Clone RH52884 Report

Search the DGRC for RH52884

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:528
Well:84
Vector:pFlc-1
Associated Gene/TranscriptHis4:CG33909-RA
Protein status:RH52884.pep: gold
Sequenced Size:607

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3379 2003-01-01 Sim4 clustering to Release 3
His4r 2008-04-29 Release 5.5 accounting
His4r 2008-08-15 Release 5.9 accounting
His4r 2008-12-18 5.12 accounting

Clone Sequence Records

RH52884.complete Sequence

607 bp (607 high quality bases) assembled on 2002-10-28

GenBank Submission: BT001842

> RH52884.complete
GGCATTTTGCGAAAGGTATTTTGAGGTGTGCGAGATCTGGTCACGCTCAC
AAGCAATTTTCTGGAGATTTCTTGAACCAACTTTACGAAGCAACTGAGAA
ATGACTGGTCGTGGAAAGGGAGGCAAAGGATTGGGAAAGGGGGGCGCCAA
GCGTCATCGTAAGGTGCTTCGTGATAACATCCAGGGTATCACCAAGCCTG
CTATTCGCCGTTTGGCTCGTCGCGGCGGTGTTAAGCGTATCTCTGGCTTG
ATTTACGAGGAAACTCGCGGTGTGCTAAAGGTATTCCTTGAGAACGTTAT
CCGTGACGCTGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTGACCG
CCATGGACGTGGTCTATGCCCTCAAGCGCCAGGGACGCACCCTTTACGGA
TTTGGCGGTTAAGCACGCCCTCTAACCTCCACATAATAAATAACCATGGA
GTTAACTTAACTACATTCAAAATACTTGATCCAATTGAATCTTAATCAGT
AGTATTCAACGCAAACTTAACCGAACGCAAATATTTTATAATTTCACAAT
ATACGGACTAAATAAATCAAAAGATATCACATAGAGAACTCAAAAAAAAA
AAAAAAA

RH52884.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:37:17
Subject Length Description Subject Range Query Range Score Percent Strand
His4r-RA 696 His4r-RA 39..630 2..593 2960 100 Plus
His4r-RC 870 His4r-RC 324..840 77..593 2585 100 Plus
His4r-RB 780 His4r-RB 198..714 77..593 2585 100 Plus
His4r-RC 870 His4r-RC 39..113 2..76 375 100 Plus
His4r-RB 780 His4r-RB 21..95 2..76 375 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:38:41
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 10451049..10451361 279..591 1565 100 Plus
chr3R 27901430 chr3R 10450783..10450989 77..283 1035 100 Plus
chr2L 23010047 chr2L 21418077..21418394 412..95 825 84 Minus
chr2L 23010047 chr2L 21423139..21423456 412..95 825 84 Minus
chr2L 23010047 chr2L 21428201..21428518 412..95 825 84 Minus
chr2L 23010047 chr2L 21433249..21433566 412..95 825 84 Minus
chr2L 23010047 chr2L 21438135..21438452 412..95 825 84 Minus
chr2L 23010047 chr2L 21452336..21452653 412..95 825 84 Minus
chr2L 23010047 chr2L 21482631..21482948 412..95 825 84 Minus
chr2L 23010047 chr2L 21487780..21488097 412..95 825 84 Minus
chr2L 23010047 chr2L 21492825..21493142 412..95 825 84 Minus
chr2L 23010047 chr2L 21497870..21498187 412..95 825 84 Minus
chr2L 23010047 chr2L 21518057..21518374 412..95 825 84 Minus
chr2L 23010047 chr2L 21522900..21523217 412..95 825 84 Minus
chr2L 23010047 chr2L 21527743..21528060 412..95 825 84 Minus
chr2L 23010047 chr2L 21537630..21537947 412..95 825 84 Minus
chr2L 23010047 chr2L 21457399..21457716 412..95 810 83.6 Minus
chr2L 23010047 chr2L 21462459..21462776 412..95 810 83.6 Minus
chr2L 23010047 chr2L 21467502..21467819 412..95 810 83.6 Minus
chr2L 23010047 chr2L 21472545..21472862 412..95 810 83.6 Minus
chr2L 23010047 chr2L 21477588..21477905 412..95 810 83.6 Minus
chr2L 23010047 chr2L 21502923..21503240 412..95 810 83.6 Minus
chr2L 23010047 chr2L 21507968..21508285 412..95 810 83.6 Minus
chr2L 23010047 chr2L 21513012..21513329 412..95 810 83.6 Minus
chr2L 23010047 chr2L 21532586..21532903 412..95 810 83.6 Minus
chr3R 27901430 chr3R 10450498..10450572 2..76 375 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 21:33:03
Subject Length Description Subject Range Query Range Score Percent Strand
His-Psi:CR33867-RA 526 CR33867-RA 209..526 95..412 825 83.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:38:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14626292..14626606 279..593 1575 100 Plus
3R 32079331 3R 14626026..14626232 77..283 1035 100 Plus
2L 23513712 2L 21424638..21424955 412..95 825 84 Minus
2L 23513712 2L 21429700..21430017 412..95 825 84 Minus
2L 23513712 2L 21419576..21419893 412..95 825 84 Minus
2L 23513712 2L 21434748..21435065 412..95 825 84 Minus
2L 23513712 2L 21439634..21439951 412..95 825 84 Minus
2L 23513712 2L 21453835..21454152 412..95 825 84 Minus
2L 23513712 2L 21484130..21484447 412..95 825 84 Minus
2L 23513712 2L 21489279..21489596 412..95 825 84 Minus
2L 23513712 2L 21494324..21494641 412..95 825 84 Minus
2L 23513712 2L 21499369..21499686 412..95 825 84 Minus
2L 23513712 2L 21519556..21519873 412..95 825 84 Minus
2L 23513712 2L 21524399..21524716 412..95 825 84 Minus
2L 23513712 2L 21529242..21529559 412..95 825 84 Minus
2L 23513712 2L 21539129..21539446 412..95 825 84 Minus
2L 23513712 2L 21458898..21459215 412..95 810 83.6 Minus
2L 23513712 2L 21463958..21464275 412..95 810 83.6 Minus
2L 23513712 2L 21469001..21469318 412..95 810 83.6 Minus
2L 23513712 2L 21474044..21474361 412..95 810 83.6 Minus
2L 23513712 2L 21479087..21479404 412..95 810 83.6 Minus
2L 23513712 2L 21504422..21504739 412..95 810 83.6 Minus
2L 23513712 2L 21509467..21509784 412..95 810 83.6 Minus
2L 23513712 2L 21514511..21514828 412..95 810 83.6 Minus
2L 23513712 2L 21534085..21534402 412..95 810 83.6 Minus
3R 32079331 3R 14625741..14625815 2..76 375 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:11:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 14367123..14367437 279..593 1575 100 Plus
3R 31820162 3R 14366857..14367063 77..283 1035 100 Plus
2L 23513712 2L 21499369..21499686 412..95 825 83.9 Minus
2L 23513712 2L 21539129..21539446 412..95 825 83.9 Minus
2L 23513712 2L 21529242..21529559 412..95 825 83.9 Minus
2L 23513712 2L 21524399..21524716 412..95 825 83.9 Minus
2L 23513712 2L 21519556..21519873 412..95 825 83.9 Minus
2L 23513712 2L 21494324..21494641 412..95 825 83.9 Minus
2L 23513712 2L 21489279..21489596 412..95 825 83.9 Minus
2L 23513712 2L 21484130..21484447 412..95 825 83.9 Minus
2L 23513712 2L 21453835..21454152 412..95 825 83.9 Minus
2L 23513712 2L 21439634..21439951 412..95 825 83.9 Minus
2L 23513712 2L 21434748..21435065 412..95 825 83.9 Minus
2L 23513712 2L 21429700..21430017 412..95 825 83.9 Minus
2L 23513712 2L 21424638..21424955 412..95 825 83.9 Minus
2L 23513712 2L 21419576..21419893 412..95 825 83.9 Minus
2L 23513712 2L 21534085..21534402 412..95 810 83.6 Minus
2L 23513712 2L 21514511..21514828 412..95 810 83.6 Minus
2L 23513712 2L 21509467..21509784 412..95 810 83.6 Minus
2L 23513712 2L 21504422..21504739 412..95 810 83.6 Minus
2L 23513712 2L 21479087..21479404 412..95 810 83.6 Minus
2L 23513712 2L 21474044..21474361 412..95 810 83.6 Minus
2L 23513712 2L 21469001..21469318 412..95 810 83.6 Minus
2L 23513712 2L 21463958..21464275 412..95 810 83.6 Minus
2L 23513712 2L 21458898..21459215 412..95 810 83.6 Minus
Unimproved_211000022260156_90_773 683 Unimproved_211000022260156_90_773 48..179 95..226 465 90.1 Plus
3R 31820162 3R 14366572..14366646 2..76 375 100 Plus
Unimproved_211000022260156_90_773 683 Unimproved_211000022260156_90_773 192..350 254..412 330 80.5 Plus
Blast to na_te.dros performed on 2019-03-15 20:38:39 has no hits.

RH52884.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:39:39 Download gff for RH52884.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 10450496..10450572 1..76 98 -> Plus
chr3R 10450783..10450986 77..280 100 -> Plus
chr3R 10451051..10451361 281..591 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:49:27 Download gff for RH52884.complete
Subject Subject Range Query Range Percent Splice Strand
His4r-RC 1..312 101..412 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:08:58 Download gff for RH52884.complete
Subject Subject Range Query Range Percent Splice Strand
His4r-RC 1..312 101..412 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:09:32 Download gff for RH52884.complete
Subject Subject Range Query Range Percent Splice Strand
His4r-RB 1..312 101..412 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:59:54 Download gff for RH52884.complete
Subject Subject Range Query Range Percent Splice Strand
His4r-RC 1..312 101..412 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:40:14 Download gff for RH52884.complete
Subject Subject Range Query Range Percent Splice Strand
His4r-RB 1..312 101..412 100   Plus
Sim4 to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:33:03 has no hits.
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:29:38 Download gff for RH52884.complete
Subject Subject Range Query Range Percent Splice Strand
His4r-RA 1..592 1..591 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:08:57 Download gff for RH52884.complete
Subject Subject Range Query Range Percent Splice Strand
His4r-RA 1..592 1..591 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:09:32 Download gff for RH52884.complete
Subject Subject Range Query Range Percent Splice Strand
His4r-RA 1..576 16..591 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:59:54 Download gff for RH52884.complete
Subject Subject Range Query Range Percent Splice Strand
His4r-RA 1..592 1..591 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:40:14 Download gff for RH52884.complete
Subject Subject Range Query Range Percent Splice Strand
His4r-RA 1..576 16..591 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:39:39 Download gff for RH52884.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14626026..14626229 77..280 100 -> Plus
3R 14625739..14625815 1..76 98 -> Plus
3R 14626294..14626604 281..591 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:39:39 Download gff for RH52884.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14626026..14626229 77..280 100 -> Plus
3R 14625739..14625815 1..76 98 -> Plus
3R 14626294..14626604 281..591 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:39:39 Download gff for RH52884.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14626026..14626229 77..280 100 -> Plus
3R 14625739..14625815 1..76 98 -> Plus
3R 14626294..14626604 281..591 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:09:32 Download gff for RH52884.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10451461..10451537 1..76 98 -> Plus
arm_3R 10451748..10451951 77..280 100 -> Plus
arm_3R 10452016..10452326 281..591 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:31:21 Download gff for RH52884.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14367125..14367435 281..591 100   Plus
3R 14366570..14366646 1..76 98 -> Plus
3R 14366857..14367060 77..280 100 -> Plus

RH52884.hyp Sequence

Translation from 100 to 411

> RH52884.hyp
MTGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGL
IYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYG
FGG*

RH52884.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:03
Subject Length Description Subject Range Query Range Score Percent Strand
His4r-PD 103 CG3379-PD 1..103 1..103 524 100 Plus
His4r-PC 103 CG3379-PC 1..103 1..103 524 100 Plus
His4r-PB 103 CG3379-PB 1..103 1..103 524 100 Plus
His4r-PA 103 CG3379-PA 1..103 1..103 524 100 Plus
His4:CG33909-PA 103 CG33909-PA 1..103 1..103 524 100 Plus

RH52884.pep Sequence

Translation from 100 to 411

> RH52884.pep
MTGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGL
IYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYG
FGG*

RH52884.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:19:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22858-PA 103 GF22858-PA 1..103 1..103 507 100 Plus
Dana\GF18991-PA 103 GF18991-PA 1..103 1..103 507 100 Plus
Dana\GF21628-PA 103 GF21628-PA 1..103 1..103 507 100 Plus
Dana\GF19310-PA 103 GF19310-PA 1..103 1..103 507 100 Plus
Dana\GF20402-PA 103 GF20402-PA 1..103 1..103 507 100 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:19:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21495-PA 103 GG21495-PA 1..103 1..103 507 100 Plus
Dere\GG21493-PA 103 GG21493-PA 1..103 1..103 507 100 Plus
Dere\GG11015-PA 103 GG11015-PA 1..103 1..103 507 100 Plus
Dere\GG16374-PA 103 GG16374-PA 1..103 1..103 507 100 Plus
Dere\GG21501-PA 103 GG21501-PA 1..103 1..103 507 100 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:19:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH25283-PA 103 GH25283-PA 1..103 1..103 507 100 Plus
Dgri\GH25065-PA 103 GH25065-PA 1..103 1..103 507 100 Plus
Dgri\GH25042-PA 103 GH25042-PA 1..103 1..103 507 100 Plus
Dgri\GH25040-PA 103 GH25040-PA 1..103 1..103 507 100 Plus
Dgri\GH25037-PA 103 GH25037-PA 1..103 1..103 507 100 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:16:55
Subject Length Description Subject Range Query Range Score Percent Strand
His4:CG33909-PA 103 CG33909-PA 1..103 1..103 524 100 Plus
His4:CG31611-PA 103 CG31611-PA 1..103 1..103 524 100 Plus
His4:CG33907-PA 103 CG33907-PA 1..103 1..103 524 100 Plus
His4:CG33905-PA 103 CG33905-PA 1..103 1..103 524 100 Plus
His4:CG33903-PA 103 CG33903-PA 1..103 1..103 524 100 Plus
His4:CG33901-PA 103 CG33901-PA 1..103 1..103 524 100 Plus
His4:CG33899-PA 103 CG33899-PA 1..103 1..103 524 100 Plus
His4:CG33897-PA 103 CG33897-PA 1..103 1..103 524 100 Plus
His4:CG33895-PA 103 CG33895-PA 1..103 1..103 524 100 Plus
His4:CG33893-PA 103 CG33893-PA 1..103 1..103 524 100 Plus
His4:CG33891-PA 103 CG33891-PA 1..103 1..103 524 100 Plus
His4:CG33889-PA 103 CG33889-PA 1..103 1..103 524 100 Plus
His4:CG33887-PA 103 CG33887-PA 1..103 1..103 524 100 Plus
His4:CG33885-PA 103 CG33885-PA 1..103 1..103 524 100 Plus
His4:CG33883-PA 103 CG33883-PA 1..103 1..103 524 100 Plus
His4:CG33875-PA 103 CG33875-PA 1..103 1..103 524 100 Plus
His4:CG33873-PA 103 CG33873-PA 1..103 1..103 524 100 Plus
His4:CG33871-PA 103 CG33871-PA 1..103 1..103 524 100 Plus
His4r-PD 103 CG3379-PD 1..103 1..103 524 100 Plus
His4r-PC 103 CG3379-PC 1..103 1..103 524 100 Plus
His4r-PB 103 CG3379-PB 1..103 1..103 524 100 Plus
His4r-PA 103 CG3379-PA 1..103 1..103 524 100 Plus
His4:CG33881-PA 103 CG33881-PA 1..103 1..103 521 99 Plus
His4:CG33879-PA 103 CG33879-PA 1..103 1..103 521 99 Plus
His4:CG33877-PA 103 CG33877-PA 1..103 1..103 521 99 Plus
His4:CG33869-PA 103 CG33869-PA 1..103 1..103 521 99 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:19:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16889-PA 103 GI16889-PA 1..103 1..103 507 100 Plus
Dmoj\GI24152-PA 103 GI24152-PA 1..103 1..103 507 100 Plus
Dmoj\GI13912-PA 103 GI13912-PA 1..103 1..103 507 100 Plus
Dmoj\GI17679-PA 103 GI17679-PA 1..103 1..103 507 100 Plus
Dmoj\GI13890-PA 103 GI13890-PA 1..103 1..103 507 100 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:19:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24413-PA 103 GL24413-PA 1..103 1..103 507 100 Plus
Dper\GL23558-PA 103 GL23558-PA 1..103 1..103 507 100 Plus
Dper\GL23554-PA 103 GL23554-PA 1..103 1..103 507 100 Plus
Dper\GL23552-PA 103 GL23552-PA 1..103 1..103 507 100 Plus
Dper\GL16866-PA 103 GL16866-PA 1..103 1..103 507 100 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:19:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17414-PA 103 GA17414-PA 1..103 1..103 507 100 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:19:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13192-PA 103 GM13192-PA 1..103 1..103 507 100 Plus
Dsec\GM19317-PA 103 GM19317-PA 1..103 1..103 507 100 Plus
Dsec\GM13120-PA 103 GM13120-PA 1..103 1..103 507 100 Plus
Dsec\GM19705-PA 103 GM19705-PA 1..103 1..103 507 100 Plus
Dsec\GM26662-PA 103 GM26662-PA 1..103 1..103 507 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:19:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18968-PA 103 GD18968-PA 1..103 1..103 507 100 Plus
Dsim\GD12574-PA 103 GD12574-PA 1..103 1..103 507 100 Plus
Dsim\GD11690-PA 103 GD11690-PA 1..103 1..103 507 100 Plus
Dsim\GD11217-PA 103 GD11217-PA 1..103 1..103 507 100 Plus
Dsim\GD10660-PA 103 GD10660-PA 1..103 1..103 507 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:19:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23522-PA 103 GJ23522-PA 1..103 1..103 507 100 Plus
Dvir\GJ23520-PA 103 GJ23520-PA 1..103 1..103 507 100 Plus
Dvir\GJ23515-PA 103 GJ23515-PA 1..103 1..103 507 100 Plus
Dvir\GJ23525-PA 103 GJ23525-PA 1..103 1..103 507 100 Plus
Dvir\GJ23529-PA 103 GJ23529-PA 1..103 1..103 507 100 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:19:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24099-PA 103 GK24099-PA 1..103 1..103 507 100 Plus
Dwil\GK24036-PA 103 GK24036-PA 1..103 1..103 507 100 Plus
Dwil\GK19438-PA 103 GK19438-PA 1..103 1..103 507 100 Plus
Dwil\GK21030-PA 103 GK21030-PA 1..103 1..103 507 100 Plus
Dwil\GK12810-PA 103 GK12810-PA 1..103 1..103 507 100 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:19:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14476-PA 103 GE14476-PA 1..103 1..103 507 100 Plus
Dyak\GE24247-PA 103 GE24247-PA 1..103 1..103 507 100 Plus