BDGP Sequence Production Resources |
Search the DGRC for RH54244
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 542 |
Well: | 44 |
Vector: | pFlc-1 |
Associated Gene/Transcript | yellow-c-RA |
Protein status: | RH54244.pep: gold |
Preliminary Size: | 1508 |
Sequenced Size: | 1539 |
Gene | Date | Evidence |
---|---|---|
CG4182 | 2002-01-01 | Sim4 clustering to Release 2 |
CG4182 | 2002-04-26 | Blastp of sequenced clone |
CG4182 | 2003-01-01 | Sim4 clustering to Release 3 |
yellow-c | 2008-04-29 | Release 5.5 accounting |
yellow-c | 2008-08-15 | Release 5.9 accounting |
yellow-c | 2008-12-18 | 5.12 accounting |
1539 bp (1539 high quality bases) assembled on 2002-04-26
GenBank Submission: AY113601
> RH54244.complete GTTGCAGTTAGCGCGCTCAACTCGAACTGAACGGAGGTCCAAAAAAAAAG AAACGAGCAATCCAAAAAAAATCGAATAATTGAAAAATCCAAAATGAACC CACTAGGAATGTTGAGCCTGGGCTTAATGGTGTGCCTTATCGGCGCCTTC AGCCGGATTGCATCGGCCAAGCTGGAGGAGAAGTTCTCGTGGAAGCAACT GGCCTTCGATTGGCCCACTCCGGAGGCCGAGGCGGAGGCCAAGTCGAATG GCCACTACATCGTGGAGAACAACCTGCCGCTGGGCGTGGAGCGTTGGCAA AACAGAATCTTTGTCACTGTGCCAAGATGGAAGGCTGGTGTTGCTGCCAC ACTCAACTACATCGACATTAATTCGACGGAGAAGTCGCCAAAGCTGCATC CGTATCCCAGTTGGGAGGCCAACAAGCTGCCCATCGATGTGCAGCCACAG GACCAAAAGACACCATCCGGTGGACGTCTGGACGCGGACAAGGCTCAAGA TGCCGGCATCCAGCTGAAGGACAACTCCACTGTCATTTCCACCTTCCGAA TTCAAGTCGACGTATGCGATCGCCTGTGGGTGCTCGATACTGGCTTGGCC GACATCCTGGGCAGTCCCAAGCAGATTACGCCCAATTCAATCCTGGTTTT CGACTTGAAAACAGATACTTTACTGCGCCGTTTCACCATTCCCGCTGATC AGACCAAAGAGGACTCGTTCTTTGCGAATATTGTTGTGGATGCGGACCGC TCGGAGTGCCAAGATGCCTTTGCTTACATTCCGGATTTGGGTGCCTACGG TGTGATTGTGTACTCCCTGAGGAACGACAAATCCTACCGCGTCAAGCACA ACTTCTTCCACTTCGATCCTCTGCATGGTGATTTCAATGTGGGCGGCGTG AACTTCCAGTGGACGGATGGCGTTTTTGGGCTGGCCGTGGGCCCAATGAA TCCAGATCACTCCAAGGACATTTATTTCCATGCCCTGGCCAGTACCAAGG AGTTCAAGGTTTCGAACCGCGTGCTGCAAAACGAATCACACGTGACCGCT GGCGATTCGTATTACGATTTTAAATACGTTGGTGACCGTGGCATGAATGG CCAGTCCACCGCCGAGGTCTTTGACCCCGAGACCGGCGTCATCTTCTATA CGCAGGTGAACAAAGACGCCATTGCTTGTTGGAACATCAAGCGTCCATAC ACTCCGGACACCCAGGGGCTAATCGATTCCGATTCGCACACTCTGGTCTT TCCAAATGACATGAAAATCGACAATGAAGGCACTATTTGGGTGCTGTCCG ACAAGATGCCGACATATTTGTACAAGGAACTCGATCCCTCGGCCGTCAAC TATCGTATTTTGATGGGCCAGAACCGCGATCTCATCAAGGGTACACCATG CGAAATGTGATCACTTGGATATTTAAATCTACATGCTGAGTTTATGACGC GGTGCATTTTTGTATTTACATTATGACATTATTGTTTGTTAGTAAGTCAG CTTAATAAACTATTTGAAATGTGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
yellow-c-RA | 1654 | yellow-c-RA | 89..1611 | 2..1524 | 7600 | 99.9 | Plus |
l(2)35Bg.a | 2382 | l(2)35Bg.a | 887..1678 | 1524..733 | 3945 | 99.8 | Minus |
l(2)35Bg-RA | 2508 | l(2)35Bg-RA | 977..1768 | 1524..733 | 3945 | 99.8 | Minus |
l(2)35Bg.a | 2382 | l(2)35Bg.a | 1736..2145 | 734..325 | 2050 | 100 | Minus |
l(2)35Bg-RA | 2508 | l(2)35Bg-RA | 1826..2235 | 734..325 | 2050 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 15035843..15036633 | 733..1523 | 3940 | 99.9 | Plus |
chr2L | 23010047 | chr2L | 15035376..15035785 | 325..734 | 2050 | 100 | Plus |
chr2L | 23010047 | chr2L | 15034264..15034588 | 2..326 | 1625 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 15037051..15037842 | 733..1524 | 3945 | 99.9 | Plus |
2L | 23513712 | 2L | 15036584..15036993 | 325..734 | 2050 | 100 | Plus |
2L | 23513712 | 2L | 15035472..15035796 | 2..326 | 1625 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 15037051..15037842 | 733..1524 | 3945 | 99.8 | Plus |
2L | 23513712 | 2L | 15036584..15036993 | 325..734 | 2050 | 100 | Plus |
2L | 23513712 | 2L | 15035472..15035796 | 2..326 | 1625 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 15034263..15034588 | 1..326 | 99 | -> | Plus |
chr2L | 15035378..15035783 | 327..732 | 100 | -> | Plus |
chr2L | 15035843..15036633 | 733..1523 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
yellow-c-RA | 1..1317 | 94..1410 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
yellow-c-RA | 1..1317 | 94..1410 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
yellow-c-RA | 1..1317 | 94..1410 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
yellow-c-RA | 1..1317 | 94..1410 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
yellow-c-RA | 1..1317 | 94..1410 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
yellow-c-RA | 2..1523 | 2..1523 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
yellow-c-RA | 2..1523 | 2..1523 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
yellow-c-RA | 1..1522 | 2..1523 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
yellow-c-RA | 2..1523 | 2..1523 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
yellow-c-RA | 1..1522 | 2..1523 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 15035471..15035796 | 1..326 | 99 | -> | Plus |
2L | 15036586..15036991 | 327..732 | 100 | -> | Plus |
2L | 15037051..15037841 | 733..1523 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 15035471..15035796 | 1..326 | 99 | -> | Plus |
2L | 15036586..15036991 | 327..732 | 100 | -> | Plus |
2L | 15037051..15037841 | 733..1523 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 15035471..15035796 | 1..326 | 99 | -> | Plus |
2L | 15036586..15036991 | 327..732 | 100 | -> | Plus |
2L | 15037051..15037841 | 733..1523 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 15035471..15035796 | 1..326 | 99 | -> | Plus |
arm_2L | 15036586..15036991 | 327..732 | 100 | -> | Plus |
arm_2L | 15037051..15037841 | 733..1523 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 15035471..15035796 | 1..326 | 99 | -> | Plus |
2L | 15036586..15036991 | 327..732 | 100 | -> | Plus |
2L | 15037051..15037841 | 733..1523 | 99 | Plus |
Translation from 93 to 1409
> RH54244.pep MNPLGMLSLGLMVCLIGAFSRIASAKLEEKFSWKQLAFDWPTPEAEAEAK SNGHYIVENNLPLGVERWQNRIFVTVPRWKAGVAATLNYIDINSTEKSPK LHPYPSWEANKLPIDVQPQDQKTPSGGRLDADKAQDAGIQLKDNSTVIST FRIQVDVCDRLWVLDTGLADILGSPKQITPNSILVFDLKTDTLLRRFTIP ADQTKEDSFFANIVVDADRSECQDAFAYIPDLGAYGVIVYSLRNDKSYRV KHNFFHFDPLHGDFNVGGVNFQWTDGVFGLAVGPMNPDHSKDIYFHALAS TKEFKVSNRVLQNESHVTAGDSYYDFKYVGDRGMNGQSTAEVFDPETGVI FYTQVNKDAIACWNIKRPYTPDTQGLIDSDSHTLVFPNDMKIDNEGTIWV LSDKMPTYLYKELDPSAVNYRILMGQNRDLIKGTPCEM*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14904-PA | 438 | GF14904-PA | 1..438 | 1..438 | 2238 | 93.6 | Plus |
Dana\y-PA | 546 | GF21448-PA | 23..409 | 23..438 | 836 | 40.6 | Plus |
Dana\GF18090-PA | 452 | GF18090-PA | 1..452 | 6..437 | 827 | 36.7 | Plus |
Dana\GF15359-PA | 453 | GF15359-PA | 22..404 | 27..438 | 807 | 38.1 | Plus |
Dana\GF19909-PA | 404 | GF19909-PA | 9..403 | 26..436 | 431 | 27.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG25141-PA | 434 | GG25141-PA | 1..434 | 1..438 | 2274 | 96.3 | Plus |
Dere\y-PA | 541 | GG12780-PA | 8..407 | 11..438 | 843 | 40 | Plus |
Dere\GG17085-PA | 452 | GG17085-PA | 92..452 | 51..437 | 832 | 40.4 | Plus |
Dere\GG22769-PA | 453 | GG22769-PA | 13..404 | 18..438 | 831 | 38.3 | Plus |
Dere\GG17086-PA | 432 | GG17086-PA | 1..432 | 6..437 | 822 | 38.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10914-PA | 435 | GH10914-PA | 22..435 | 25..438 | 1896 | 80.4 | Plus |
Dgri\GH11563-PA | 464 | GH11563-PA | 17..403 | 22..437 | 847 | 38.2 | Plus |
Dgri\GH24338-PA | 546 | GH24338-PA | 8..405 | 12..438 | 837 | 39.5 | Plus |
Dgri\GH19199-PA | 446 | GH19199-PA | 89..446 | 55..437 | 802 | 38.9 | Plus |
Dgri\GH23996-PA | 455 | GH23996-PA | 34..432 | 15..436 | 766 | 38.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
yellow-c-PB | 438 | CG4182-PB | 1..438 | 1..438 | 2339 | 100 | Plus |
yellow-c-PA | 438 | CG4182-PA | 1..438 | 1..438 | 2339 | 100 | Plus |
yellow-b-PB | 453 | CG17914-PB | 1..404 | 6..438 | 840 | 37.6 | Plus |
yellow-b-PA | 453 | CG17914-PA | 1..404 | 6..438 | 840 | 37.6 | Plus |
y-PA | 541 | CG3757-PA | 21..407 | 23..438 | 830 | 40.3 | Plus |
yellow-f2-PA | 452 | CG8063-PA | 93..452 | 52..437 | 812 | 39.2 | Plus |
yellow-f-PB | 418 | CG18550-PB | 1..418 | 6..437 | 802 | 38.3 | Plus |
yellow-f-PC | 413 | CG18550-PC | 1..413 | 6..437 | 794 | 38.2 | Plus |
yellow-f-PA | 429 | CG18550-PA | 1..429 | 6..437 | 792 | 37.6 | Plus |
yellow-h-PA | 463 | CG1629-PA | 49..440 | 23..436 | 743 | 37.4 | Plus |
yellow-e2-PB | 435 | CG17044-PB | 45..434 | 31..436 | 420 | 26.9 | Plus |
yellow-d-PA | 432 | CG9889-PA | 34..416 | 27..433 | 389 | 27.4 | Plus |
yellow-d2-PA | 412 | CG9891-PA | 17..411 | 23..436 | 377 | 26.8 | Plus |
yellow-e-PA | 530 | CG9792-PA | 18..386 | 20..423 | 368 | 27.3 | Plus |
yellow-e3-PA | 409 | CG17045-PA | 38..397 | 49..436 | 313 | 27.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13248-PA | 432 | GI13248-PA | 1..432 | 6..438 | 1962 | 80.4 | Plus |
Dmoj\GI17054-PA | 454 | GI17054-PA | 4..402 | 5..437 | 873 | 38.6 | Plus |
Dmoj\GI21724-PA | 543 | GI21724-PA | 29..412 | 26..438 | 824 | 40.4 | Plus |
Dmoj\GI24232-PA | 417 | GI24232-PA | 60..417 | 55..437 | 820 | 39.6 | Plus |
Dmoj\GI11002-PA | 470 | GI11002-PA | 62..446 | 33..436 | 784 | 39.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL26025-PA | 438 | GL26025-PA | 1..438 | 1..438 | 2215 | 93.2 | Plus |
Dper\GL18784-PA | 454 | GL18784-PA | 1..403 | 6..437 | 871 | 38.9 | Plus |
Dper\GL20376-PA | 482 | GL20376-PA | 30..416 | 23..438 | 850 | 41.1 | Plus |
Dper\GL23151-PA | 436 | GL23151-PA | 76..436 | 51..437 | 818 | 39.1 | Plus |
Dper\GL18156-PA | 466 | GL18156-PA | 48..443 | 20..436 | 790 | 39.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18010-PA | 438 | GA18010-PA | 1..438 | 1..438 | 2215 | 93.2 | Plus |
Dpse\GA14722-PA | 454 | GA14722-PA | 1..403 | 6..437 | 873 | 39.2 | Plus |
Dpse\y-PA | 560 | GA17665-PA | 12..416 | 4..438 | 849 | 40.4 | Plus |
Dpse\GA27163-PA | 460 | GA27163-PA | 100..460 | 51..437 | 827 | 39.3 | Plus |
Dpse\GA27858-PA | 427 | GA27858-PA | 9..404 | 20..436 | 783 | 39.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15882-PA | 438 | GM15882-PA | 1..438 | 1..438 | 2334 | 98.9 | Plus |
Dsec\GM17203-PA | 453 | GM17203-PA | 13..404 | 18..438 | 838 | 38.3 | Plus |
Dsec\GM25968-PA | 452 | GM25968-PA | 93..452 | 52..437 | 833 | 39.9 | Plus |
Dsec\GM25969-PA | 434 | GM25969-PA | 1..434 | 6..437 | 810 | 38.1 | Plus |
Dsec\y-PA | 426 | GM19059-PA | 8..328 | 11..359 | 638 | 39.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23989-PA | 438 | GD23989-PA | 1..438 | 1..438 | 2338 | 99.1 | Plus |
Dsim\GD24079-PA | 453 | GD24079-PA | 13..404 | 18..438 | 838 | 38.3 | Plus |
Dsim\GD20528-PA | 452 | GD20528-PA | 93..452 | 52..437 | 831 | 39.7 | Plus |
Dsim\GD20529-PA | 429 | GD20529-PA | 1..429 | 6..437 | 799 | 38.3 | Plus |
Dsim\y-PA | 406 | GD24705-PA | 8..328 | 11..359 | 639 | 39.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11869-PA | 435 | GJ11869-PA | 21..434 | 24..437 | 1937 | 82.4 | Plus |
Dvir\GJ17304-PA | 466 | GJ17304-PA | 8..405 | 6..437 | 871 | 38.1 | Plus |
Dvir\y-PA | 541 | GJ15591-PA | 23..409 | 23..438 | 840 | 41.3 | Plus |
Dvir\GJ10805-PA | 452 | GJ10805-PA | 95..452 | 55..437 | 801 | 38.6 | Plus |
Dvir\GJ14923-PA | 455 | GJ14923-PA | 48..432 | 33..436 | 792 | 40.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK18310-PA | 436 | GK18310-PA | 4..436 | 4..438 | 2101 | 88.3 | Plus |
Dwil\GK18231-PA | 415 | GK18231-PA | 1..400 | 6..433 | 841 | 38.5 | Plus |
Dwil\GK25268-PA | 545 | GK25268-PA | 25..411 | 23..438 | 834 | 40.3 | Plus |
Dwil\GK13672-PA | 468 | GK13672-PA | 61..430 | 33..423 | 802 | 40.5 | Plus |
Dwil\GK12212-PA | 404 | GK12212-PA | 3..404 | 29..437 | 739 | 35.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE20803-PA | 438 | GE20803-PA | 1..438 | 1..438 | 2293 | 96.8 | Plus |
Dyak\GE12764-PA | 453 | GE12764-PA | 13..404 | 18..438 | 847 | 38.8 | Plus |
Dyak\y-PA | 541 | GE16608-PA | 8..407 | 11..438 | 845 | 40.5 | Plus |
Dyak\GE24475-PA | 434 | GE24475-PA | 1..434 | 6..437 | 812 | 37.7 | Plus |
Dyak\GE24474-PA | 452 | GE24474-PA | 93..452 | 52..437 | 808 | 38.9 | Plus |
Translation from 93 to 1409
> RH54244.hyp MNPLGMLSLGLMVCLIGAFSRIASAKLEEKFSWKQLAFDWPTPEAEAEAK SNGHYIVENNLPLGVERWQNRIFVTVPRWKAGVAATLNYIDINSTEKSPK LHPYPSWEANKLPIDVQPQDQKTPSGGRLDADKAQDAGIQLKDNSTVIST FRIQVDVCDRLWVLDTGLADILGSPKQITPNSILVFDLKTDTLLRRFTIP ADQTKEDSFFANIVVDADRSECQDAFAYIPDLGAYGVIVYSLRNDKSYRV KHNFFHFDPLHGDFNVGGVNFQWTDGVFGLAVGPMNPDHSKDIYFHALAS TKEFKVSNRVLQNESHVTAGDSYYDFKYVGDRGMNGQSTAEVFDPETGVI FYTQVNKDAIACWNIKRPYTPDTQGLIDSDSHTLVFPNDMKIDNEGTIWV LSDKMPTYLYKELDPSAVNYRILMGQNRDLIKGTPCEM*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
yellow-c-PB | 438 | CG4182-PB | 1..438 | 1..438 | 2339 | 100 | Plus |
yellow-c-PA | 438 | CG4182-PA | 1..438 | 1..438 | 2339 | 100 | Plus |
yellow-b-PB | 453 | CG17914-PB | 1..404 | 6..438 | 840 | 37.6 | Plus |
yellow-b-PA | 453 | CG17914-PA | 1..404 | 6..438 | 840 | 37.6 | Plus |
y-PA | 541 | CG3757-PA | 21..407 | 23..438 | 830 | 40.3 | Plus |