splice Strand
CG10948-RB 36..2790 1..2755 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:27:43 Download gff for RH52604.complete
Subject Subject Range Query Range Percent Splice Strand
CG10948-RB 36..2790 1..2755 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:16:51 Download gff for RH52604.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12844261..12844924 2092..2755 100 <- Minus
3L 12845057..12845668 1480..2091 100 <- Minus
3L 12845734..12845853 1360..1479 100 <- Minus
3L 12848370..12849095 634..1359 100 <- Minus
3L 12849158..12849739 52..633 100 <- Minus
3L 12850032..12850081 1..51 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:16:51 Download gff for RH52604.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12844261..12844924 2092..2755 100 <- Minus
3L 12845057..12845668 1480..2091 100 <- Minus
3L 12845734..12845853 1360..1479 100 <- Minus
3L 12848370..12849095 634..1359 100 <- Minus
3L 12849158..12849739 52..633 100 <- Minus
3L 12850032..12850081 1..51 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:16:51 Download gff for RH52604.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12844261..12844924 2092..2755 100 <- Minus
3L 12845057..12845668 1480..2091 100 <- Minus
3L 12845734..12845853 1360..1479 100 <- Minus
3L 12848370..12849095 634..1359 100 <- Minus
3L 12849158..12849739 52..633 100 <- Minus
3L 12850032..12850081 1..51 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:40:54 Download gff for RH52604.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12837361..12838024 2092..2755 100 <- Minus
arm_3L 12838157..12838768 1480..2091 100 <- Minus
arm_3L 12838834..12838953 1360..1479 100 <- Minus
arm_3L 12841470..12842195 634..1359 100 <- Minus
arm_3L 12842258..12842839 52..633 100 <- Minus
arm_3L 12843132..12843181 1..51 98   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:38:28 Download gff for RH52604.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12837361..12838024 2092..2755 100 <- Minus
3L 12838157..12838768 1480..2091 100 <- Minus
3L 12838834..12838953 1360..1479 100 <- Minus
3L 12841470..12842195 634..1359 100 <- Minus
3L 12842258..12842839 52..633 100 <- Minus
3L 12843132..12843181 1..51 98   Minus

RH52604.hyp Sequence

Translation from 2 to 1360

> RH52604.hyp
VFFYTYLSYNYWGVNMLPLFGTMPNGVSLPNHPNFLNQLAAAISTAASST
SVVGNPSSPPKQIQNKMAKQQQQPQGSAPMDLENENEHSADVSSSTMHKE
PKLQATSNSLTLPDSTQLYLNGLVHTPPGYLYFPATQAGGATAPGNPSSA
AGGSTPAASANSTANAQMLMDPTAMMAAAMQQMQQMHYAAAAAAGMTTET
GAGLEATLNADGVTPAGLKEVIKTKNCILFPPNPNAPPPTIRERPPGCRT
VFVGGLPENITEEVIREIFESCGEITTLRMSKKNFCHIRYRQEGAIDRAI
YLSGYRLRISALNEPPNFGRLHVDYAQARDDQYDYECRQRQHQREQRHRE
RMSMDRMRSQSPPPIPHYTDHEATTVAEHLRTNETFVKAIQTITAWLERG
DCTKRNANVFYSMIQSTHAHVRRLHADKLQLEEDLKKARDSYRNQMGTMS
TQ*

RH52604.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:38:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG10948-PC 804 CG10948-PC 1..437 16..452 2289 100 Plus
CG10948-PB 437 CG10948-PB 1..437 16..452 2289 100 Plus
CG10948-PD 797 CG10948-PD 1..430 23..452 2252 100 Plus

RH52604.pep Sequence

Translation from 2 to 1360

> RH52604.pep
VFFYTYLSYNYWGVNMLPLFGTMPNGVSLPNHPNFLNQLAAAISTAASST
SVVGNPSSPPKQIQNKMAKQQQQPQGSAPMDLENENEHSADVSSSTMHKE
PKLQATSNSLTLPDSTQLYLNGLVHTPPGYLYFPATQAGGATAPGNPSSA
AGGSTPAASANSTANAQMLMDPTAMMAAAMQQMQQMHYAAAAAAGMTTET
GAGLEATLNADGVTPAGLKEVIKTKNCILFPPNPNAPPPTIRERPPGCRT
VFVGGLPENITEEVIREIFESCGEITTLRMSKKNFCHIRYRQEGAIDRAI
YLSGYRLRISALNEPPNFGRLHVDYAQARDDQYDYECRQRQHQREQRHRE
RMSMDRMRSQSPPPIPHYTDHEATTVAEHLRTNETFVKAIQTITAWLERG
DCTKRNANVFYSMIQSTHAHVRRLHADKLQLEEDLKKARDSYRNQMGTMS
TQ*

RH52604.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 23:34:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10863-PA 795 GF10863-PA 1..432 23..452 1615 81.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 23:34:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13800-PA 791 GG13800-PA 1..430 23..452 1910 96.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 23:34:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14491-PA 803 GH14491-PA 1..433 23..452 1494 74.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:52:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG10948-PC 804 CG10948-PC 1..437 16..452 2289 100 Plus
CG10948-PB 437 CG10948-PB 1..437 16..452 2289 100 Plus
CG10948-PD 797 CG10948-PD 1..430 23..452 2252 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 23:34:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13647-PA 801 GI13647-PA 1..434 23..452 1469 69.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 23:34:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22894-PA 779 GL22894-PA 1..422 23..452 1428 75.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 23:34:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10660-PA 801 GA10660-PA 1..444 16..452 1512 77.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 23:34:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24626-PA 797 GM24626-PA 1..430 23..452 2301 97.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 23:34:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12692-PA 783 GD12692-PA 1..430 23..452 2324 98.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 23:34:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13981-PA 799 GJ13981-PA 1..433 23..452 1533 71.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 23:34:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17355-PA 868 GK17355-PA 1..481 23..452 1350 69 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 23:34:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20093-PA 796 GE20093-PA 1..430 23..452 1920 94.7 Plus