Clone RH54244 Report

Search the DGRC for RH54244

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:542
Well:44
Vector:pFlc-1
Associated Gene/Transcriptyellow-c-RA
Protein status:RH54244.pep: gold
Preliminary Size:1508
Sequenced Size:1539

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4182 2002-01-01 Sim4 clustering to Release 2
CG4182 2002-04-26 Blastp of sequenced clone
CG4182 2003-01-01 Sim4 clustering to Release 3
yellow-c 2008-04-29 Release 5.5 accounting
yellow-c 2008-08-15 Release 5.9 accounting
yellow-c 2008-12-18 5.12 accounting

Clone Sequence Records

RH54244.complete Sequence

1539 bp (1539 high quality bases) assembled on 2002-04-26

GenBank Submission: AY113601

> RH54244.complete
GTTGCAGTTAGCGCGCTCAACTCGAACTGAACGGAGGTCCAAAAAAAAAG
AAACGAGCAATCCAAAAAAAATCGAATAATTGAAAAATCCAAAATGAACC
CACTAGGAATGTTGAGCCTGGGCTTAATGGTGTGCCTTATCGGCGCCTTC
AGCCGGATTGCATCGGCCAAGCTGGAGGAGAAGTTCTCGTGGAAGCAACT
GGCCTTCGATTGGCCCACTCCGGAGGCCGAGGCGGAGGCCAAGTCGAATG
GCCACTACATCGTGGAGAACAACCTGCCGCTGGGCGTGGAGCGTTGGCAA
AACAGAATCTTTGTCACTGTGCCAAGATGGAAGGCTGGTGTTGCTGCCAC
ACTCAACTACATCGACATTAATTCGACGGAGAAGTCGCCAAAGCTGCATC
CGTATCCCAGTTGGGAGGCCAACAAGCTGCCCATCGATGTGCAGCCACAG
GACCAAAAGACACCATCCGGTGGACGTCTGGACGCGGACAAGGCTCAAGA
TGCCGGCATCCAGCTGAAGGACAACTCCACTGTCATTTCCACCTTCCGAA
TTCAAGTCGACGTATGCGATCGCCTGTGGGTGCTCGATACTGGCTTGGCC
GACATCCTGGGCAGTCCCAAGCAGATTACGCCCAATTCAATCCTGGTTTT
CGACTTGAAAACAGATACTTTACTGCGCCGTTTCACCATTCCCGCTGATC
AGACCAAAGAGGACTCGTTCTTTGCGAATATTGTTGTGGATGCGGACCGC
TCGGAGTGCCAAGATGCCTTTGCTTACATTCCGGATTTGGGTGCCTACGG
TGTGATTGTGTACTCCCTGAGGAACGACAAATCCTACCGCGTCAAGCACA
ACTTCTTCCACTTCGATCCTCTGCATGGTGATTTCAATGTGGGCGGCGTG
AACTTCCAGTGGACGGATGGCGTTTTTGGGCTGGCCGTGGGCCCAATGAA
TCCAGATCACTCCAAGGACATTTATTTCCATGCCCTGGCCAGTACCAAGG
AGTTCAAGGTTTCGAACCGCGTGCTGCAAAACGAATCACACGTGACCGCT
GGCGATTCGTATTACGATTTTAAATACGTTGGTGACCGTGGCATGAATGG
CCAGTCCACCGCCGAGGTCTTTGACCCCGAGACCGGCGTCATCTTCTATA
CGCAGGTGAACAAAGACGCCATTGCTTGTTGGAACATCAAGCGTCCATAC
ACTCCGGACACCCAGGGGCTAATCGATTCCGATTCGCACACTCTGGTCTT
TCCAAATGACATGAAAATCGACAATGAAGGCACTATTTGGGTGCTGTCCG
ACAAGATGCCGACATATTTGTACAAGGAACTCGATCCCTCGGCCGTCAAC
TATCGTATTTTGATGGGCCAGAACCGCGATCTCATCAAGGGTACACCATG
CGAAATGTGATCACTTGGATATTTAAATCTACATGCTGAGTTTATGACGC
GGTGCATTTTTGTATTTACATTATGACATTATTGTTTGTTAGTAAGTCAG
CTTAATAAACTATTTGAAATGTGAAAAAAAAAAAAAAAA

RH54244.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:10:14
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-c-RA 1654 yellow-c-RA 89..1611 2..1524 7600 99.9 Plus
l(2)35Bg.a 2382 l(2)35Bg.a 887..1678 1524..733 3945 99.8 Minus
l(2)35Bg-RA 2508 l(2)35Bg-RA 977..1768 1524..733 3945 99.8 Minus
l(2)35Bg.a 2382 l(2)35Bg.a 1736..2145 734..325 2050 100 Minus
l(2)35Bg-RA 2508 l(2)35Bg-RA 1826..2235 734..325 2050 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:51:43
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 15035843..15036633 733..1523 3940 99.9 Plus
chr2L 23010047 chr2L 15035376..15035785 325..734 2050 100 Plus
chr2L 23010047 chr2L 15034264..15034588 2..326 1625 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:33:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:51:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15037051..15037842 733..1524 3945 99.9 Plus
2L 23513712 2L 15036584..15036993 325..734 2050 100 Plus
2L 23513712 2L 15035472..15035796 2..326 1625 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:40:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15037051..15037842 733..1524 3945 99.8 Plus
2L 23513712 2L 15036584..15036993 325..734 2050 100 Plus
2L 23513712 2L 15035472..15035796 2..326 1625 100 Plus
Blast to na_te.dros performed on 2019-03-16 20:51:41 has no hits.

RH54244.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:52:46 Download gff for RH54244.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 15034263..15034588 1..326 99 -> Plus
chr2L 15035378..15035783 327..732 100 -> Plus
chr2L 15035843..15036633 733..1523 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:49:39 Download gff for RH54244.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-c-RA 1..1317 94..1410 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:54:36 Download gff for RH54244.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-c-RA 1..1317 94..1410 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:41:20 Download gff for RH54244.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-c-RA 1..1317 94..1410 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:47:02 Download gff for RH54244.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-c-RA 1..1317 94..1410 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:57:07 Download gff for RH54244.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-c-RA 1..1317 94..1410 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:33:24 Download gff for RH54244.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-c-RA 2..1523 2..1523 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:54:36 Download gff for RH54244.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-c-RA 2..1523 2..1523 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:41:20 Download gff for RH54244.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-c-RA 1..1522 2..1523 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:47:02 Download gff for RH54244.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-c-RA 2..1523 2..1523 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:07 Download gff for RH54244.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-c-RA 1..1522 2..1523 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:52:46 Download gff for RH54244.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15035471..15035796 1..326 99 -> Plus
2L 15036586..15036991 327..732 100 -> Plus
2L 15037051..15037841 733..1523 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:52:46 Download gff for RH54244.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15035471..15035796 1..326 99 -> Plus
2L 15036586..15036991 327..732 100 -> Plus
2L 15037051..15037841 733..1523 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:52:46 Download gff for RH54244.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15035471..15035796 1..326 99 -> Plus
2L 15036586..15036991 327..732 100 -> Plus
2L 15037051..15037841 733..1523 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:41:20 Download gff for RH54244.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15035471..15035796 1..326 99 -> Plus
arm_2L 15036586..15036991 327..732 100 -> Plus
arm_2L 15037051..15037841 733..1523 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:19:41 Download gff for RH54244.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15035471..15035796 1..326 99 -> Plus
2L 15036586..15036991 327..732 100 -> Plus
2L 15037051..15037841 733..1523 99   Plus

RH54244.pep Sequence

Translation from 93 to 1409

> RH54244.pep
MNPLGMLSLGLMVCLIGAFSRIASAKLEEKFSWKQLAFDWPTPEAEAEAK
SNGHYIVENNLPLGVERWQNRIFVTVPRWKAGVAATLNYIDINSTEKSPK
LHPYPSWEANKLPIDVQPQDQKTPSGGRLDADKAQDAGIQLKDNSTVIST
FRIQVDVCDRLWVLDTGLADILGSPKQITPNSILVFDLKTDTLLRRFTIP
ADQTKEDSFFANIVVDADRSECQDAFAYIPDLGAYGVIVYSLRNDKSYRV
KHNFFHFDPLHGDFNVGGVNFQWTDGVFGLAVGPMNPDHSKDIYFHALAS
TKEFKVSNRVLQNESHVTAGDSYYDFKYVGDRGMNGQSTAEVFDPETGVI
FYTQVNKDAIACWNIKRPYTPDTQGLIDSDSHTLVFPNDMKIDNEGTIWV
LSDKMPTYLYKELDPSAVNYRILMGQNRDLIKGTPCEM*

RH54244.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:40:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14904-PA 438 GF14904-PA 1..438 1..438 2238 93.6 Plus
Dana\y-PA 546 GF21448-PA 23..409 23..438 836 40.6 Plus
Dana\GF18090-PA 452 GF18090-PA 1..452 6..437 827 36.7 Plus
Dana\GF15359-PA 453 GF15359-PA 22..404 27..438 807 38.1 Plus
Dana\GF19909-PA 404 GF19909-PA 9..403 26..436 431 27.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:40:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25141-PA 434 GG25141-PA 1..434 1..438 2274 96.3 Plus
Dere\y-PA 541 GG12780-PA 8..407 11..438 843 40 Plus
Dere\GG17085-PA 452 GG17085-PA 92..452 51..437 832 40.4 Plus
Dere\GG22769-PA 453 GG22769-PA 13..404 18..438 831 38.3 Plus
Dere\GG17086-PA 432 GG17086-PA 1..432 6..437 822 38.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:40:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10914-PA 435 GH10914-PA 22..435 25..438 1896 80.4 Plus
Dgri\GH11563-PA 464 GH11563-PA 17..403 22..437 847 38.2 Plus
Dgri\GH24338-PA 546 GH24338-PA 8..405 12..438 837 39.5 Plus
Dgri\GH19199-PA 446 GH19199-PA 89..446 55..437 802 38.9 Plus
Dgri\GH23996-PA 455 GH23996-PA 34..432 15..436 766 38.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:10:14
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-c-PB 438 CG4182-PB 1..438 1..438 2339 100 Plus
yellow-c-PA 438 CG4182-PA 1..438 1..438 2339 100 Plus
yellow-b-PB 453 CG17914-PB 1..404 6..438 840 37.6 Plus
yellow-b-PA 453 CG17914-PA 1..404 6..438 840 37.6 Plus
y-PA 541 CG3757-PA 21..407 23..438 830 40.3 Plus
yellow-f2-PA 452 CG8063-PA 93..452 52..437 812 39.2 Plus
yellow-f-PB 418 CG18550-PB 1..418 6..437 802 38.3 Plus
yellow-f-PC 413 CG18550-PC 1..413 6..437 794 38.2 Plus
yellow-f-PA 429 CG18550-PA 1..429 6..437 792 37.6 Plus
yellow-h-PA 463 CG1629-PA 49..440 23..436 743 37.4 Plus
yellow-e2-PB 435 CG17044-PB 45..434 31..436 420 26.9 Plus
yellow-d-PA 432 CG9889-PA 34..416 27..433 389 27.4 Plus
yellow-d2-PA 412 CG9891-PA 17..411 23..436 377 26.8 Plus
yellow-e-PA 530 CG9792-PA 18..386 20..423 368 27.3 Plus
yellow-e3-PA 409 CG17045-PA 38..397 49..436 313 27.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:40:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13248-PA 432 GI13248-PA 1..432 6..438 1962 80.4 Plus
Dmoj\GI17054-PA 454 GI17054-PA 4..402 5..437 873 38.6 Plus
Dmoj\GI21724-PA 543 GI21724-PA 29..412 26..438 824 40.4 Plus
Dmoj\GI24232-PA 417 GI24232-PA 60..417 55..437 820 39.6 Plus
Dmoj\GI11002-PA 470 GI11002-PA 62..446 33..436 784 39.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:40:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26025-PA 438 GL26025-PA 1..438 1..438 2215 93.2 Plus
Dper\GL18784-PA 454 GL18784-PA 1..403 6..437 871 38.9 Plus
Dper\GL20376-PA 482 GL20376-PA 30..416 23..438 850 41.1 Plus
Dper\GL23151-PA 436 GL23151-PA 76..436 51..437 818 39.1 Plus
Dper\GL18156-PA 466 GL18156-PA 48..443 20..436 790 39.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:40:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18010-PA 438 GA18010-PA 1..438 1..438 2215 93.2 Plus
Dpse\GA14722-PA 454 GA14722-PA 1..403 6..437 873 39.2 Plus
Dpse\y-PA 560 GA17665-PA 12..416 4..438 849 40.4 Plus
Dpse\GA27163-PA 460 GA27163-PA 100..460 51..437 827 39.3 Plus
Dpse\GA27858-PA 427 GA27858-PA 9..404 20..436 783 39.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:40:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15882-PA 438 GM15882-PA 1..438 1..438 2334 98.9 Plus
Dsec\GM17203-PA 453 GM17203-PA 13..404 18..438 838 38.3 Plus
Dsec\GM25968-PA 452 GM25968-PA 93..452 52..437 833 39.9 Plus
Dsec\GM25969-PA 434 GM25969-PA 1..434 6..437 810 38.1 Plus
Dsec\y-PA 426 GM19059-PA 8..328 11..359 638 39.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:40:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23989-PA 438 GD23989-PA 1..438 1..438 2338 99.1 Plus
Dsim\GD24079-PA 453 GD24079-PA 13..404 18..438 838 38.3 Plus
Dsim\GD20528-PA 452 GD20528-PA 93..452 52..437 831 39.7 Plus
Dsim\GD20529-PA 429 GD20529-PA 1..429 6..437 799 38.3 Plus
Dsim\y-PA 406 GD24705-PA 8..328 11..359 639 39.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:40:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11869-PA 435 GJ11869-PA 21..434 24..437 1937 82.4 Plus
Dvir\GJ17304-PA 466 GJ17304-PA 8..405 6..437 871 38.1 Plus
Dvir\y-PA 541 GJ15591-PA 23..409 23..438 840 41.3 Plus
Dvir\GJ10805-PA 452 GJ10805-PA 95..452 55..437 801 38.6 Plus
Dvir\GJ14923-PA 455 GJ14923-PA 48..432 33..436 792 40.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:40:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18310-PA 436 GK18310-PA 4..436 4..438 2101 88.3 Plus
Dwil\GK18231-PA 415 GK18231-PA 1..400 6..433 841 38.5 Plus
Dwil\GK25268-PA 545 GK25268-PA 25..411 23..438 834 40.3 Plus
Dwil\GK13672-PA 468 GK13672-PA 61..430 33..423 802 40.5 Plus
Dwil\GK12212-PA 404 GK12212-PA 3..404 29..437 739 35.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:40:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20803-PA 438 GE20803-PA 1..438 1..438 2293 96.8 Plus
Dyak\GE12764-PA 453 GE12764-PA 13..404 18..438 847 38.8 Plus
Dyak\y-PA 541 GE16608-PA 8..407 11..438 845 40.5 Plus
Dyak\GE24475-PA 434 GE24475-PA 1..434 6..437 812 37.7 Plus
Dyak\GE24474-PA 452 GE24474-PA 93..452 52..437 808 38.9 Plus

RH54244.hyp Sequence

Translation from 93 to 1409

> RH54244.hyp
MNPLGMLSLGLMVCLIGAFSRIASAKLEEKFSWKQLAFDWPTPEAEAEAK
SNGHYIVENNLPLGVERWQNRIFVTVPRWKAGVAATLNYIDINSTEKSPK
LHPYPSWEANKLPIDVQPQDQKTPSGGRLDADKAQDAGIQLKDNSTVIST
FRIQVDVCDRLWVLDTGLADILGSPKQITPNSILVFDLKTDTLLRRFTIP
ADQTKEDSFFANIVVDADRSECQDAFAYIPDLGAYGVIVYSLRNDKSYRV
KHNFFHFDPLHGDFNVGGVNFQWTDGVFGLAVGPMNPDHSKDIYFHALAS
TKEFKVSNRVLQNESHVTAGDSYYDFKYVGDRGMNGQSTAEVFDPETGVI
FYTQVNKDAIACWNIKRPYTPDTQGLIDSDSHTLVFPNDMKIDNEGTIWV
LSDKMPTYLYKELDPSAVNYRILMGQNRDLIKGTPCEM*

RH54244.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:14:18
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-c-PB 438 CG4182-PB 1..438 1..438 2339 100 Plus
yellow-c-PA 438 CG4182-PA 1..438 1..438 2339 100 Plus
yellow-b-PB 453 CG17914-PB 1..404 6..438 840 37.6 Plus
yellow-b-PA 453 CG17914-PA 1..404 6..438 840 37.6 Plus
y-PA 541 CG3757-PA 21..407 23..438 830 40.3 Plus